|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00018673 ID=TCONS_00018673|Name=TCONS_00018673|organism=Clytia hemisphaerica|type=transcript|length=2736bpRun BLAST on NCBI protein sequence of TCONS_00018673-protein >TCONS_00018673-protein ID=TCONS_00018673-protein|Name=TCONS_00018673-protein|organism=Clytia hemisphaerica|type=polypeptide|length=344bp MQKLIKDLGMNKPGGFSTENVMKVLLLGLEHPHNDVRDAALSCIVDVYKIRun BLAST on NCBI transcript from alignment at sc0000304:137031..158053- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00018673 ID=TCONS_00018673|Name=TCONS_00018673|organism=Clytia hemisphaerica|type=transcript|length=21023bp|location=Sequence derived from alignment at sc0000304:137031..158053- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000304:137031..158053- >TCONS_00018673 ID=TCONS_00018673|Name=TCONS_00018673|organism=Clytia hemisphaerica|type=CDS|length=11385bp|location=Sequence derived from alignment at sc0000304:137031..158053- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00018673 vs. Swiss-Prot (Human)
Match: CE104 (Centrosomal protein of 104 kDa OS=Homo sapiens GN=CEP104 PE=1 SV=1) HSP 1 Score: 181.03 bits (458), Expect = 1.064e-46 Identity = 121/323 (37.46%), Postives = 183/323 (56.66%), Query Frame = 2
Query: 167 LLKSQIELMQKLIKDLGMNKPGGFSTENVMKVLLLGLEHPHNDVRDAALSCIVDVYKIVKEPLKSFFPPDDANTRKNPLYTKLFDSLDRADGXXXXXXXXXXXXXXXXXXXXXXXXXVKALQAQLQEMRSLAKAQVQENENEANPSTREEXXXXXXXXXXXXXXXDLDKNAKKKSLVASRISIRPISQRHKEEVLEEDMCIFCGERNEKFSNDGVLDIHYWKSCPLLQRCAGCSQVVEICSLSDHLLNECDVQQNYTQCNKCGLAILKTQAQQHKKSPTCKVPSNSSKLT--CPLCFIHVQDTEEHWKTHLV--EKCKVNLQR 1123
L SQ+ L+ +L+KDLG GF+ +NVMK + LEH +VR+ A+ I+D+Y+ + + + PPDD+NTR+N LY +F+ + DG+ T++E +A K E+AEK K EE+KALQ QL ++ + +A+VQE E++A ++ K+ A + I +E +++CIFCGER+E F+ +G LD+HYWK C +L RC C QVVEI SL++HLL ECD + + +C +C A+ K + +H K C P+ KL CPLC + EE WK HL+ C +NL++
Sbjct: 583 LAMSQMGLLARLLKDLGTGS-SGFTIDNVMKFSVSALEHRVYEVRETAVRIILDMYRQHQASILEYLPPDDSNTRRNILYKTIFEGFAKIDGRATDAEMRARRKAATEEAEKQKKEEIKALQGQLAALKEI-QAEVQEKESDAVKPKNQDIQGG-------------------KAAPAEALGI-------PDEHYLDNLCIFCGERSESFTEEG-LDLHYWKHCLMLTRCDHCKQVVEISSLTEHLLTECDKKDGFGKCYRCSEAVFKEELPRHIKHKDCN-PAKPEKLANRCPLCHENFSPGEEAWKAHLMGPAGCTMNLRK 875 The following BLAST results are available for this feature:
BLAST of TCONS_00018673 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2026, MARIMBA.