TCONS_00018262-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00018262-protein
Unique NameTCONS_00018262-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length576

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00018262-protein ID=TCONS_00018262-protein|Name=TCONS_00018262-protein|organism=Clytia hemisphaerica|type=polypeptide|length=576bp
MDMNEMESESESVLSMENDENIALNEEADNEDEEEVIENENEENEDNNIE
NVIEYGIENVIELDDFDDGDEEDGDDGDVVGVADVLAFLQQYIAGDEDEG
GSSEESDSDDMEYHSANSDSDHEDEREENEEGEQSQNSETTFDTNLPTSH
SYLGDDLEILHGRTIHVEGDLVSLPLYNISGIVLIPGQILPLNISHPTAV
AMMKRVVSADKTFGFLIDKPGSTTTRGDHSNNREFASVGVTCEVLSMKEE
ERYGLTRLLLKAEGRQRFKLITIQSQLDGVMLGKIRILPDAYISPQPRAS
LVYAQHYPQCNAIRGQLVANQFHLNEEKLSSNQNRYLVGFNLKHAQLLCT
SLTSIQGWTYKLYNPYFLMDCLLHEIRSWNQNLDFDNIPQNPIEFSFWIT
KNLPLTNEMKVELLEIDSAPLRLRKQIHFMNKFGSGLACERCKSLITDKD
ELFSLSKRGPMGAFVNPGGVIHETLTFYKANHLRLQGRATTEYSWFPGYA
WTIAICKTCHRHMGWKFTATKKELKPKKFWGLVRAALKPIFKESRDKEEA
DERPARRTFSSEGLGDNRNIQYESSI
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_010262XLOC_010262Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00018262TCONS_00018262Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003111Lon_substr-bd
IPR004910Yippee/Mis18/Cereblon
IPR034750CULT
IPR015947PUA-like_domain
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 14..50
NoneNo IPR availableGENE3D2.30.130.40coord: 171..290
e-value: 1.6E-18
score: 66.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 94..148
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..56
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 544..576
IPR003111Lon, substrate-binding domainSMARTSM00464lon_5coord: 173..432
e-value: 3.6E-6
score: 28.8
IPR003111Lon, substrate-binding domainPFAMPF02190LON_substr_bdgcoord: 174..432
e-value: 8.8E-23
score: 81.2
IPR003111Lon, substrate-binding domainPROSITEPS51787LON_Ncoord: 174..432
score: 19.945
IPR004910Yippee/Mis18/CereblonPFAMPF03226Yippee-Mis18coord: 437..544
e-value: 5.7E-11
score: 42.4
IPR034750CULT domainPROSITEPS51788CULTcoord: 434..541
score: 44.6
IPR034750CULT domainCDDcd15777CRBN_C_likecoord: 437..537
e-value: 3.28264E-53
score: 176.664
IPR015947PUA-like domainSUPERFAMILY88697PUA domain-likecoord: 368..431
coord: 174..302

Blast
[Close]
BLAST of TCONS_00018262-protein vs. Swiss-Prot (Human)
Match: CRBN (Protein cereblon OS=Homo sapiens GN=CRBN PE=1 SV=1)

HSP 1 Score: 332.028 bits (850), Expect = 2.385e-108
Identity = 170/413 (41.16%), Postives = 255/413 (61.74%), Query Frame = 0 
Query:  142 FDTNLPTSHSYLGDDLEILHGRTIHVEGDLVSLPLYNISGIVLIPGQILPLNISHPTAVAMMKRVVSADKTFGFLIDKPGSTTTRGDHSNNREF-ASVGVTCEVLSMKEEERYGLTRLLLKAEGRQRFKLITIQSQLDGVMLGKIRILPDAYISPQPRASLVYAQHYPQCNAIRGQLVANQFHLNEEKLSSNQNRYLVGFNLKHAQLLCTSLTSIQGWTYKLYNPYFLMDCLLHEIRSWNQNLDFDNIPQNPIEFSFWITKNLPLTNEMKVELLEIDSAPLRLRKQIHFMNKFGSGLACERCKSL-ITDKDELFSLSKRGPMGAFVNPGGVIHETLTFYKANHLRLQGRATTEYSWFPGYAWTIAICKTCHRHMGWKFTATKKELKPKKFWGLVRAALKPIFKESRDKEEADE 552
            FDT+LPTSH+YLG D+E  HGRT+H +     +P+     ++LIPGQ LPL + HP  V+M++ ++  D+TF  L            +SN +E  A  G T E+ + +EE+ +G+  + +KA GRQRFK++ +++Q DG+   K++ILP+  +      S V  +   +C     + V+ +   + +     Q R          +  C +LTS   W Y LY+   LMD +  ++R W++NL  D++P NPI+FS+ +   LP+ + ++++LL+I SA  RLR ++  MNK  S L C++C+   IT K+E+FSLS  GPM A+VNP G +HETLT YKA +L L GR +TE+SWFPGYAWT+A CK C  H+GWKFTATKK++ P+KFWGL R+AL P   ++ D+   D+
Sbjct:   49 FDTSLPTSHTYLGADMEEFHGRTLHDDDSCQVIPVLPQVMMILIPGQTLPLQLFHPQEVSMVRNLIQKDRTFAVLA-----------YSNVQEREAQFGTTAEIYAYREEQDFGIEIVKVKAIGRQRFKVLELRTQSDGIQQAKVQILPECVLPST--MSAVQLESLNKCQIFPSKPVSREDQCSYKWWQKYQKR----------KFHCANLTSWPRWLYSLYDAETLMDRIKKQLREWDENLKDDSLPSNPIDFSYRVAACLPIDDVLRIQLLKIGSAIQRLRCELDIMNKCTS-LCCKQCQETEITTKNEIFSLSLCGPMAAYVNPHGYVHETLTVYKACNLNLIGRPSTEHSWFPGYAWTVAQCKICASHIGWKFTATKKDMSPQKFWGLTRSALLPTIPDTEDEISPDK 437
The following BLAST results are available for this feature:
BLAST of TCONS_00018262-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CRBN2.385e-10841.16Protein cereblon OS=Homo sapiens GN=CRBN PE=1 SV=1[more]
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