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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00018262 ID=TCONS_00018262|Name=TCONS_00018262|organism=Clytia hemisphaerica|type=transcript|length=3579bpRun BLAST on NCBI protein sequence of TCONS_00018262-protein >TCONS_00018262-protein ID=TCONS_00018262-protein|Name=TCONS_00018262-protein|organism=Clytia hemisphaerica|type=polypeptide|length=576bp MDMNEMESESESVLSMENDENIALNEEADNEDEEEVIENENEENEDNNIERun BLAST on NCBI transcript from alignment at sc0000295:173822..213880+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00018262 ID=TCONS_00018262|Name=TCONS_00018262|organism=Clytia hemisphaerica|type=transcript|length=40059bp|location=Sequence derived from alignment at sc0000295:173822..213880+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000295:173822..213880+ >TCONS_00018262 ID=TCONS_00018262|Name=TCONS_00018262|organism=Clytia hemisphaerica|type=CDS|length=22503bp|location=Sequence derived from alignment at sc0000295:173822..213880+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00018262 vs. Swiss-Prot (Human)
Match: CRBN (Protein cereblon OS=Homo sapiens GN=CRBN PE=1 SV=1) HSP 1 Score: 330.872 bits (847), Expect = 3.375e-101 Identity = 170/413 (41.16%), Postives = 255/413 (61.74%), Query Frame = 3
Query: 507 FDTNLPTSHSYLGDDLEILHGRTIHVEGDLVSLPLYNISGIVLIPGQILPLNISHPTAVAMMKRVVSADKTFGFLIDKPGSTTTRGDHSNNREF-ASVGVTCEVLSMKEEERYGLTRLLLKAEGRQRFKLITIQSQLDGVMLGKIRILPDAYISPQPRASLVYAQHYPQCNAIRGQLVANQFHLNEEKLSSNQNRYLVGFNLKHAQLLCTSLTSIQGWTYKLYNPYFLMDCLLHEIRSWNQNLDFDNIPQNPIEFSFWITKNLPLTNEMKVELLEIDSAPLRLRKQIHFMNKFGSGLACERCKSL-ITDKDELFSLSKRGPMGAFVNPGGVIHETLTFYKANHLRLQGRATTEYSWFPGYAWTIAICKTCHRHMGWKFTATKKELKPKKFWGLVRAALKPIFKESRDKEEADE 1739
FDT+LPTSH+YLG D+E HGRT+H + +P+ ++LIPGQ LPL + HP V+M++ ++ D+TF L +SN +E A G T E+ + +EE+ +G+ + +KA GRQRFK++ +++Q DG+ K++ILP+ + S V + +C + V+ + + + Q R + C +LTS W Y LY+ LMD + ++R W++NL D++P NPI+FS+ + LP+ + ++++LL+I SA RLR ++ MNK S L C++C+ IT K+E+FSLS GPM A+VNP G +HETLT YKA +L L GR +TE+SWFPGYAWT+A CK C H+GWKFTATKK++ P+KFWGL R+AL P ++ D+ D+
Sbjct: 49 FDTSLPTSHTYLGADMEEFHGRTLHDDDSCQVIPVLPQVMMILIPGQTLPLQLFHPQEVSMVRNLIQKDRTFAVLA-----------YSNVQEREAQFGTTAEIYAYREEQDFGIEIVKVKAIGRQRFKVLELRTQSDGIQQAKVQILPECVLPS--TMSAVQLESLNKCQIFPSKPVSREDQCSYKWWQKYQKR----------KFHCANLTSWPRWLYSLYDAETLMDRIKKQLREWDENLKDDSLPSNPIDFSYRVAACLPIDDVLRIQLLKIGSAIQRLRCELDIMNKCTS-LCCKQCQETEITTKNEIFSLSLCGPMAAYVNPHGYVHETLTVYKACNLNLIGRPSTEHSWFPGYAWTVAQCKICASHIGWKFTATKKDMSPQKFWGLTRSALLPTIPDTEDEISPDK 437 The following BLAST results are available for this feature:
BLAST of TCONS_00018262 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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