TCONS_00016426-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00016426-protein
Unique NameTCONS_00016426-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length126

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00016426-protein ID=TCONS_00016426-protein|Name=TCONS_00016426-protein|organism=Clytia hemisphaerica|type=polypeptide|length=126bp
MAGGKAGKDSKPKSKSTSRSSKAGLQFPVGRIHRYLKSRSTNKGRVGATA
AVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDLLI
KATIAGGGVIPHIHKSLIGKKGAKPS
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_009173XLOC_009173Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00016426TCONS_00016426Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002119Histone_H2A
IPR032454Histone_H2A_C
IPR007125Histone_H2A/H2B/H3
IPR032458Histone_H2A_CS
IPR009072Histone-fold
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
GO:0000786nucleosome
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0046982protein heterodimerization activity
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0000786 nucleosome
cellular_component GO:0005634 nucleus
molecular_function GO:0003677 DNA binding
molecular_function GO:0046982 protein heterodimerization activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002119Histone H2APRINTSPR00620HISTONEH2Acoord: 60..73
score: 84.63
coord: 15..37
score: 73.29
coord: 101..119
score: 52.63
coord: 74..88
score: 65.78
coord: 45..60
score: 71.79
IPR002119Histone H2ASMARTSM00414h2a4coord: 4..124
e-value: 3.2E-71
score: 252.6
NoneNo IPR availableGENE3D1.10.20.10coord: 4..126
e-value: 3.7E-51
score: 171.6
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..25
NoneNo IPR availableCDDcd00074H2Acoord: 23..121
e-value: 1.37793E-52
score: 162.89
IPR032454Histone H2A, C-terminal domainPFAMPF16211Histone_H2A_Ccoord: 94..126
e-value: 4.8E-12
score: 45.3
IPR007125Histone H2A/H2B/H3PFAMPF00125Histonecoord: 11..93
e-value: 2.0E-18
score: 66.9
IPR032458Histone H2A conserved sitePROSITEPS00046HISTONE_H2Acoord: 23..29
IPR009072Histone-foldSUPERFAMILY47113Histone-foldcoord: 6..101

Blast
[Close]
BLAST of TCONS_00016426-protein vs. Swiss-Prot (Human)
Match: H2AZ (Histone H2A.Z OS=Homo sapiens GN=H2AFZ PE=1 SV=2)

HSP 1 Score: 216.853 bits (551), Expect = 1.786e-74
Identity = 111/127 (87.40%), Postives = 119/127 (93.70%), Query Frame = 0 
Query:    1 MAGGKAGKDS-KPKSKSTSRSSKAGLQFPVGRIHRYLKSRSTNKGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDLLIKATIAGGGVIPHIHKSLIGKKGAKPS 126
            MAGGKAGKDS K K+K+ SRS +AGLQFPVGRIHR+LKSR+T+ GRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELD LIKATIAGGGVIPHIHKSLIGKKG + +
Sbjct:    1 MAGGKAGKDSGKAKTKAVSRSQRAGLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGKKGQQKT 127
The following BLAST results are available for this feature:
BLAST of TCONS_00016426-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
H2AZ1.786e-7487.40Histone H2A.Z OS=Homo sapiens GN=H2AFZ PE=1 SV=2[more]
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