TCONS_00016426 (transcript) - C. hemisphaerica

Overview
NameTCONS_00016426
Unique NameTCONS_00016426
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1070

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00016426 ID=TCONS_00016426|Name=TCONS_00016426|organism=Clytia hemisphaerica|type=transcript|length=1070bp
GAAAACGTAGCCCGATCGGGAAAAACCGgaattatcaataatttttcaaa
atctccgAGAAGGAGATCAAATTATTTCAGTGGCGCGTTTTAAGAtgtaa
tttgattggctaattcCTTCCAAAACGATATTGATTGGTTGATAAATTGA
CTAGGAGATGGAGCTTCACGCATATCTTTCATTCAGCAGTCACTTGAGTA
GCACAAGGGCAAGAAGATAGTaaatacaaaattgaaaatgGCTGGAGGAA
AAGCAGGTAAAGATTCCAAACCCAAAAGTAAATCCACATCAAGATCTTCG
AAAGCTGGGCTACAAtttccaGTCGGTAGGATACACAGGTATCTGAAATC
ACGATCAACGAATAAAGGACGAGTTGGTGCTACCGCTGCTGTATATAGTG
CTGCCATCTTGGAATATCTTACTGCCGAAGTTTTGGAATTAGCAGGCAAT
GCATCCAAAGATTTAAAAGTAAAACGTATCACACCAAGACATTTACAATT
GGCTATTCGTGGGGATGAAGAATTAGATTTACTAATCAAAGCTACAATTG
CTGGGGGTGgtgTTATTCCACACATTCACAAGAGTTTGATCGGCAAGAAA
GGTGCCAAACCATCATAATTTTTAGAAACTTATATAATCATTTTACCACA
ACAAAAGCCTATatttattttgtatatttttaagcaatcaTTCAATTCTC
CAACCTGCAGCTCTCAGTCCAGAATCTTGCTTTATTGTTTGCAACTTTCT
TTTCCATTGGCGCCAGAaatgtcttttattttttagtgTTTTGCAAGAAA
GTGTATATAGAAATAGGTCAACATTTTTATCACTGTTTTTATCTcacaaa
gtgtttttttcttcctttattcTTGCTATATTTGCTCATTTATCTCGGAT
ATATggaatttgttttaatttttctcattaGATATAATTTATGTTTAACT
CAAGACTTGTAAATATGATAAAAGAACTGATGTATAAAATAATTTAACCT
TTTCCTTTTAATTCTCCACCCCCTACaattgactttttatttcattttat
gtcAAAATACCTCAAATTTG
Run BLAST on NCBI

protein sequence of TCONS_00016426-protein

>TCONS_00016426-protein ID=TCONS_00016426-protein|Name=TCONS_00016426-protein|organism=Clytia hemisphaerica|type=polypeptide|length=126bp
MAGGKAGKDSKPKSKSTSRSSKAGLQFPVGRIHRYLKSRSTNKGRVGATA
AVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDLLI
KATIAGGGVIPHIHKSLIGKKGAKPS
Run BLAST on NCBI

transcript from alignment at sc0000237:397798..400520+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00016426 ID=TCONS_00016426|Name=TCONS_00016426|organism=Clytia hemisphaerica|type=transcript|length=2723bp|location=Sequence derived from alignment at sc0000237:397798..400520+ (Clytia hemisphaerica)
GAAAACGTAGCCCGATCGGGAAAAACCGgaattatcaataatttttcaaa
atctccgAGAAGGAGATCAAATTATTTCAGTGGCGCGTTTTAAGAtgtaa
tttgattggctaattcCTTCCAAAACGATATTGATTGGTTGATAAATTGA
CTAGGAGATGGAGCTTCACGCATATCTTTCATTCAGCAGTCACTTGAGTA
GCACAAGGGCAAGAAGATAGTaaatacaaaattgaaaatggtatgTTGTT
GATTTTTCCATCCACATTTCGACcttgatttcatcatttttacTTCCTCT
ATTTCATCTTATGTTATTTTCTTTATGAAAAAGTGATGATTTGTCTCATT
AAGTTAAACTATGGATCGATATTTTCAAACTTATGAGATAGACCACTAAA
TGCATTTCAATCTTTATTGTTTTCCTGTAGGCTGGAGGAAAAGCAGGTAA
AGATTCCAAACCCAAAAGTAAATCCACATCAAGATCTTCGAAAGCTGGGC
TACAAGTAAGAAATTACTGGCTACCATTTATTTTATGATTATACTGTAAG
ACTGATTCATGATTTATACACCATAACCATCAACAATTATTATTCTGTGT
GATTTGGACCAAACCTTATTGTTTGTCTCAAGTCAACTAGCGTATTGTAT
CTATAACATTGCCTAGATTTAAAGTGACAAGACAATAGTTCAGTGTTTAA
ATCATTAGTATAGGCTGCAATCATTTAACTTTCTGTTCATATTTACAAAT
ATGATCTGtcacttaaaattcaaaaattcaacaTGTGCATCATCAAAGTC
AGACATTCATAATATATTTCCAATGGAAGAAAAtaggccattccagaaaa
tttccgTTACCCCTGGCATGGACCAATTGATGCCATAGTTAGTGCAGATA
TTATCTTTCCCACGTAGAAACtcaaattgaagatttttgtgaCCTAAAAC
TCATTTATTCATAGAGTTAAGTTTTTGTTTCAAACATGTAAACTTTTATT
AACAACTTTTGTGGGTTGGAACAGCTATTATTGCACTGGCAAGATTGACT
TTTATAATAGTAACTGTAATAAATAGGCTAGAGAAAATTGTCTTTGTAGT
GAAAATCAGGGGTATATAAAAAACTGCTACTAAAAGCCAATGgcagaaaa
ttttttcttcttatcaCACCAAAACCAACATTCCAAGTTGTTAGATCAAC
TAGAGGGAGAAAAGGAATTTATTTTGATAGGGAGAACCAGGTCATTTTGT
TATTGTGGGTATTAAAGTTACCAAAAAGTATAAAACATTAGATTTGTATA
TTATTGTATAAAAATGGGTGCATGGttaagtaatagttatcacacAGTAT
ATTTTTAATACTTCAATACCAGTGTTAACTGggtttgaaaaagaagattt
tagtcatttcttgtaaccagagcagttttcgatgtaattttagtcgttga
accaaagaaattttgcactaaaattctgataaagaactaaaacaattGTA
AATCATTAGAATGctcattcaaaaaataaaaacactcttATTAACCTgat
ttgacaaacttttttagtgattttagaGGAATAAATTTAAGTAAAAGATA
CAAGAAAGTCCAAAATACGACCTCTCCCTTACCAGAGAGACTGTATTTTT
TAACGTGGTCTTGTACATGGGTTGTAAGCCAATCggattgcttatatttt
tcatattgttgTGCATATTGGCTGTGCCTGTAAACATTTcagttttcata
ttttcaaatacatccctttttcagtttccaGTCGGTAGGATACACAGGTA
TCTGAAATCACGATCAACGAATAAAGGACGAGTTGGTGCTACCGCTGCTG
TATATAGTGCTGCCATCTTGGAATATCTTACTGCCGAAGTTTTGGAATTA
GCAGGCAATGCATCCAAAGATTTAAAAGTAAAACGTATCACACCAAGACA
TTTACAATTGGCTATTCGTGGGGATGAAGAATTAGATTTACTAATCAAAG
CTACAATTGCTGGGGGTGGTAAGTGTCGTGTTAATGCCTGTTGATTGTTC
TTAAGTAAAACTTTTCTGAACCATGACGAGGTTGTCATTAAATCCTAAAT
TCAATACTTTTAGCATTAATCTGTAGTGTGATGACATAATTGAAATAGCT
TTGCTCTCTGACACACTTGGAAGTTgtattttatcaaaatcatactttat
tttctttttcaggtgTTATTCCACACATTCACAAGAGTTTGATCGGCAAG
AAAGGTGCCAAACCATCATAATTTTTAGAAACTTATATAATCATTTTACC
ACAACAAAAGCCTATatttattttgtatatttttaagcaatcaTTCAATT
CTCCAACCTGCAGCTCTCAGTCCAGAATCTTGCTTTATTGTTTGCAACTT
TCTTTTCCATTGGCGCCAGAaatgtcttttattttttagtgTTTTGCAAG
AAAGTGTATATAGAAATAGGTCAACATTTTTATCACTGTTTTTATCTcac
aaagtgtttttttcttcctttattcTTGCTATATTTGCTCATTTATCTCG
GATATATggaatttgttttaatttttctcattaGATATAATTTATGTTTA
ACTCAAGACTTGTAAATATGATAAAAGAACTGATGTATAAAATAATTTAA
CCTTTTCCTTTTAATTCTCCACCCCCTACaattgactttttatttcattt
tatgtcAAAATACCTCAAATTTG

Coding sequence (CDS) from alignment at sc0000237:397798..400520+

>TCONS_00016426 ID=TCONS_00016426|Name=TCONS_00016426|organism=Clytia hemisphaerica|type=CDS|length=1524bp|location=Sequence derived from alignment at sc0000237:397798..400520+ (Clytia hemisphaerica)
atgGCTGGAGGAAAAGCAGGTAAAGATTCCAAACCCAAAAGTAAATCCAC
ATCAAGATCTTCGAAAGCTGGGCTACAAtttccaGTCGGTAGGATACACA
GGTATCTGAAATCACGATCAACGAATAAAGGACGAGTTGGTGCTACCGCT
GCTGTATATAGTGCTGCCATCTTGGAATATCTTACTGCCGAAGTTTTGGA
ATTAGCAGGCAATGCATCCAAAGATTTAAAAGTAAAACGTATCACACCAA
GACATTTACAATTGGCTATTCGTGGGGATGAAGAATTAGATTTACTAATC
AAAGCTACAATTGCTGGGGGTGgtgTTATTCCACACATTCACAAGAGTTT
GATCGGCAAGAAAGGTGCCAAACCATCATAAatgGCTGGAGGAAAAGCAG
GTAAAGATTCCAAACCCAAAAGTAAATCCACATCAAGATCTTCGAAAGCT
GGGCTACAAtttccaGTCGGTAGGATACACAGGTATCTGAAATCACGATC
AACGAATAAAGGACGAGTTGGTGCTACCGCTGCTGTATATAGTGCTGCCA
TCTTGGAATATCTTACTGCCGAAGTTTTGGAATTAGCAGGCAATGCATCC
AAAGATTTAAAAGTAAAACGTATCACACCAAGACATTTACAATTGGCTAT
TCGTGGGGATGAAGAATTAGATTTACTAATCAAAGCTACAATTGCTGGGG
GTGgtgTTATTCCACACATTCACAAGAGTTTGATCGGCAAGAAAGGTGCC
AAACCATCATAAatgGCTGGAGGAAAAGCAGGTAAAGATTCCAAACCCAA
AAGTAAATCCACATCAAGATCTTCGAAAGCTGGGCTACAAtttccaGTCG
GTAGGATACACAGGTATCTGAAATCACGATCAACGAATAAAGGACGAGTT
GGTGCTACCGCTGCTGTATATAGTGCTGCCATCTTGGAATATCTTACTGC
CGAAGTTTTGGAATTAGCAGGCAATGCATCCAAAGATTTAAAAGTAAAAC
GTATCACACCAAGACATTTACAATTGGCTATTCGTGGGGATGAAGAATTA
GATTTACTAATCAAAGCTACAATTGCTGGGGGTGgtgTTATTCCACACAT
TCACAAGAGTTTGATCGGCAAGAAAGGTGCCAAACCATCATAAatgGCTG
GAGGAAAAGCAGGTAAAGATTCCAAACCCAAAAGTAAATCCACATCAAGA
TCTTCGAAAGCTGGGCTACAAtttccaGTCGGTAGGATACACAGGTATCT
GAAATCACGATCAACGAATAAAGGACGAGTTGGTGCTACCGCTGCTGTAT
ATAGTGCTGCCATCTTGGAATATCTTACTGCCGAAGTTTTGGAATTAGCA
GGCAATGCATCCAAAGATTTAAAAGTAAAACGTATCACACCAAGACATTT
ACAATTGGCTATTCGTGGGGATGAAGAATTAGATTTACTAATCAAAGCTA
CAATTGCTGGGGGTGgtgTTATTCCACACATTCACAAGAGTTTGATCGGC
AAGAAAGGTGCCAAACCATCATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009173XLOC_009173Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016426-exon-sc0000237-1491911889:397798..398037TCONS_00016426-exon-sc0000237-1491911889:397798..398037Clytia hemisphaericaexon
TCONS_00016426-exon-sc0000237-1510915933:397798..398037TCONS_00016426-exon-sc0000237-1510915933:397798..398037Clytia hemisphaericaexon
TCONS_00016426-exon-sc0000237-1575043694:397798..398037TCONS_00016426-exon-sc0000237-1575043694:397798..398037Clytia hemisphaericaexon
TCONS_00016426-exon-sc0000237-1491911889:398228..398302TCONS_00016426-exon-sc0000237-1491911889:398228..398302Clytia hemisphaericaexon
TCONS_00016426-exon-sc0000237-1510915933:398228..398302TCONS_00016426-exon-sc0000237-1510915933:398228..398302Clytia hemisphaericaexon
TCONS_00016426-exon-sc0000237-1575043694:398228..398302TCONS_00016426-exon-sc0000237-1575043694:398228..398302Clytia hemisphaericaexon
TCONS_00016426-exon-sc0000237-1491911889:399572..399815TCONS_00016426-exon-sc0000237-1491911889:399572..399815Clytia hemisphaericaexon
TCONS_00016426-exon-sc0000237-1510915933:399572..399815TCONS_00016426-exon-sc0000237-1510915933:399572..399815Clytia hemisphaericaexon
TCONS_00016426-exon-sc0000237-1575043694:399572..399815TCONS_00016426-exon-sc0000237-1575043694:399572..399815Clytia hemisphaericaexon
TCONS_00016426-exon-sc0000237-1491911889:400010..400520TCONS_00016426-exon-sc0000237-1491911889:400010..400520Clytia hemisphaericaexon
TCONS_00016426-exon-sc0000237-1510915933:400010..400520TCONS_00016426-exon-sc0000237-1510915933:400010..400520Clytia hemisphaericaexon
TCONS_00016426-exon-sc0000237-1575043694:400010..400520TCONS_00016426-exon-sc0000237-1575043694:400010..400520Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016426-proteinTCONS_00016426-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000237supercontigsc0000237:397798..400520 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
104.497	95.6323	20.2482	14.5149	1862.68	1400.39	390.75	416.948	247.713	256.769	181.639	172.641	97.8335	86.119	112.894	134.486	330.887	253.545	39.8161	45.0107	178.481	171.219	610.833	465.65	296.498	267.697	131.929	93.1016	369.673	426.543
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002119Histone_H2A
IPR032454Histone_H2A_C
IPR007125Histone_H2A/H2B/H3
IPR032458Histone_H2A_CS
IPR009072Histone-fold
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
GO:0000786nucleosome
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0046982protein heterodimerization activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0000786 nucleosome
cellular_component GO:0005634 nucleus
molecular_function GO:0003677 DNA binding
molecular_function GO:0046982 protein heterodimerization activity
Blast
[Close]
BLAST of TCONS_00016426 vs. Swiss-Prot (Human)
Match: H2AZ (Histone H2A.Z OS=Homo sapiens GN=H2AFZ PE=1 SV=2)

HSP 1 Score: 194.126 bits (492), Expect = 1.267e-60
Identity = 111/127 (87.40%), Postives = 119/127 (93.70%), Query Frame = 1 
Query:  238 MAGGKAGXXX-XXXXXXXXXXXXAGLQFPVGRIHRYLKSRSTNKGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDLLIKATIAGGGVIPHIHKSLIGKKGAKPS 615
            MAGGKAGKDS K K+K+ SRS +AGLQFPVGRIHR+LKSR+T+ GRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELD LIKATIAGGGVIPHIHKSLIGKKG + +
Sbjct:    1 MAGGKAGKDSGKAKTKAVSRSQRAGLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGKKGQQKT 127
The following BLAST results are available for this feature:
BLAST of TCONS_00016426 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
H2AZ1.267e-6087.40Histone H2A.Z OS=Homo sapiens GN=H2AFZ PE=1 SV=2[more]
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