TCONS_00016125-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00016125-protein
Unique NameTCONS_00016125-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length405

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00016125-protein ID=TCONS_00016125-protein|Name=TCONS_00016125-protein|organism=Clytia hemisphaerica|type=polypeptide|length=405bp
MAVAANFYDTGVVYGDQKQPGNEEIDYDFELDGQKVDEYYCLICFLLLRD
IAQMPCKHMLCKHCLDDWGKYIAELSCPKCKERFHPNQVTSNEPLDKIIK
NSLRVKCKSADECSWIGTISEYIEVHSKRCHFFELKCIFVGCNKKLKRVS
LSSHQTDCQHRPDCSYCNQLLLKTPLKDHYAICPKYPVDCPNGCCIVLQQ
SQVEYHTQHECNNRVVPCGFVRIGCREEMKQSDLLSHFDTNIHSHMKLMF
IEMDQMKKKFESDLKSTTQKVEKLQNSEDLLNATIKTLQTELSTTKTKLA
TAEKNIEELSSKGAATYQPVQLQAQPVQQNVQQNIPQQHQQHQQQKNTQV
KMSAPATPTPASQSIPVDSDEKLKQNKANAEFAAKVAAQVAARQVRTIFL
FLSTH
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_009013XLOC_009013Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00016125TCONS_00016125Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR001293Znf_TRAF
IPR013083Znf_RING/FYVE/PHD
IPR017907Znf_RING_CS
IPR008974TRAF-like
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
molecular_function GO:0008270 zinc ion binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 257..312
NoneNo IPR availableGENE3D1.20.5.50coord: 239..385
e-value: 1.1E-6
score: 27.8
NoneNo IPR availablePFAMPF13920zf-C3HC4_3coord: 38..83
e-value: 2.2E-7
score: 30.5
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 328..373
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 33..87
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 41..80
e-value: 0.0046
score: 26.2
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 41..81
score: 11.516
IPR001841Zinc finger, RING-typeCDDcd00162RINGcoord: 41..84
e-value: 0.00102956
score: 35.8844
IPR001293Zinc finger, TRAF-typePFAMPF02176zf-TRAFcoord: 179..237
e-value: 2.1E-13
score: 50.7
IPR001293Zinc finger, TRAF-typePROSITEPS50145ZF_TRAFcoord: 179..234
score: 13.459
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 104..143
e-value: 4.5E-8
score: 32.7
coord: 144..167
e-value: 9.9E-4
score: 18.8
coord: 168..193
e-value: 0.01
score: 15.6
coord: 194..238
e-value: 3.9E-8
score: 32.9
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 15..103
e-value: 3.7E-13
score: 48.6
IPR017907Zinc finger, RING-type, conserved sitePROSITEPS00518ZF_RING_1coord: 56..65
IPR008974TRAF-likeSUPERFAMILY49599TRAF domain-likecoord: 102..167

Blast
[Close]
BLAST of TCONS_00016125-protein vs. Swiss-Prot (Human)
Match: TRAF5 (TNF receptor-associated factor 5 OS=Homo sapiens GN=TRAF5 PE=1 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 7.719e-20
Identity = 82/291 (28.18%), Postives = 133/291 (45.70%), Query Frame = 0 
Query:   11 GVVYGDQKQPGNEEIDYDFE--LDGQKVDE----YYCLICFLLLRDIAQMPCKHMLCKHCLDDWGKYIAELSCPKCKERFHPNQVTSNEPLDKIIKNSLRVKCKSADECSWIGTISEYIEVHSKRCHFFELKCIFVGCNKKLKRVSLSSH-QTDCQHRPD-CSYCNQLLLKTPLKDHYA-ICPKYPVDCPNGCCIVLQQSQVEYHTQHECNNRVVPCGFVRIGCREEMKQSDLLSHFDTNIHSHMKLMFIEMDQMKKKFESDLKSTTQKVEKLQNSEDLLNATIKTLQTEL 292
            G+  G  +Q     I  DFE  ++ Q V+     Y C  C  +L +  Q  C H  C+HC+    +      CP  KE     +V  +    + + N L V C +A  C+    +  Y + H ++C F  ++C    C + + R  L  H    CQ R + C YC + ++   L++H   +CP+YPV CPN C  ++ +++V+ H    C      C F   GC    K+ +L  H  + +  HM+L+  +  Q++++     KS  QK  K+Q     L  TIK L+ E 
Sbjct:    9 GMPCGFIRQNSGNSISLDFEPSIEYQFVERLEERYKCAFCHSVLHNPHQTGCGHRFCQHCILSLRELNTVPICPVDKEVIKSQEVFKDNCCKREVLN-LYVYCSNAPGCNAKVILGRYQD-HLQQCLFQPVQCSNEKCREPVLRKDLKEHLSASCQFRKEKCLYCKKDVVVINLQNHEENLCPEYPVFCPNNCAKIILKTEVDEHLA-VCPEAEQDCPFKHYGCAVTDKRRNLQQHEHSALREHMRLVLEKNVQLEEQISDLHKSLEQKESKIQQ----LAETIKKLEKEF 292
The following BLAST results are available for this feature:
BLAST of TCONS_00016125-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TRAF57.719e-2028.18TNF receptor-associated factor 5 OS=Homo sapiens G... [more]
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