TCONS_00015713-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00015713-protein
Unique NameTCONS_00015713-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length578

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00015713-protein ID=TCONS_00015713-protein|Name=TCONS_00015713-protein|organism=Clytia hemisphaerica|type=polypeptide|length=578bp
MVQVATHMTFDKTCKNFTKKTSHNKFDNFNFHSPKINWENIKKDLQNIDW
HVILNPISDQDEQYNTFLDKCINVITENQVPSRMSKKSTKTIIPRDRRVL
MRKRLKLKKRKPTQKIHQNLIDIELKLQESYSNERKNQETNATSKIKSNP
KDFYSYAKRFSKHKPKVGPLKDPKTNQLRNDSQKMAMILQDQYTSVFMEP
LPNYNLPEITENQPNLSDIDFSEQDIIEEIDTLSSNAATGPDGFPAIFLK
QVKSQIAAPLSLIWRNILNKGYTPQLLKTSFITPIFKKGNQGLPENYRPV
ALTLHVNKIFEKIVRKRLQNHLEENNLFNNNQQGFRSGRSCLSQLLSHTE
RLIHHIEKGRNVDINLLDFSKAFDRVDYTILLHKIERNGITGKLLQWIRS
FLTGRTKQVSIDYILSKKAEVVSGLPQGSVLGPLLFLIMIQDIDTNILHS
FLSSFADDTRLMKEISNNTDVQFLQNDLDVVYQWTSLNNIQLNGLKFEHL
KYGKNEEHSSYLSDTGSPIETKMDLKDLGVTLDVNMTYSKHITNQIEKVK
SIIAWIHRTFKTRDCQVMLTLWKSLVLP
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_008767XLOC_008767Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00015713TCONS_00015713Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000477RT_dom
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000477Reverse transcriptase domainPFAMPF00078RVT_1coord: 287..502
e-value: 4.4E-37
score: 127.6
IPR000477Reverse transcriptase domainPROSITEPS50878RT_POLcoord: 266..532
score: 19.966
NoneNo IPR availableGENE3D3.30.70.270coord: 328..513
e-value: 5.7E-19
score: 68.0
NoneNo IPR availableCDDcd01650RT_nLTR_likecoord: 279..532
e-value: 3.90961E-39
score: 141.66
NoneNo IPR availableSUPERFAMILY56672DNA/RNA polymerasescoord: 289..449

Blast
[Close]
BLAST of TCONS_00015713-protein vs. Swiss-Prot (Human)
Match: LORF2 (LINE-1 retrotransposable element ORF2 protein OS=Homo sapiens PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 4.308e-19
Identity = 90/349 (25.79%), Postives = 161/349 (46.13%), Query Frame = 0 
Query:  201 LPNYNLPEITENQPNLSDIDFSEQDIIEEIDTLSSNAATGPDGFPAIFLKQVKSQIAAPLSLIWRNILNKGYTPQLLKTSFITPIFKKGNQGLP-ENYRPVALTLHVNKIFEKIVRKRLQNHLEENNLFNNNQQGFRSGRSCLSQLLSHTERLIHHI--EKGRNVDINLLDFSKAFDRVDYTILLHKIERNGITGKLLQWIRSFLTGRTKQVSIDYILSKKAEVVSGLPQGSVLGPLLFLIMIQDIDTNILHS-------------FLSSFADDTRLMKEISNNTDVQFLQNDLDVVYQWTSLNNIQLNGLKFEHLKYGKNEE-HSSYLSDTGSPIETKMDLKDLGVTL 532
            L  Y LP + + +    +   +  +I+  I++L +  + GPDGF A F ++ K ++   L  ++++I  +G  P     + I  I K G      EN+RP++L     KI  KI+  R+Q H+++  L +++Q GF  G      +   +  +I HI   K +N  I  +D  KAFD++    +L  + + GI G  L+ IR+     T  + ++    +   + +G  QG  L PLLF I+++ +   I                 LS FADD  +  E      +   QN L ++  ++ ++  ++N  K +   Y  N +  S  + +    I +K  +K LG+ L
Sbjct:  433 LDTYTLPRLNQEEVESLNRPITGSEIVAIINSLPTKKSPGPDGFTAEFYQRYKEELVPFLLKLFQSIEKEGILPNSFYEASIILIPKPGRDTTKKENFRPISLMNIDAKILNKILANRIQQHIKK--LIHHDQVGFIPGMQGWFNI-RKSINVIQHINRAKDKNHVIISIDAEKAFDKIQQPFMLKTLNKLGIDGMYLKIIRAIYDKPTANIILNGQKLEAFPLKTGTRQGCPLSPLLFNIVLEVLARAIRQEKEIKGIQLGKEEVKLSLFADDMIVYLE----NPIVSAQNLLKLISNFSKVSGYKINVQKSQAFLYNNNRQTESQIMGELPFTIASKR-IKYLGIQL 773
The following BLAST results are available for this feature:
BLAST of TCONS_00015713-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
LORF24.308e-1925.79LINE-1 retrotransposable element ORF2 protein OS=H... [more]
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