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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00015713 ID=TCONS_00015713|Name=TCONS_00015713|organism=Clytia hemisphaerica|type=transcript|length=2950bp
TGTGGTAGTACCAGTGACTTCCAAAGAGTTAGCATTACTTGACAATCTCT
TGTTTTGAACGTTCGATGGATCCAAGCAATGATACTTTTGACTTTCTCAA
TCTGGTTTGTGATGTGTTTGCTGTATGTCATATTCACATCCAGAGTGACT
CCTAAATCCTTCAAGTCCATCTTGGTTTCGATAGGAGAGCCAGTGTCTGA
GAGGTAACTTGAgtgttcttcattttttccgtatTTAAGATGTTCAAACT
TCAAGCCATTGAGCTGTATGTTGTTTAATGATGTCCATTGGTACACCACA
TCAAGGTCGTTTTGTAGAAATTGAACATCAGTGTTATTAGAGATCTCCTT
CATTAAACGTGTATCATCGGCAAATGAAGATAGAAATGAATGTAGGATGT
TAGTGTCAATATCTTGGATCATTATCAGGAAGAGAAGTGGACCAAGAACT
GATCCTTGGGGCAAGCCAGAAACGACTTCTGCTTTTTTGGAGAGGATGTA
GTCAATAGATACTTGTTTGGTCCTACCGGTAAGGAAGGATCTGATCCATT
GCAGTAATTTGCCAGTTATACCATTTCTCTCAATTTTATGGAGTAAGATT
GTATAATCTACACGGTCAAATGCCTTGCTGAAGTCAAGTAAATTAATGTC
AACGTTACGTCCTTTTTCAATGTGATGGATGAGTCGTTCTGTGTGCGAAA
GAAGTTGGCTAAGACATGATCTTCCAGACCTGAATCCTTGTTGATTATTG
TTAAAGAGGTTGTTTTCTTCTAGGTGATTTTGTAGCCGTTTTCTGACAAT
CTTCTCGAAGATCTTATTTACATGCAAAGTTAATGCTACAGGTCGATAGT
TTTCAGGTAGGCCTTGGTTGCCTTTTTTAAAGATGGGTGTGATGAAActg
gttttcaaaagttgaggTGTGTAGCCTTTGTTGAGTATATTTCTCCAGAT
TAGAGAGAGAGGGGCTGCAATCTGTGACTTgacttgttttaagaaaattg
caGGGAAGCCGTCCGGTCCTGTTGCTGCATTGGAGGATAAAGTGTCGATC
TCCTCTATAATATCTTGCTCTGAGAAGTCGATATCACTTAGATTTGGTTG
ATTTTCGGTGATTTCTGGCAAGTTGTAGTTGGGTAGGGGTTCCATAAAAA
CAGAGGTATATTGATCTTGTAGAATCATTGCCATTTTTTGACTGTCATTT
CTCAGTTGATTGGTTTTTGGATCCTTCAATGGTCCAACTTTcggtttgtg
ttttgaaaagcgTTTCGCGTACGAATAAAAATCTTTTGGAttggatttta
ttttcgaaGTAGCATTTGTTTCTTGGTTCTTTCTTTCATTGGAGTATGAT
TCTTGAAGTTTAAGTTCAATATCGATAAGATTTTGGTGTATCTTTTGAGT
TGGTTTCCTTTTCTTAAGCTTGAGGCGTTTTCGCATCAGCACTCTTCTAT
CTCTGGGTATAAtggtttttgttgatttctttgaCATTCTTGAAGGGACT
TGATTTTCAGTGATAACGTTTATGCATTTATCAAGAAAAGTATTATATTG
TTCGTCTTGGTCTGAAATGGGGTTTAAAATAACATGCCAGtcaatatttt
gtaaatcttttttaatattttcccaATTAATTTTGGGActgtgaaaatta
aaattgtcaaatttgTTGTGTGAGGTTTTCTTGGtaaaatttttacaagt
tttgtcgAAAGTCATATGGGTTGCAACTTGGACCATATGGTGATCTGAAT
GAATGGTAGGAGTGACTTGGTAGGTAGTCGAAAACCATATCTGGATTGTT
TGTTAgtaaaaagtctaaaatatttccGTCTTTATGTGTTGGTCTCTGTA
TTGTCTGATTTAAGTTTAGGTGCAtcataaaatctgttaaaatatataaa
agctGATTGTCACAGCTTGTTGTTTGTGTGTATGTATCATTGATCAATGT
GTGTGGAATATTGAAGTCTCCACAAATATAAATGTCTGGGGTGCAGTCGC
TAATGGTATCAATCTTTGAAGTTATTGAAGCGAGCATTTGAATGAACCCA
GGACCATCTGATTTGTGAATTTTGTTGGTCGGTTTTCTGTAAAGTATTCC
AAGAATAACATTAAGTTGCTTAGAGTATAGAAGGAGAGCTTCGTTTACCC
CATTGGAGAATTCCAATAGTGGTTCGAAAAGAGGAGCAATATCATCCTGT
AAATAGAAAGCCACTCCACCGCTGTATGCCATATCTAGATTTCTAGATAT
GACCTTTGGATAGCCATGTTTCTGTCAGTCCAAGAAAAATGTGATTCTCT
AACTTCAAAATTTCCCTCAAATATGGTACTGAGGGCGGTTTGGTCTGGGG
GCAAAGACCTTGGATGTTTAAAAACATGAAGTTTCTCAATGCATCATTTT
CAAGTTTGGATTGGATAGttggtttgattggttgaaattcAGATTCCCCA
AATGGGTGGTGGTGGAATTGTGGCTTGGTATCGTTGTTGATTTACCATCT
TGGACACTTTTTGAGTAGGGTGATTGTGTGGTGGTGGTTTGAGACTTTCG
TTGATGAATGAGATCATTTGCAGGCGAAAGTTGTCcagtattttgagaaa
atccaATGAATCGTTAGTTTCTCTGTGGTTCTTTGTTGGAAGATCTGATT
TCTTTGACATGGATCTGGTCCCTTTGACGTGTGCAAAAGTGCAGTGGATA
TTGAAGCATGTGCCACTTTTAACTGAGGAAGAGCACATTCTGGGGTGAAA
TTGTGCACAGTTAGTTCCAGCATTGCATCCTCTTGGACCCTTGTTTCCGT
ATTTCATGAGTTTTGGACAGGCTTTAGGATGGGTGTACTGGCAGTTTTTA
CCACGAATACCATGCTTACATTTTCCTTTCATATAGAATCAACAGGTTGG
AGGTGTATTGGTGTTGGTCTTGTTGAGATCTTTTGATTCTTCAGAGGGTT Run BLAST on NCBI protein sequence of TCONS_00015713-protein >TCONS_00015713-protein ID=TCONS_00015713-protein|Name=TCONS_00015713-protein|organism=Clytia hemisphaerica|type=polypeptide|length=578bp
MVQVATHMTFDKTCKNFTKKTSHNKFDNFNFHSPKINWENIKKDLQNIDW
HVILNPISDQDEQYNTFLDKCINVITENQVPSRMSKKSTKTIIPRDRRVL
MRKRLKLKKRKPTQKIHQNLIDIELKLQESYSNERKNQETNATSKIKSNP
KDFYSYAKRFSKHKPKVGPLKDPKTNQLRNDSQKMAMILQDQYTSVFMEP
LPNYNLPEITENQPNLSDIDFSEQDIIEEIDTLSSNAATGPDGFPAIFLK
QVKSQIAAPLSLIWRNILNKGYTPQLLKTSFITPIFKKGNQGLPENYRPV
ALTLHVNKIFEKIVRKRLQNHLEENNLFNNNQQGFRSGRSCLSQLLSHTE
RLIHHIEKGRNVDINLLDFSKAFDRVDYTILLHKIERNGITGKLLQWIRS
FLTGRTKQVSIDYILSKKAEVVSGLPQGSVLGPLLFLIMIQDIDTNILHS
FLSSFADDTRLMKEISNNTDVQFLQNDLDVVYQWTSLNNIQLNGLKFEHL
KYGKNEEHSSYLSDTGSPIETKMDLKDLGVTLDVNMTYSKHITNQIEKVK
SIIAWIHRTFKTRDCQVMLTLWKSLVLP Run BLAST on NCBI transcript from alignment at sc0000215:102214..105163 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00015713 ID=TCONS_00015713|Name=TCONS_00015713|organism=Clytia hemisphaerica|type=transcript|length=2950bp|location=Sequence derived from alignment at sc0000215:102214..105163 (Clytia hemisphaerica)
AACCCTCTGAAGAATCAAAAGATCTCAACAAGACCAACACCAATACACCT
CCAACCTGTTGATTCTATATGAAAGGAAAATGTAAGCATGGTATTCGTGG
TAAAAACTGCCAGTACACCCATCCTAAAGCCTGTCCAAAACTCATGAAAT
ACGGAAACAAGGGTCCAAGAGGATGCAATGCTGGAACTAACTGTGCACAA
TTTCACCCCAGAATGTGCTCTTCCTCAGTTAAAAGTGGCACATGCTTCAA
TATCCACTGCACTTTTGCACACGTCAAAGGGACCAGATCCATGTCAAAGA
AATCAGATCTTCCAACAAAGAACCACAGAGAAACTAACGATTCATtggat
tttctcaaaatactgGACAACTTTCGCCTGCAAATGATCTCATTCATCAA
CGAAAGTCTCAAACCACCACCACACAATCACCCTACTCAAAAAGTGTCCA
AGATGGTAAATCAACAACGATACCAAGCCACAATTCCACCACCACCCATT
TGGGGAATCTgaatttcaaccaatcaaaccaaCTATCCAATCCAAACTTG
AAAATGATGCATTGAGAAACTTCATGTTTTTAAACATCCAAGGTCTTTGC
CCCCAGACCAAACCGCCCTCAGTACCATATTTGAGGGAAATTTTGAAGTT
AGAGAATCACATTTTTCTTGGACTGACAGAAACATGGCTATCCAAAGGTC
ATATCTAGAAATCTAGATATGGCATACAGCGGTGGAGTGGCTTTCTATTT
ACAGGATGATATTGCTCCTCTTTTCGAACCACTATTGGAATTCTCCAATG
GGGTAAACGAAGCTCTCCTTCTATACTCTAAGCAACTTAATGTTATTCTT
GGAATACTTTACAGAAAACCGACCAACAAAATTCACAAATCAGATGGTCC
TGGGTTCATTCAAATGCTCGCTTCAATAACTTCAAAGATTGATACCATTA
GCGACTGCACCCCAGACATTTATATTTGTGGAGACTTCAATATTCCACAC
ACATTGATCAATGATACATACACACAAACAACAAGCTGTGACAATCagct
tttatatattttaacagattttatgaTGCACCTAAACTTAAATCAGACAA
TACAGAGACCAACACATAAAGACggaaatattttagactttttacTAACA
AACAATCCAGATATGGTTTTCGACTACCTACCAAGTCACTCCTACCATTC
ATTCAGATCACCATATGGTCCAAGTTGCAACCCATATGACTTTcgacaaa
acttgtaaaaattttaCCAAGAAAACCTCACACAAcaaatttgacaattt
taattttcacagTCCCAAAATTAATtgggaaaatattaaaaaagatttac
aaaatattgaCTGGCATGTTATTTTAAACCCCATTTCAGACCAAGACGAA
CAATATAATACTTTTCTTGATAAATGCATAAACGTTATCACTGAAAATCA
AGTCCCTTCAAGAATGtcaaagaaatcaacaaaaaccaTTATACCCAGAG
ATAGAAGAGTGCTGATGCGAAAACGCCTCAAGCTTAAGAAAAGGAAACCA
ACTCAAAAGATACACCAAAATCTTATCGATATTGAACTTAAACTTCAAGA
ATCATACTCCAATGAAAGAAAGAACCAAGAAACAAATGCTACttcgaaaa
taaaatccaaTCCAAAAGATTTTTATTCGTACGCGAAAcgcttttcaaaa
cacaaaccgAAAGTTGGACCATTGAAGGATCCAAAAACCAATCAACTGAG
AAATGACAGTCAAAAAATGGCAATGATTCTACAAGATCAATATACCTCTG
TTTTTATGGAACCCCTACCCAACTACAACTTGCCAGAAATCACCGAAAAT
CAACCAAATCTAAGTGATATCGACTTCTCAGAGCAAGATATTATAGAGGA
GATCGACACTTTATCCTCCAATGCAGCAACAGGACCGGACGGCTTCCCtg
caattttcttaaaacaagtcAAGTCACAGATTGCAGCCCCTCTCTCTCTA
ATCTGGAGAAATATACTCAACAAAGGCTACACAcctcaacttttgaaaac
cagTTTCATCACACCCATCTTTAAAAAAGGCAACCAAGGCCTACCTGAAA
ACTATCGACCTGTAGCATTAACTTTGCATGTAAATAAGATCTTCGAGAAG
ATTGTCAGAAAACGGCTACAAAATCACCTAGAAGAAAACAACCTCTTTAA
CAATAATCAACAAGGATTCAGGTCTGGAAGATCATGTCTTAGCCAACTTC
TTTCGCACACAGAACGACTCATCCATCACATTGAAAAAGGACGTAACGTT
GACATTAATTTACTTGACTTCAGCAAGGCATTTGACCGTGTAGATTATAC
AATCTTACTCCATAAAATTGAGAGAAATGGTATAACTGGCAAATTACTGC
AATGGATCAGATCCTTCCTTACCGGTAGGACCAAACAAGTATCTATTGAC
TACATCCTCTCCAAAAAAGCAGAAGTCGTTTCTGGCTTGCCCCAAGGATC
AGTTCTTGGTCCACTTCTCTTCCTGATAATGATCCAAGATATTGACACTA
ACATCCTACATTCATTTCTATCTTCATTTGCCGATGATACACGTTTAATG
AAGGAGATCTCTAATAACACTGATGTTCAATTTCTACAAAACGACCTTGA
TGTGGTGTACCAATGGACATCATTAAACAACATACAGCTCAATGGCTTGA
AGTTTGAACATCTTAAatacggaaaaaatgaagaacacTCAAGTTACCTC
TCAGACACTGGCTCTCCTATCGAAACCAAGATGGACTTGAAGGATTTAGG
AGTCACTCTGGATGTGAATATGACATACAGCAAACACATCACAAACCAGA
TTGAGAAAGTCAAAAGTATCATTGCTTGGATCCATCGAACGTTCAAAACA
AGAGATTGTCAAGTAATGCTAACTCTTTGGAAGTCACTGGTACTACCACA
Coding sequence (CDS) from alignment at sc0000215:102214..105163 >TCONS_00015713 ID=TCONS_00015713|Name=TCONS_00015713|organism=Clytia hemisphaerica|type=CDS|length=1734bp|location=Sequence derived from alignment at sc0000215:102214..105163 (Clytia hemisphaerica)
ATGGTCCAAGTTGCAACCCATATGACTTTcgacaaaacttgtaaaaattt
taCCAAGAAAACCTCACACAAcaaatttgacaattttaattttcacagTC
CCAAAATTAATtgggaaaatattaaaaaagatttacaaaatattgaCTGG
CATGTTATTTTAAACCCCATTTCAGACCAAGACGAACAATATAATACTTT
TCTTGATAAATGCATAAACGTTATCACTGAAAATCAAGTCCCTTCAAGAA
TGtcaaagaaatcaacaaaaaccaTTATACCCAGAGATAGAAGAGTGCTG
ATGCGAAAACGCCTCAAGCTTAAGAAAAGGAAACCAACTCAAAAGATACA
CCAAAATCTTATCGATATTGAACTTAAACTTCAAGAATCATACTCCAATG
AAAGAAAGAACCAAGAAACAAATGCTACttcgaaaataaaatccaaTCCA
AAAGATTTTTATTCGTACGCGAAAcgcttttcaaaacacaaaccgAAAGT
TGGACCATTGAAGGATCCAAAAACCAATCAACTGAGAAATGACAGTCAAA
AAATGGCAATGATTCTACAAGATCAATATACCTCTGTTTTTATGGAACCC
CTACCCAACTACAACTTGCCAGAAATCACCGAAAATCAACCAAATCTAAG
TGATATCGACTTCTCAGAGCAAGATATTATAGAGGAGATCGACACTTTAT
CCTCCAATGCAGCAACAGGACCGGACGGCTTCCCtgcaattttcttaaaa
caagtcAAGTCACAGATTGCAGCCCCTCTCTCTCTAATCTGGAGAAATAT
ACTCAACAAAGGCTACACAcctcaacttttgaaaaccagTTTCATCACAC
CCATCTTTAAAAAAGGCAACCAAGGCCTACCTGAAAACTATCGACCTGTA
GCATTAACTTTGCATGTAAATAAGATCTTCGAGAAGATTGTCAGAAAACG
GCTACAAAATCACCTAGAAGAAAACAACCTCTTTAACAATAATCAACAAG
GATTCAGGTCTGGAAGATCATGTCTTAGCCAACTTCTTTCGCACACAGAA
CGACTCATCCATCACATTGAAAAAGGACGTAACGTTGACATTAATTTACT
TGACTTCAGCAAGGCATTTGACCGTGTAGATTATACAATCTTACTCCATA
AAATTGAGAGAAATGGTATAACTGGCAAATTACTGCAATGGATCAGATCC
TTCCTTACCGGTAGGACCAAACAAGTATCTATTGACTACATCCTCTCCAA
AAAAGCAGAAGTCGTTTCTGGCTTGCCCCAAGGATCAGTTCTTGGTCCAC
TTCTCTTCCTGATAATGATCCAAGATATTGACACTAACATCCTACATTCA
TTTCTATCTTCATTTGCCGATGATACACGTTTAATGAAGGAGATCTCTAA
TAACACTGATGTTCAATTTCTACAAAACGACCTTGATGTGGTGTACCAAT
GGACATCATTAAACAACATACAGCTCAATGGCTTGAAGTTTGAACATCTT
AAatacggaaaaaatgaagaacacTCAAGTTACCTCTCAGACACTGGCTC
TCCTATCGAAACCAAGATGGACTTGAAGGATTTAGGAGTCACTCTGGATG
TGAATATGACATACAGCAAACACATCACAAACCAGATTGAGAAAGTCAAA
AGTATCATTGCTTGGATCCATCGAACGTTCAAAACAAGAGATTGTCAAGT
AATGCTAACTCTTTGGAAGTCACTGGTACTACCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00015713-exon-sc0000215-1491911889:102214..105163 | TCONS_00015713-exon-sc0000215-1491911889:102214..105163 | Clytia hemisphaerica | exon |
| TCONS_00015713-exon-sc0000215-1510915933:102214..105163 | TCONS_00015713-exon-sc0000215-1510915933:102214..105163 | Clytia hemisphaerica | exon |
| TCONS_00015713-exon-sc0000215-1575043694:102214..105163 | TCONS_00015713-exon-sc0000215-1575043694:102214..105163 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000215 | supercontig | sc0000215:102214..105163 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000477 | RT_dom |
Blast
The following BLAST results are available for this feature:
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