SOX5 (polypeptide) - C. hemisphaerica

Overview
NameSOX5
Unique NameTCONS_00015508-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length454

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00015508-protein ID=TCONS_00015508-protein|Name=SOX5|organism=Clytia hemisphaerica|type=polypeptide|length=454bp
MAATQPNLNVETHVHENESASMVVMQDTKPVIDVNHSSSSSILSEAAEAL
RGDEGILSDEALLRLTMTNTSGSPDVEPFLDTKNSRVKRPMNSFMVWAQT
ARKKLAEKYPHLHNAHLSKMLGKLWKMLSPEEKQPYVEEAARLDKRHKDE
HPEYKYRPRRRPKGGKRGYNATPTMMVSPSGAVGGKPYAVPTQWARVVQT
AEGETTITSPRPEAVTPQIIYGADGTQYYAVPKASFAPSMVAPSATAAGG
SVIVSPTQVAAPQQIPHQVAAAAPTASAGTATATTTSSTNYPAFVTVPMP
ATSTAIFHPVAIPVQGVHTPAYVLRPPYPGSTMYQPTMVQSVATTTTGSA
ATGVPAGTIPIAYHNIADTRIDAATHAAISKAEGTNTIVKTPDGETIVII
QRPMEGAVPMQLNKDGTVAAHPQYYQQHVVHTGQPQQEIKHQIIIDPSQT
PTAT
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_008654XLOC_008654Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00015508TCONS_00015508Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR009071HMG_box_dom
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009071High mobility group box domainSMARTSM00398hmgende2coord: 86..156
e-value: 3.0E-25
score: 99.9
IPR009071High mobility group box domainPFAMPF00505HMG_boxcoord: 87..155
e-value: 7.4E-24
score: 83.9
IPR009071High mobility group box domainGENE3D1.10.30.10coord: 80..386
e-value: 1.1E-30
score: 105.5
IPR009071High mobility group box domainPROSITEPS50118HMG_BOX_2coord: 87..155
score: 21.235
IPR009071High mobility group box domainSUPERFAMILY47095HMG-boxcoord: 80..159
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 141..177
NoneNo IPR availableCDDcd01388SOX-TCF_HMG-boxcoord: 86..157
e-value: 6.26663E-32
score: 115.473

Blast
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BLAST of SOX5 vs. Swiss-Prot (Human)
Match: SOX8 (Transcription factor SOX-8 OS=Homo sapiens GN=SOX8 PE=2 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 8.656e-33
Identity = 57/84 (67.86%), Postives = 71/84 (84.52%), Query Frame = 0 
Query:   87 VKRPMNSFMVWAQTARKKLAEKYPHLHNAHLSKMLGKLWKMLSPEEKQPYVEEAARLDKRHKDEHPEYKYRPRRRPKGGKRGYN 170
            VKRPMN+FMVWAQ AR+KLA++YPHLHNA LSK LGKLW++LS  EK+P+VEEA RL  +HK +HP+YKY+PRRR K  K G++
Sbjct:  102 VKRPMNAFMVWAQAARRKLADQYPHLHNAELSKTLGKLWRLLSESEKRPFVEEAERLRVQHKKDHPDYKYQPRRR-KSAKAGHS 184
The following BLAST results are available for this feature:
BLAST of SOX5 vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SOX88.656e-3367.86Transcription factor SOX-8 OS=Homo sapiens GN=SOX8... [more]
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