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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00015508 ID=TCONS_00015508|Name=TCONS_00015508|organism=Clytia hemisphaerica|type=transcript|length=2191bp
CTTTTGTGTAATAACATAATGGCGCCTCTATGACAATAAATATCTCAACA
AAGGCGTTTTGAAAAACCACAGAAAAACAGTATACCATTGTAGGTTTGTG
TATGAGGTTgattgttaagaaaatttttgtgttttccaGGAGAATTGAGG
GAATTGTCAAGGTATTATCCAGCTCTGGTTGGttggaagaatattttgaa
aacaacaaaaatggcGGCTACCCAACCAAATTTGAATGTGGAAACACATg
ttcatgaaaatgaaagtgcaAGTATGGTTGTAATGCAAGATACAAAGCCT
GTAATTGATGTAAACCACAGTTCCAGTAGTAGCATTCTTTCAGAAGCTGC
AGAAGCACTCCGAGGAGATGAAGGTATTTTATCAGATGAAGCCCTCCTGA
GGCTGACCATGACAAACACCTCTGGGTCACCAGATGTAGAACCATTCCTT
GATACCAAAAACAGTAGAGTGAAAAGACCAATGAACAGTTTTATGGTCTG
GGCTCAAACTGCACGTAAGAAGTTAGCAGAAAAATACCCTCATTTGCACA
ATGCGCACCTGAGTAAAATGTTGGGCAAGTTATGGAAGATGTTGTCTCCA
GAGGAAAAACAACCCTATGTCGAAGAAGCTGCTAGGCTTGATAAGAGACA
CAAAGATGAACATCCTGAGTACAAATATCGCCCACGGAGAAGACCTAAAG
GAGGAAAGCGAGGATATAACGCTACGCCTACCATGATGGTTAGTCCTTCT
GGAGCAGTTGGTGGAAAGCCTTATGCTGTTCCAACACAGTGGGCTCGTGT
TGTGCAAACTGCTGAGGGTGAAACTACAATAACTTCTCCTCGCCCAGAAG
CTGTTACACCACAAATAATTTATGGAGCTGATGGAACTCAATATTACGCT
GTGCCAAAAGCCAGTTTTGCACCAAGTATGGTGGCCCCCTCCGCCACTGC
TGCTGGAGGTTCAGTCATTGTCTCACCAACACAGGTTGCAGCACCACAAC
AAATTCCTCACCAAGTTGCAGCAGCTGCACCTACTGCTTCTGCTGGTACT
GCTACTGCAACAACTACATCATCAACAAATTATCCTGCCTTTGTTACGGT
TCCCATGCCTGCAACGTCTACTGCAATTTTTCACCCTGTTGCTATACCTG
TTCAAGGTGTTCACACTCCAGCATATGTTCTACGGCCACCCTACCCAGGA
TCAACTATGTATCAACCCACCATGGTACAATCTGTAGCGACAACAACAAC
TGGTAGTGCAGCCACTGGTGTCCCTGCTGGAACGATTCCAATAGCTTATC
ACAATATTGCAGATACAAGAATTGACGCTGCAACTCACGCAGCTATCTCT
AAAGCAGAGGGCACAAACACTATTGTAAAAACACCAGATGGAGAGACAAT
TGTTATCATTCAGCGTCCTATGGAAGGTGCTGTCCCAATGCAATTAAATA
AGGATGGTACAGTAGCAGCTCATCCTCAATATTACCAACAGCACGTCGTT
CACACTGGGCAACCACAGCAGgaaataaaacatcaaattatTATTGACCC
TTCTCAGACACCTACAGCAACTTGAATGtaataatacaaatttaaaagat
TGTTTCATTATATAACTTCTTTCGAAGGATATGATTATCCTTTTCTTTTG
TGTCATGCACCTTTTACAATAGttttgagtttgattttttcctttattaa
attttattgcTTGCCTTTGTAATATAAGCCTTTGAATTTAAAATGTACAT
TTTGTTCTAATCAAATTCATTATAATAATTCTGTACAGTAGTCAATATAA
TGTAAATaaattatatttaaagaaaaagaataccAATTTTATAATTGTAT
ATATTTATAGAAAAACTAGCACTTTAGGGATTAAAATTCAATAAgagtga
tattttttgtttatgatGTTTTATTTCGACAGTGACCTTGAAAATGTTCG
CTTTTTCATGGTGTGTTATTTGAGAACAAAAAAGCttgtcaaaacaaaat
gaatgtCATACTTAGCTTTTGTTTGCCAACAACAAATGTTTGCTTGCCAC
AAATCATTATTTTTAAGCTGTTGTTTTTGTGTATCACATGATCATTTTTA
TTCTTATATTATACTATACTTTATTATACGTATTTTttgcaatacacgtt
ttttcatttttgatgcaaattattttcaatagaattacgtc Run BLAST on NCBI protein sequence of SOX5 >TCONS_00015508-protein ID=TCONS_00015508-protein|Name=SOX5|organism=Clytia hemisphaerica|type=polypeptide|length=454bp
MAATQPNLNVETHVHENESASMVVMQDTKPVIDVNHSSSSSILSEAAEAL
RGDEGILSDEALLRLTMTNTSGSPDVEPFLDTKNSRVKRPMNSFMVWAQT
ARKKLAEKYPHLHNAHLSKMLGKLWKMLSPEEKQPYVEEAARLDKRHKDE
HPEYKYRPRRRPKGGKRGYNATPTMMVSPSGAVGGKPYAVPTQWARVVQT
AEGETTITSPRPEAVTPQIIYGADGTQYYAVPKASFAPSMVAPSATAAGG
SVIVSPTQVAAPQQIPHQVAAAAPTASAGTATATTTSSTNYPAFVTVPMP
ATSTAIFHPVAIPVQGVHTPAYVLRPPYPGSTMYQPTMVQSVATTTTGSA
ATGVPAGTIPIAYHNIADTRIDAATHAAISKAEGTNTIVKTPDGETIVII
QRPMEGAVPMQLNKDGTVAAHPQYYQQHVVHTGQPQQEIKHQIIIDPSQT
PTAT Run BLAST on NCBI transcript from alignment at sc0000212:166355..169102+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00015508 ID=TCONS_00015508|Name=TCONS_00015508|organism=Clytia hemisphaerica|type=transcript|length=2748bp|location=Sequence derived from alignment at sc0000212:166355..169102+ (Clytia hemisphaerica)
CTTTTGTGTAATAACATAATGGCGCCTCTATGACAATAAATATCTCAACA
AAGGCGTTTTGAAAAACCACAGAAAAACAGTATACCATTGTAGGTTTGTG
TATGAGGTTgattgttaagaaaatttttgtgttttccaGGAGAATTGAGG
GAATTGTCAAGGTATTATCCAGCTCTGGTTGGttggaagaatattttgaa
aacaacaaaaatggcGGCTACCCAACCAAATTTGAATGTGGAAACACATg
ttcatgaaaatgaaagtgcaAGTATGGTTGTAATGCAAGATACAAAGCCT
GTAATTGATGTAAACCACAGTTCCAGTAGTAGCATTCTTTCAGAAGCTGC
AGAAGCACTCCGAGGAGATGAAGGTATTTTATCAGATGAAGCCCTCCTGA
GGCTGACCATGACAAACACCTCTGGGTCACCAGATGTAGAACCATTCCTT
GATACCAAAAACAGTAGAGTGAAAAGACCAATGAACAGTTTTATGGTCTG
GGCTCAAACTGCACGTAAGAAGTTAGCAGAAAAATACCCTCATTTGCACA
ATGCGCACCTGAGTAAAATGTTGGGCAAGTTATGGAAGATGTTGTCTCCA
GAGGAAAAACAACCCTATGTCGAAGAAGCTGCTAGGTATAgctatatttc
aaaattatattgGCCTAAAAGTCGGTTCTAAAAAGAAGGTTCTAGTCTAA
ACTTGTAATTTCAATCcaattcaaacaaaattaaggaaaaataggatttt
aatagttgttttggagaacgcaaCGGCCtgttgaataacaaattactccg
cAACATTACTTTCCCCCAGTCAatgcaataaaaacatgataatttGTCTC
TTGGTGTATGTTTTGGAGTGATTAGTTATTTAATAGGTCGtcgcgttctc
caaaacaacttaGTACTGGGGATTAAGTGCCTCTGAACTGTACGCCCCAG
CTAGCCACTGGATGGAATGTGTAATAATAGACTTGGTCGTCTCAAAAAAG
ATgggtgttggaattagaagagggatgtcgacattagaccaacttacagt
agaCATCTCATCACAAGACTTTCctctaaaaactttcaaatgattgaaat
aataataattttttagaGCATGTGAAAAGGCGACCCTTGTAAAGTAAAAC
TGACAATTTCACTGATCcactctttcattttttttgctgcaGGCTTGATA
AGAGACACAAAGATGAACATCCTGAGTACAAATATCGCCCACGGAGAAGA
CCTAAAGGAGGAAAGCGAGGATATAACGCTACGCCTACCATGATGGTTAG
TCCTTCTGGAGCAGTTGGTGGAAAGCCTTATGCTGTTCCAACACAGTGGG
CTCGTGTTGTGCAAACTGCTGAGGGTGAAACTACAATAACTTCTCCTCGC
CCAGAAGCTGTTACACCACAAATAATTTATGGAGCTGATGGAACTCAATA
TTACGCTGTGCCAAAAGCCAGTTTTGCACCAAGTATGGTGGCCCCCTCCG
CCACTGCTGCTGGAGGTTCAGTCATTGTCTCACCAACACAGGTTGCAGCA
CCACAACAAATTCCTCACCAAGTTGCAGCAGCTGCACCTACTGCTTCTGC
TGGTACTGCTACTGCAACAACTACATCATCAACAAATTATCCTGCCTTTG
TTACGGTTCCCATGCCTGCAACGTCTACTGCAATTTTTCACCCTGTTGCT
ATACCTGTTCAAGGTGTTCACACTCCAGCATATGTTCTACGGCCACCCTA
CCCAGGATCAACTATGTATCAACCCACCATGGTACAATCTGTAGCGACAA
CAACAACTGGTAGTGCAGCCACTGGTGTCCCTGCTGGAACGATTCCAATA
GCTTATCACAATATTGCAGATACAAGAATTGACGCTGCAACTCACGCAGC
TATCTCTAAAGCAGAGGGCACAAACACTATTGTAAAAACACCAGATGGAG
AGACAATTGTTATCATTCAGCGTCCTATGGAAGGTGCTGTCCCAATGCAA
TTAAATAAGGATGGTACAGTAGCAGCTCATCCTCAATATTACCAACAGCA
CGTCGTTCACACTGGGCAACCACAGCAGgaaataaaacatcaaattatTA
TTGACCCTTCTCAGACACCTACAGCAACTTGAATGtaataatacaaattt
aaaagatTGTTTCATTATATAACTTCTTTCGAAGGATATGATTATCCTTT
TCTTTTGTGTCATGCACCTTTTACAATAGttttgagtttgattttttcct
ttattaaattttattgcTTGCCTTTGTAATATAAGCCTTTGAATTTAAAA
TGTACATTTTGTTCTAATCAAATTCATTATAATAATTCTGTACAGTAGTC
AATATAATGTAAATaaattatatttaaagaaaaagaataccAATTTTATA
ATTGTATATATTTATAGAAAAACTAGCACTTTAGGGATTAAAATTCAATA
AgagtgatattttttgtttatgatGTTTTATTTCGACAGTGACCTTGAAA
ATGTTCGCTTTTTCATGGTGTGTTATTTGAGAACAAAAAAGCttgtcaaa
acaaaatgaatgtCATACTTAGCTTTTGTTTGCCAACAACAAATGTTTGC
TTGCCACAAATCATTATTTTTAAGCTGTTGTTTTTGTGTATCACATGATC
ATTTTTATTCTTATATTATACTATACTTTATTATACGTATTTTttgcaat
acacgttttttcatttttgatgcaaattattttcaatagaattacgtc Coding sequence (CDS) from alignment at sc0000212:166355..169102+ >TCONS_00015508 ID=TCONS_00015508|Name=TCONS_00015508|organism=Clytia hemisphaerica|type=CDS|length=2730bp|location=Sequence derived from alignment at sc0000212:166355..169102+ (Clytia hemisphaerica)
atggcGGCTACCCAACCAAATTTGAATGTGGAAACACATgttcatgaaaa
tgaaagtgcaAGTATGGTTGTAATGCAAGATACAAAGCCTGTAATTGATG
TAAACCACAGTTCCAGTAGTAGCATTCTTTCAGAAGCTGCAGAAGCACTC
CGAGGAGATGAAGGTATTTTATCAGATGAAGCCCTCCTGAGGCTGACCAT
GACAAACACCTCTGGGTCACCAGATGTAGAACCATTCCTTGATACCAAAA
ACAGTAGAGTGAAAAGACCAATGAACAGTTTTATGGTCTGGGCTCAAACT
GCACGTAAGAAGTTAGCAGAAAAATACCCTCATTTGCACAATGCGCACCT
GAGTAAAATGTTGGGCAAGTTATGGAAGATGTTGTCTCCAGAGGAAAAAC
AACCCTATGTCGAAGAAGCTGCTAGGCTTGATAAGAGACACAAAGATGAA
CATCCTGAGTACAAATATCGCCCACGGAGAAGACCTAAAGGAGGAAAGCG
AGGATATAACGCTACGCCTACCATGATGGTTAGTCCTTCTGGAGCAGTTG
GTGGAAAGCCTTATGCTGTTCCAACACAGTGGGCTCGTGTTGTGCAAACT
GCTGAGGGTGAAACTACAATAACTTCTCCTCGCCCAGAAGCTGTTACACC
ACAAATAATTTATGGAGCTGATGGAACTCAATATTACGCTGTGCCAAAAG
CCAGTTTTGCACCAAGTATGGTGGCCCCCTCCGCCACTGCTGCTGGAGGT
TCAGTCATTGTCTCACCAACACAGGTTGCAGCACCACAACAAATTCCTCA
CCAAGTTGCAGCAGCTGCACCTACTGCTTCTGCTGGTACTGCTACTGCAA
CAACTACATCATCAACAAATTATCCTGCCTTTGTTACGGTTCCCATGCCT
GCAACGTCTACTGCAATTTTTCACCCTGTTGCTATACCTGTTCAAGGTGT
TCACACTCCAGCATATGTTCTACGGCCACCCTACCCAGGATCAACTATGT
ATCAACCCACCATGGTACAATCTGTAGCGACAACAACAACTGGTAGTGCA
GCCACTGGTGTCCCTGCTGGAACGATTCCAATAGCTTATCACAATATTGC
AGATACAAGAATTGACGCTGCAACTCACGCAGCTATCTCTAAAGCAGAGG
GCACAAACACTATTGTAAAAACACCAGATGGAGAGACAATTGTTATCATT
CAGCGTCCTATGGAAGGTGCTGTCCCAATGCAATTAAATAAGGATGGTAC
AGTAGCAGCTCATCCTCAATATTACCAACAGCACGTCGTTCACACTGGGC
AACCACAGCAGgaaataaaacatcaaattatTATTGACCCTTCTCAGACA
CCTACAGCAACTTGAatggcGGCTACCCAACCAAATTTGAATGTGGAAAC
ACATgttcatgaaaatgaaagtgcaAGTATGGTTGTAATGCAAGATACAA
AGCCTGTAATTGATGTAAACCACAGTTCCAGTAGTAGCATTCTTTCAGAA
GCTGCAGAAGCACTCCGAGGAGATGAAGGTATTTTATCAGATGAAGCCCT
CCTGAGGCTGACCATGACAAACACCTCTGGGTCACCAGATGTAGAACCAT
TCCTTGATACCAAAAACAGTAGAGTGAAAAGACCAATGAACAGTTTTATG
GTCTGGGCTCAAACTGCACGTAAGAAGTTAGCAGAAAAATACCCTCATTT
GCACAATGCGCACCTGAGTAAAATGTTGGGCAAGTTATGGAAGATGTTGT
CTCCAGAGGAAAAACAACCCTATGTCGAAGAAGCTGCTAGGCTTGATAAG
AGACACAAAGATGAACATCCTGAGTACAAATATCGCCCACGGAGAAGACC
TAAAGGAGGAAAGCGAGGATATAACGCTACGCCTACCATGATGGTTAGTC
CTTCTGGAGCAGTTGGTGGAAAGCCTTATGCTGTTCCAACACAGTGGGCT
CGTGTTGTGCAAACTGCTGAGGGTGAAACTACAATAACTTCTCCTCGCCC
AGAAGCTGTTACACCACAAATAATTTATGGAGCTGATGGAACTCAATATT
ACGCTGTGCCAAAAGCCAGTTTTGCACCAAGTATGGTGGCCCCCTCCGCC
ACTGCTGCTGGAGGTTCAGTCATTGTCTCACCAACACAGGTTGCAGCACC
ACAACAAATTCCTCACCAAGTTGCAGCAGCTGCACCTACTGCTTCTGCTG
GTACTGCTACTGCAACAACTACATCATCAACAAATTATCCTGCCTTTGTT
ACGGTTCCCATGCCTGCAACGTCTACTGCAATTTTTCACCCTGTTGCTAT
ACCTGTTCAAGGTGTTCACACTCCAGCATATGTTCTACGGCCACCCTACC
CAGGATCAACTATGTATCAACCCACCATGGTACAATCTGTAGCGACAACA
ACAACTGGTAGTGCAGCCACTGGTGTCCCTGCTGGAACGATTCCAATAGC
TTATCACAATATTGCAGATACAAGAATTGACGCTGCAACTCACGCAGCTA
TCTCTAAAGCAGAGGGCACAAACACTATTGTAAAAACACCAGATGGAGAG
ACAATTGTTATCATTCAGCGTCCTATGGAAGGTGCTGTCCCAATGCAATT
AAATAAGGATGGTACAGTAGCAGCTCATCCTCAATATTACCAACAGCACG
TCGTTCACACTGGGCAACCACAGCAGgaaataaaacatcaaattatTATT
GACCCTTCTCAGACACCTACAGCAACTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
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| TCONS_00015508-exon-sc0000212-1491911889:166355..166989 | TCONS_00015508-exon-sc0000212-1491911889:166355..166989 | Clytia hemisphaerica | exon |
| TCONS_00015508-exon-sc0000212-1510915933:166355..166989 | TCONS_00015508-exon-sc0000212-1510915933:166355..166989 | Clytia hemisphaerica | exon |
| TCONS_00015508-exon-sc0000212-1575043694:166355..166989 | TCONS_00015508-exon-sc0000212-1575043694:166355..166989 | Clytia hemisphaerica | exon |
| TCONS_00015508-exon-sc0000212-1491911889:167547..169102 | TCONS_00015508-exon-sc0000212-1491911889:167547..169102 | Clytia hemisphaerica | exon |
| TCONS_00015508-exon-sc0000212-1510915933:167547..169102 | TCONS_00015508-exon-sc0000212-1510915933:167547..169102 | Clytia hemisphaerica | exon |
| TCONS_00015508-exon-sc0000212-1575043694:167547..169102 | TCONS_00015508-exon-sc0000212-1575043694:167547..169102 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000212 | supercontig | sc0000212:166355..169102 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
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| IPR009071 | HMG_box_dom |
Blast
BLAST of TCONS_00015508 vs. Swiss-Prot (Human)
Match: SOX8 (Transcription factor SOX-8 OS=Homo sapiens GN=SOX8 PE=2 SV=1) HSP 1 Score: 107.071 bits (266), Expect = 1.987e-24 Identity = 46/65 (70.77%), Postives = 56/65 (86.15%), Query Frame = 1
Query: 469 VKRPMNSFMVWAQTARKKLAEKYPHLHNAHLSKMLGKLWKMLSPEEKQPYVEEAARLDKRHKDEH 663
VKRPMN+FMVWAQ AR+KLA++YPHLHNA LSK LGKLW++LS EK+P+VEEA RL +HK +H
Sbjct: 102 VKRPMNAFMVWAQAARRKLADQYPHLHNAELSKTLGKLWRLLSESEKRPFVEEAERLRVQHKKDH 166
The following BLAST results are available for this feature:
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