TCONS_00015462-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00015462-protein
Unique NameTCONS_00015462-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length430

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00015462-protein ID=TCONS_00015462-protein|Name=TCONS_00015462-protein|organism=Clytia hemisphaerica|type=polypeptide|length=430bp
MEEVFNDEQKNETNSEREQLQQHHDDTFRDENETPDKTERSQTNVNVFPP
RKKSSIASVSHQSSSSMEFDGLCPWRCGQSVTFETLNHHVYQCNKANAHD
QCPFQVLGCTYDGSIDVKEHMLIENASHASLLVPHVLKNMVSQDKTDSAM
QHQAEDTADLRRRLENESTKNSILSNEVCQLKRELAESNKKLNSLEKDMA
VVRSTFDVLLRELNSVKNQAVSEERIKSVEETTDKLKLESANVTKSVVEN
HSLIMRLDERINNVNSNLGDVDLRQQILENTSVGGRFIWKIDRLRSRIKH
SALGKVAALHSAPCFTKRFGYKFCTRLYLNGDGVGKDTHVSLFIVIMRSE
YDALLEWPFRQKVTFNLFNYANPNDSLKESFIPDVSSPSFKRPHKEMNLA
AGCPMFVTKERLETFILDDSIYIETTVGDA
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_008630XLOC_008630Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00015462TCONS_00015462Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002083MATH/TRAF_dom
IPR012227TNF_rcpt--assoc_TRAF
IPR008974TRAF-like
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0008270zinc ion binding
Vocabulary: Biological Process
TermDefinition
GO:0042981regulation of apoptotic process
GO:0007165signal transduction
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042981 regulation of apoptotic process
biological_process GO:0007165 signal transduction
molecular_function GO:0005515 protein binding
molecular_function GO:0008270 zinc ion binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 185..205
NoneNo IPR availableCOILSCoilCoilcoord: 6..26
NoneNo IPR availableGENE3D1.20.120.330coord: 134..270
e-value: 1.5E-6
score: 27.4
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..61
IPR002083MATH/TRAF domainSMARTSM00061math_3coord: 293..412
e-value: 0.0021
score: 27.3
IPR002083MATH/TRAF domainPROSITEPS50144MATHcoord: 284..427
score: 14.357
IPR012227TNF receptor-associated factor TRAFPIRSFPIRSF015614TRAFcoord: 50..429
e-value: 2.5E-67
score: 225.6
IPR008974TRAF-likeGENE3D2.60.210.10coord: 271..428
e-value: 3.4E-26
score: 91.6
IPR008974TRAF-likeSUPERFAMILY49599TRAF domain-likecoord: 284..427

Blast
[Close]
BLAST of TCONS_00015462-protein vs. Swiss-Prot (Human)
Match: TRAF3 (TNF receptor-associated factor 3 OS=Homo sapiens GN=TRAF3 PE=1 SV=2)

HSP 1 Score: 211.846 bits (538), Expect = 1.142e-62
Identity = 131/371 (35.31%), Postives = 202/371 (54.45%), Query Frame = 0 
Query:   73 CPWRCG-QSVTFETLNHHVYQCNKANAHDQCPFQVLGCTYDGS-IDVKEHMLIENASHASLL----------VPHVLKNMVSQDKTDSAMQHQAEDTADLRRRLENESTKNSILSNE--VCQLKRELAESNKKLNSLEKDMAVVRSTFDVLLRELNSVKNQAVSEERIKSVEETTDKLKLESANVTKSVVENHSLIMRLDERINNVNSNLGDVDLRQQILENTSVGGRFIWKIDRLRSRIKHSALGKVAALHSAPCFTKRFGYKFCTRLYLNGDGVGKDTHVSLFIVIMRSEYDALLEWPFRQKVTFNLFNYANPNDSLKESFIPDVSSPSFKRPHKEMNLAAGCPMFVTKERLE--TFILDDSIYIETTV 427
            CP +C  Q++    L+ H+ +C   NA   C F+  GC + G+   +K H       H +LL          V  +    V ++K+  ++ +Q          +E E  K  + +NE  +  L+R +    +KL  L+K++   R  ++    E +S+K+   S +   +  E+ DK    +  V ++     S + R D+ ++  +  L D+DLR Q+LE  S  G  IWKI   + R + + +GK  +L+S P +T  FGYK C R+YLNGDG+GK TH+SLF VIMR EYDALL WPF+QKVT  L +  +    L ++F PD +S SFK+P  EMN+A+GCP+FV +  LE  T+I DD+I+I+  V
Sbjct:  204 CPHKCSVQTLLRSELSAHLSEC--VNAPSTCSFKRYGCVFQGTNQQIKAHEASSAVQHVNLLKEWSNSLEKKVSLLQNESVEKNKSIQSLHNQI-----CSFEIEIERQKEMLRNNESKILHLQRVIDSQAEKLKELDKEIRPFRQNWE----EADSMKSSVESLQNRVTELESVDK---SAGQVARNTGLLESQLSRHDQMLSVHDIRLADMDLRFQVLETASYNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVIMRGEYDALLPWPFKQKVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLENGTYIKDDTIFIKVIV 560
The following BLAST results are available for this feature:
BLAST of TCONS_00015462-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TRAF31.142e-6235.31TNF receptor-associated factor 3 OS=Homo sapiens G... [more]
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