TCONS_00015462 (transcript) - C. hemisphaerica

Overview
NameTCONS_00015462
Unique NameTCONS_00015462
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1857

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00015462 ID=TCONS_00015462|Name=TCONS_00015462|organism=Clytia hemisphaerica|type=transcript|length=1857bp
TTaagctaaaaaataaaagaatgatAACCAATAATAAATGTAACAGAATG
TCATCTAATTAATCAGAAACTTTGAGTGAAAATGATGAATTGTTTACCAG
ATGGAAGAGGTTTTCAATGACGAACAGAAGAATGAGACAAATTCAGAAAG
GGAACAGTTGCAACAACATCATGACGATACATTCCGAGATGAAAACGAAA
CACCTGACAAAACAGAACGAAGCCagACAAACGTAAATGTATTTCCACCA
AGGAAGAAATCATCCATCGCTTCAGTGAGCCATCAGTCGTCTTCATCCAT
GGAATTTGATGGATTATGTCCATGGAGATGCGGTCAATCAGTCACCTTTG
AAACACTCAACCACCACGTGTACCAATGCAACAAAGCTAATGCGCATGAC
CAATGCCCCTTCCAGGTGTTAGGATGCACTTATGATGGATCAATAGACGT
CAAGGAGCACATGCTAATAGAGAACGCGTCACACGCTAGTCTGTTGGTAC
CTCACGTCCTCAAAAATATGGTCTCACAAGATAAGACCGATTCTGCTATG
CAACACCAAGCCGAAGATACTGCAGACTTGAGAAGACGTCTGGAAAATGA
ATCAACTAAGAACTCTATTTTATCGAACGAAGTATGTCAGTTGAAGAGAG
AACTAGCAGAGTCGAATAAAAAACTTAATTCTTTAGAGAAAGACATGGCA
GTGGTTCGATCCACTTTTGATGTGCTGCTTCGTGAATTAAACAGTGTGAA
AAATCAAGCGGTGTCAGAGGAGCGCATCAAAAGTGTGGAAGAAACAACGG
ACAAACTAAAACTGGAGAGCGCAAATGTGACAAAAAGCGTCGTGGAGAAC
CACAGCCTGATCATGCGTCTTGATGAACGAATCAATAACGTCAACTCAAA
CCTGGGTGACGTCGATTTGAGACAGCAAATACTAGAGAACACTTCTGTCG
GTGGTCGATTCATTTGGAAAATCGATCGACTGAGATCTCGCATCAAACAC
TCAGCGTTGGGTAAAGTTGCTGCTTTACACAGTGCACCGTGTTTTACTAA
AAGGTTTGGGTACAAGTTTTGCACGCGTTTATATTTGAACGGCGACGGAG
TGGGTAAAGATACGCACGTTTCGCTCTTTATTGTCATCATGCGTTCGGAG
TACGACGCTCTATTAGAATGGCCGTTTCGTCAGAAAGTGACTTTTAATTT
GTTTAACTACGCCAACCCGAACGATTCGTTAAAAGAATCGTTCATACCTG
ATGTTAGTTCGCCCAGCTTCAAACGGCCTCATAAAGAAATGAACCTTGCA
GCTGGTTGTCCGATGTTCGTAACGAAGGAACGATTGGAAACGTTCATTTT
GGATGATAGTATTTATATAGAAACTACTGTTGGAGATGCCTGATTCGCCT
TATTCTTGTTTTATCATCCTTCTGATCGAGATATGAATCCACATCTCAGC
TTTGACAATCCGTTTTTCGAGGGTAATCAAGTTCAGGCATTTTCGTTTTA
GTTGTATAGGGCAAGTAGAAAAGCCCATATGATAGGTACCTATATTGCCA
TAAAGGTTGGCATGATTGCATCTTatgagaagaaaaatgaaacaatttaC
AGAAAGTCGTTTGTGAAAACGGTTTTTGTATTTGACCAGTTCATAGCGAA
CAGATTCGAAATAAGCATTTGTATTTTCAAAGCGTATAGTAATGTATGAT
ATTAGTTGAGAGAGTTTTTTACGTTTTGTTCTTTAATTTTCATATCACTt
tgtataaatatttttaaaaatcaaaacggctaatatttttattattatta
caattttattatatgaagaaagagataACACAACGTCATAGTTAAagata
caaaaac
Run BLAST on NCBI

protein sequence of TCONS_00015462-protein

>TCONS_00015462-protein ID=TCONS_00015462-protein|Name=TCONS_00015462-protein|organism=Clytia hemisphaerica|type=polypeptide|length=430bp
MEEVFNDEQKNETNSEREQLQQHHDDTFRDENETPDKTERSQTNVNVFPP
RKKSSIASVSHQSSSSMEFDGLCPWRCGQSVTFETLNHHVYQCNKANAHD
QCPFQVLGCTYDGSIDVKEHMLIENASHASLLVPHVLKNMVSQDKTDSAM
QHQAEDTADLRRRLENESTKNSILSNEVCQLKRELAESNKKLNSLEKDMA
VVRSTFDVLLRELNSVKNQAVSEERIKSVEETTDKLKLESANVTKSVVEN
HSLIMRLDERINNVNSNLGDVDLRQQILENTSVGGRFIWKIDRLRSRIKH
SALGKVAALHSAPCFTKRFGYKFCTRLYLNGDGVGKDTHVSLFIVIMRSE
YDALLEWPFRQKVTFNLFNYANPNDSLKESFIPDVSSPSFKRPHKEMNLA
AGCPMFVTKERLETFILDDSIYIETTVGDA
Run BLAST on NCBI

transcript from alignment at sc0000211:101998..112370-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00015462 ID=TCONS_00015462|Name=TCONS_00015462|organism=Clytia hemisphaerica|type=transcript|length=10373bp|location=Sequence derived from alignment at sc0000211:101998..112370- (Clytia hemisphaerica)
TTAAGCTAAAAAATAAAAGAATGATAACCAATAATAAATGTAACAGAATG
TCATCTAATTAATCAGAAACTTTGAGGTAAGCGATTTTCTTTCATTAGAA
TATGGTATCTAACAATAGGGCTAACATCTTGTGTTGTATTCCTTTTATCA
GACTTATATGAACGAGTATGTAACGCGTATAGCAAAATTTGAATTTAATA
AGCTTCTGTCAAAAGTTCAATTTTTAGAAATAATTTGGAAACTGAATAAA
AGGTAGAAATCCTTTTCAAAATTTATTTTATTTATCTATTTAAAAAAGTC
ATGTATTGTCTAAAGGCTTCTAAGGCACGCACTTCTCTACAGTGGACTAT
TGTGCGTGGACCTACAGCTTCGGCTGCCCGGCCTCAGCGGTGTCAGCTGA
CAAAGGTTATCACAGTAACATAAATTTCAACGCTCTTAAAGTTTGAATTT
TAAATTGTTAATCTTTGACAGTGAAAATGATGAATTGTTTACCAGATGGA
AGAGGTTTTCAATGACGAACAGAAGAATGAGACAAATTCAGAAAGGGAAC
AGTTGCAACAACATCATGACGATACATTCCGAGATGAAAACGAAACACCT
GACAAAACAGAACGAAGCCAGGTATGAAATTTTTTTTTTGGACCTACCCC
GGTGGAGGTCCTATAAATTAACCTCTCTTCGTCCGTCCGTCCGTCCGTCC
GTTCGTTCGTTCGTTCGTTCGTTCGTTCGTTCGTTCGTTCGTTCGTTCGT
TCGTTCGTTCGTTCGTTCGTTCGTTCGTTCGTTCGTTCGTTCGTTCGTTC
GTTCGTTCGTTCGTTCGTTACCAACTTTTCTCGAGATTGGTTAATTAGTT
TTTTCTGATTTTTTGCACAAAGATGTGTAACTATAAACTCTCGAATGTGA
AGGAGCCCGATTTTCGAAAAAAAAAAATTTGGGGCAAATTTGGGCCAAAA
AACGGCTAAAAAATGGGTTGGATCATTAATTTTTTCTGATTTTTTGCATG
AAAGTAGGGTACCATCATAGGTAAAAGATGGCTCAAGCAGATTTTCGCCA
AAAAATTTTGTTGGCTCAAAAAACGCATGTTTATCTATAAGAATCACTAT
TAATAAGCATACATCAATGTTCGTAGTCAAATTACTAATTTTCTTATGAG
ATATATGTTTTTTTGCTCATGAGGGCTTACTTTTTTGTGTGTTTAGACAT
GAAATTTTGGTTCCTTGGCGTGTTTTTATAAAAAAACTGGCCAAATACGA
TATTTTTTTATAAGCACATTATCAATTACTTAGGTATTAGCTTTTCTCGA
GATTGGCTCTTTCATTCTTTATGATTTTTTGCACNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNCGTGTTCTGAATGATTGTTTAATGGTCACGTCACGTA
GATATCAATTATAAATATGTTAAATGCACAACCAGGTAGGTCCATAAAAG
TATCACTTGTTTTTTCCAAAAAGAACTATTTGCTTACAACACGACATTAT
GTTACAGGGAAGAACGACTTTTTCCACCTCCCGTACCGCGTGATTACAAA
TTTGAAAAAAAGCTTTATATGCAATCAAAAATGATGTGATCAAGCCGTTC
ATTTTTATGAGTAACATTTATGTTGTCATTGGTAATTAAATGAAGAAGCA
CTGAAATCTCTTTCTACTTCCTTGACTAGAGTTTGTTGATGTTTGTTGAA
ATAGCTCTTAGTGATTAACATTCTCACCTATAGTTACCTCAAAGATTCGA
ACAAATACAAAACGGTCTCGACAAATCCATCTTAAAAATTATGTAGTTTT
ATGTTCATACCTTCTTTTACACTCTCTGTATCCGATTTATAATTGATTTC
CCAAACAGGCCACTGAAACTTCAAAATCAATTCTAGGTTATGTCTTGAAA
GAGTGATATGCTGATAAATGAAAAATAAACTATTTACACTTCTTCCTCCA
ATTCCAAATCCTCGTCACTGCTATCTTCGGCGGTAATATCAACTCTCATT
CCGCATAATAATTNTCGTCACTGCTATCTTCGGCGGTAATATCGACTCTC
ATTCCGCATAATAATTCAAATTCCTCCGGAGATATATCTGCGATTGGCAG
TAAATACTGGTTACCTATGTTTATTTCGATTTTTCGGCTTTTAAAACTTG
GAAAAAACTTTCGCGATTTTTAGGAAAATTTCATTTTTCGCGAAATTAAC
TTTCGTGAATTTCTTGTTTAATTCTTTACCTGGCAGAAACTTTCGCGAAA
AAATGCCAAAAACGCGAAAAACGCGAAAGTTTCTGCCCGCGAAAGTTTCT
GCCCTTAAAGAGAGTAAGGCCAAAAAGCCTAGTCTACACAATAGACAGTT
GGAGTTTTACGCTCGAAACGAAGGAAGATATGACGTAGCCTACAAAAAGC
CTGGAGCTGTCTATTGTGTAGACTATACATTTTGAGATTTATTCACTTTG
CGAAAACAGAACGCTCGTCCCGCAACCCCTTTTATATTGATACTCGTTTT
GTGCTTTATATGACACAAAATCGTCAAATATGTCCTGAAAATTGGATAAT
TTTGTCTTTAAGTTTTAAACTTTTTGCATACAATTCTGAGTTGAATGTTG
TGGAGGACAATAGCACAAGCTTATCTATACAGGCAATTATGAATATTTAG
TAATTTATTCATGGCGTGGGGGCGTATTCATTCTTGAAACTATGAATGTT
TTGCGGGATCACCTTTATTCATCGTTACCTCGATTTTATGGCAATTAGGT
TTTTTGAATTGAACGCATGTTTTCGATTTGTATTTGGTTGCTAAGGATTT
CTGTTGGTTGCTATGGATAGTGCTTTCGTTTTGTTTGTAAATCTTTTTTA
CGTCAGAGTGTTTTGAATGCGTCTTATTGGTCCTTACATTCCATGTGTTA
ACATGTAGAAAACGTATTTTGGTACGTTGATGCGTCACTTAAAAATTCGA
AAACCAAAAAAATCATTTTCAATCAGAGTATTCAAGAGATAGACAGCGCG
TTATGGATGCTCAATTGAATTAAGGTACATATACAATCAATTCAGTGAGT
TTACAATTTGTTTTACGGTTTACCTTTATTGCTCGCCTCTTTTTGGAAAT
TCATTTTGAAAGGCTCGTAATGCACACAGATAAAATAAGGAGGTTTCAAT
CACCTTTTTTGATTATTTGGAATAAGCTTTTAATTTCTAGAGGTCAGGAC
GAAAATGTATTTTAAATCTTAATTGTTATTGGAATTTCTTCATGTGCGTT
GGTGTCGAGACCGATTATCTTAACCTGTTCTGTAGATATTTCTCTACCGA
TAACATATATTATCACCATTTTCGCTTGTTTCTTTTCTGTCGCTTATAAT
GAATCAAAATTTGTGCAGAATCTTTTTATCAGATCAAAAGAGAGGGGATG
CAATTCTTACGAAATTGAATGTTAAAAGATGACGATGTAGTGATTTGTTG
CTCTTAAGCAACTTGACACCTTTCTGGGTATATTTAGTTATGTGGTAACT
AGAGAAGTAAGAGAATATAAAAAAGAGAAAGTGTTAACACAACTTTTTTG
TCCCGACCAAATAAAATAACGGAAGGTTAGGTGAAATTGAAAGAATTTAT
ATGTGGAATATCTTACGATCTTTTGTTGCTTTTACGTAGCTGCGAAGAGT
TGCTGGTGCAGCTGGCCTTCATANATCTTACGATCTTTTGTTGCTTTTAC
GTAGCTGCGAAGAGTTGTTGGTGCAGCTGGCCTTCATCTGATATCGGCCG
ATGTTTATACTTCTTCGTTTCCCTATTTTCCATTTTCTATGTTTATTTAC
GTGTTGCAAAACATGGTTGAATTGTTTTCGTACGAATTTGCTTTGTTTAT
TAAGACACCTTTTTCATTGCTTGAACAGAACTTATTCTACGGCACATGAT
ATATACTTTTTTGTAAACTTTTGAGAAAGATTTTGGTCGAGACGAAGAGC
ATAAAAAGTAATGTAAAGCAGAATCTCTCATTTTCTCTCACTTATCAAAG
TGTTGTTGTTGTGTAAAACGTTTAAGTCGTGTGTTATGGTTAGTAGTTGA
TGGATCTTGGTAGAAGTGAGCGGTTCTGTGTGGGCACCTCAAAGATTGTT
ATAATTGTTAGGGTTGAAATTGTTTCTCATCCAATTGGTAGTTTGAAGTT
GTTTCAAACGAATGCTACTGTAGAGTTTATAAAACTTTTCCTCATGCTTA
AACGCTCCTGAAGCTTAGAACTAAGAAAGTATACACTTATTTTTGGTGCT
TTTAGTCTAAAAGGTTTAATACCCTTCTTTATTAGTTTGTCCCATAATTC
AAAGTTCAGCCATTCCAGGCTCAGCATTGTTCTTAAATTGTTCTTATTTT
TTACCAATTTTGAGGTTCATTGTTCTTGTTCGATGTTGTTAAAATTATTC
TTGTAAAAAAGAGAGGGTGTATATACTTTGTCTGGTTTTGAGGCCCGGGT
ACGATTTCCACTGACACCAATATTACTGTGTGTTCATTCGTTTTGGTAAA
TATAATAATTCATTTTGTTCGTTCCCTTTTTCAGACAAACGTAAATGTAT
TTCCACCAAGGAAGAAATCATCCATCGCTTCAGTGAGCCATCAGTCGTCT
TCATCCATGGAATTTGATGGATTATGTCCATGGAGATGCGGTCAATCAGT
CACCTTTGAAACACTCAACCACCACGTGTACCAATGCAACAAAGCTAATG
CGCATGACCAATGCCCCTTCCAGGTGTTAGGATGCACTTATGATGTGAGT
TCTTACAAGGATTTTAGAAATATGGCCACTTGCTATATATTCCGAAATGA
TTGTTTGAAGAATTTTCCTCACTTGCATGGAGTTTGGAAAAAAGCTCTTA
GGAGGAGATTTTTTCAAAGTTGATCCCATGGCTACTACAAGTTACTTTCC
AGCAAAGTTTCTGTTTAAAAGTAAAGTGTTAATGAGCGGAAAATGGATTC
TGGGATGAAGCTTTACTTGATTTTCCTGTTTTTCCAATGTTTTGTCAATA
CTTTTTACGTCAAATATTTAGAAAAGCGCGGCTTAAATTTCAAGTCCCCT
CTTAGAAACGAATAACTTGTGGTTGATTTATAAACAAACTTTGTAATATC
TCTCATCTCTATGGAAGTTCGACTTTCCCCTTTACAATGCAATCTCTCAA
ATGTTTTTTTTGGTAACTGTCTGAGGTCACTGCCCGGCTCTTTCCTTCAC
TATTACAGCTTTCATTTCGTACAAGATACAGAAAGCTTCTTTCTACGAAA
ATTTTCCGCTATGAAATGACTGAAGAAAAAACACACTTAAAAAGAATGGA
AACGATTGCGTGACAAAGTGCAAAAGGGTTTGTTTTTAATGAAGTGTTAT
AACTTCCATTGTTGCTTCTGTTTATTTATAGGGATCAATAGACGTCAAGG
AGCACATGCTAATAGAGAACGCGTCACACGCTAGTCTGTTGGTACCTCAC
GTCCTCAAAAATATGGTCTCACAAGATAAGACCGATTCTGCTATGCAACA
CCAAGCCGAAGATACTGCAGACTTGAGAAGACGTCTGGAAAATGAATCAA
CTAAGAACTCTATTTTATCGAACGAAGTATGTCAGTTGAAGAGAGAACTA
GCAGAGTCGAATAAAAAACTTAATTCTTTAGAGAAAGACATGGCAGTGGT
TCGATCCACTTTTGATGTGCTGCTTCGTGAATTAAACAGTGTGAAAAATC
AAGCGGTGTCAGAGGAGCGCATCAAAAGTGTGGAAGAAACAACGGACAAA
CTAAAATTGGAGAACGCAAATGTGACAAAAAGCGTCGTGGAGAACCACAG
TCTGATCATGCGTCTCGATGAACGAATCAATAACGTCAACTCAAACCTGG
GTGACGTCGATTTGAGACAACAAATACTAGAGAACACTTCTGTCGGTGGT
CGATTCATTTGGAAAATCGATCGACTGAGATCTCGCATCAAACACTCAGC
AGTGGGTAAGGTCNCCCCTCTTAGAAACGAATAACTTGTGGTTGATTTAT
AAACAAACTTTGTAATATCTCTCATCTCTATGGAAGTTCGACTTTCCCCT
TTACAATGCAATCTCTCAAATGTTTTTTTTGGTAACTGTCTGAGGTCACT
GCCCGGCTCTTTCCTTCACTATTACAGCTTTCATTTCGTACAAGATACAG
AAAGCTTCTTTCTACGAAAATTTTCCGCTATGAAATGACTGAAGAAAAAA
CACACTTAAAAAGAATGGAAACGATTGCGTGACAAAGTGCAAAAGGGTTT
GTTTTTAATGAAGTGTTATAACTTCCATTGTTGCTTCTGTTTATTTATAG
GGATCAATAGACGTCAAGGAGCACATGCTAATAGAGAACGCGTCACACGC
TAGTCTGTTGGTACCTCACGTCCTCAAAAATATGGTCTCACAAGATAAGA
CCGATTCTGCTATGCAACACCAAGCCGAAGATACTGCAGACTTGAGAAGA
CGTCTGGAAAATGAATCAACTAAGAACTCTATTTTATCGAACGAAGTATG
TCAGTTGAAGAGAGAACTAGCAGAGTCGAATAAAAAACTTAATTCTTTAG
AGAAAGACATGGCAGTGGTTCGATCCACTTTTGATGTGCTGCTTCGTGAA
TTAAACAGTGTGAAAAATCAAGCGGTGTCAGAGGAGCGCATCAAAAGTGT
GGAAGAAACAACGGACAAACTAAAACTGGAGAGCGCAAATGTGACAAAAA
GCGTCGTGGAGAACCACAGCCTGATCATGCGTCTTGATGAACGAATCAAT
AACGTCAACTCAAACCTGGGTGACGTCGATTTGAGACAGCAAATACTAGA
GAACACTTCTGTCGGTGGTCGATTCATTTGGAAAATCGATCGACTGAGAT
CTCGCATCAAACACTCAGCGTTGGGTAAAGTTGCTGCTTTACACAGTGCA
CCGTGTTTTACTAAAAGGTTTGGGTACAAGTTTTGCACGCGTTTATATNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGCACATGATATATA
CTTTTTTGTAAACTTTTGAGAAAGATTTTGGTCGAGACGAAGAGCATAAA
AAGTAATGTAAAGCAGAATCTCTCATTTTCTCTCACTTATCAAAGTGTTG
TTGTTGTGTAAAACGTTTGAGTCGTGTGTTATGGATGGATCTTGTTGGAA
AATAGCGGTTCTGTGTGGGGTCCTCAAAGATTGTTATAATTGTTAGGGTT
GAAATTGTTTTTCATCAATTGGTAGTTTGAAGTTGTTTCAAACGAATGCT
ACTGTAGAGTTTATAAAACTTTTCCTCATGCTTAAACGCTCCTGAAGCTT
AGAACTAAGAAAGTATACACTTATTTTTGGTGCTTTTAGTCTAAAAGGTT
TAATACCCTTCTTTATTAGTTTGTCCCATAATTCAAAGTTCAGCCATTCC
AGGCTCAGCATTGTTCTTAAATTGTTCTTATTTTTTACCAATTTTGAGGT
TCATTGTTCTTGTTCGATGTTGTTAAAATTATTCTTGTAAAAAAGAGAGG
GTGTATATACTTTGTCTGGTTTTGAGGCCCGGGTACGATTTCCACTGACA
CCAATATTACTGTGTGTTCATTCGTTTTGGTAAATATAATAATTCATTTT
GTTCGTTCCCTTTTTCAGACAAACGTAAATGTATTTCCACCAAGGAAGAA
ATCATCCATCGCTTCAGTGAGCCATCAGTCGTCTTCATCCATGGAATTTG
ATGGATTATGTCCATGGAGATGCGGTCAATCAGTCACCTTTGAAACACTC
AACCACCACGTGTACCAATGCAACAAAGCTAATGCGCATGACCAATGCCC
CTTCCAGGTGTTAGGATGCACTTATGATGTAAGTTCTTATAAATTCTTTT
AGAAATTTGACCTCTTGCTATATATTCCGAAATGATTGTCTGAAGAATTT
TCCTCACTTGCATGGAGTTTGGAAAAAAGCTCTTAGGAAGAGATTTCTTT
AAAGTTGATCCCATGGCTACTACAAGTTACCTTCCAGCAAAGTAGAGTGT
TAATAAGCGGAAAATGGATTCTGGGATGAAGCTTTACTTGATTTTCCTGT
TTTTCCAATGTTTTGTCAATACTTTTTACGTCAAATATTTAGAAAAGCGC
GGCTTAAATTTCAAGTCCCCTCTTAGAAACGAATAACTTGTGGTTGATTT
ATAAACAAACTTTGTAATATCTCTCATCTCTATGGAAGTTCGACTTTCCC
CTTTACAATGCAATCTCTCAAATGTTTTTTTTGGTAACTGTCTGAGGTCA
CTGCCCGGCTCTTTCCTTCACTATTACAGCTTTCATTTCGTACAAGATAC
AGAAAGCTTCTTTCTACGAAAATTTTCCGCTATGAAATGACTGAAGAAAA
AACACACTTAAAAAGAATGGAAACGATTGCGTGACAAAGTGCAAAAGGGT
TTGTTTTTAATGAAGTGTTATAACTTCCATTGTTGCTTCTGTTTATTTAT
AGGGATCAATAGACGTCAAGGAGCACATGCTAATAGAGAACGCGTCACAC
GCTAGTCTGTTGGTACCTCACGTCCTCAAAAATATGGTCTCACAAGATAA
GACCGATTCTGCTATGCAACACCAAGCCGAAGATACTGCAGACTTGAGAA
GACGTCTGGAAAATGAATCAACTAAGAACTCTATTTTATCGAACGAAGTA
TGTCAGTTGAAGAGAGAACTAGCAGAGTCGAATAAAAAACTTAATTCTTT
AGAGAAAGACATGGCAGTGGTTCGATCCACTTTTGATGTGCTGCTTCGTG
AATTAAACAGTGTGAAAAATCAAGCGGTGTCAGAGGAGCGCATCAAAAGT
GTGGAAGAAACAACGGACAAACTAAAACTGGAGAGCGCAAATGTGACAAA
AAGCGTCGTGGAGAACCACAGCCTGATCATGCGTCTTGATGAACGAATCA
ATAACGTCAACTCAAACCTGGGTGACGTCGATTTGAGACAGCAAATACTA
GAGAACACTTCTGTCGGTGGTCGATTCATTTGGAAAATCGATCGACTGAG
ATCTCGCATCAAACACTCAGCGTTGGGTAAAGTTGCTGCTTTACACAGTG
CACCGTGTTTTACTAAAAGGTTTGGGTACAAGTTTTGCACGCGTTTATAT
TTGAACGGCGACGGAGTGGGTAAAGATACGCACGTTTCGCTCTTTATTGT
CATCATGCGTTCGGAGTACGACGCTCTATTAGAATGGCCGTTTCGTCAGA
AAGTGACTTTTAATTTGTTTAACTACGCCAACCCGAACGATTCGTTAAAA
GAATCGTTCATACCTGATGTTAGTTCGCCCAGCTTCAAACGGCCTCATAA
AGAAATGAACCTTGCAGCTGGTTGTCCGATGTTCGTAACGAAGGAACGAT
TGGAAACGTTCATTTTGGATGATAGTATTTATATAGAAACTACTGTTGGA
GATGCCTGATTCGCCTTATTCTTGTTTTATCATCCTTCTGATCGAGATAT
GAATCCACATCTCAGCTTTGACAATCCGTTTTTCGAGGGTAATCAAGTTC
AGGCATTTTCGTTTTAGTTGTATAGGGCAAGTAGAAAAGCCCATATGATA
GGTACCTATATTGCCATAAAGGTTGGCATGATTGCATCTTATGAGAAGAA
AAATGAAACAATTTACAGAAAGTCGTTTGTGAAAACGGTTTTTGTATTTG
ACCAGTTCATAGCGAACAGATTCGAAATAAGCATTTGTATTTTCAAAGCG
TATAGTAATGTATGATATTAGTTGAGAGAGTTTTTTACGTTTTGTTCTTT
AATTTTCATATCACTTTGTATAAATATTTTTAAAAATCAAAACGGCTAAT
ATTTTTATTATTATTACAATTTTATTATATGAAGAAAGAGATAACACAAC
GTCATAGTTAAAGATACAAAAAC

Coding sequence (CDS) from alignment at sc0000211:101998..112370-

>TCONS_00015462 ID=TCONS_00015462|Name=TCONS_00015462|organism=Clytia hemisphaerica|type=CDS|length=5172bp|location=Sequence derived from alignment at sc0000211:101998..112370- (Clytia hemisphaerica)
GGATCAATAGACGTCAAGGAGCACATGCTAATAGAGAACGCGTCACACGC
TAGTCTGTTGGTACCTCACGTCCTCAAAAATATGGTCTCACAAGATAAGA
CCGATTCTGCTATGCAACACCAAGCCGAAGATACTGCAGACTTGAGAAGA
CGTCTGGAAAATGAATCAACTAAGAACTCTATTTTATCGAACGAAGTATG
TCAGTTGAAGAGAGAACTAGCAGAGTCGAATAAAAAACTTAATTCTTTAG
AGAAAGACATGGCAGTGGTTCGATCCACTTTTGATGTGCTGCTTCGTGAA
TTAAACAGTGTGAAAAATCAAGCGGTGTCAGAGGAGCGCATCAAAAGTGT
GGAAGAAACAACGGACAAACTAAAACTGGAGAGCGCAAATGTGACAAAAA
GCGTCGTGGAGAACCACAGCCTGATCATGCGTCTTGATGAACGAATCAAT
AACGTCAACTCAAACCTGGGTGACGTCGATTTGAGACAGCAAATACTAGA
GAACACTTCTGTCGGTGGTCGATTCATTTGGAAAATCGATCGACTGAGAT
CTCGCATCAAACACTCAGCGTTGGGTAAAGTTGCTGCTTTACACAGTGCA
CCGTGTTTTACTAAAAGGTTTGGGTACAAGTTTTGCACGCGTTTATATTT
GAACGGCGACGGAGTGGGTAAAGATACGCACGTTTCGCTCTTTATTGTCA
TCATGCGTTCGGAGTACGACGCTCTATTAGAATGGCCGTTTCGTCAGAAA
GTGACTTTTAATTTGTTTAACTACGCCAACCCGAACGATTCGTTAAAAGA
ATCGTTCATACCTGATGTTAGTTCGCCCAGCTTCAAACGGCCTCATAAAG
AAATGAACCTTGCAGCTGGTTGTCCGATGTTCGTAACGAAGGAACGATTG
GAAACGTTCATTTTGGATGATAGTATTTATATAGAAACTACTGTTGGAGA
TGCCTGAGTGTTAGGATGCACTTATGATACAAACGTAAATGTATTTCCAC
CAAGGAAGAAATCATCCATCGCTTCAGTGAGCCATCAGTCGTCTTCATCC
ATGGAATTTGATGGATTATGTCCATGGAGATGCGGTCAATCAGTCACCTT
TGAAACACTCAACCACCACGTGTACCAATGCAACAAAGCTAATGCGCATG
ACCAATGCCCCTTCCAGATGGAAGAGGTTTTCAATGACGAACAGAAGAAT
GAGACAAATTCAGAAAGGGAACAGTTGCAACAACATCATGACGATACATT
CCGAGATGAAAACGAAACACCTGACAAAACAGAACGAAGCCAGGGATCAA
TAGACGTCAAGGAGCACATGCTAATAGAGAACGCGTCACACGCTAGTCTG
TTGGTACCTCACGTCCTCAAAAATATGGTCTCACAAGATAAGACCGATTC
TGCTATGCAACACCAAGCCGAAGATACTGCAGACTTGAGAAGACGTCTGG
AAAATGAATCAACTAAGAACTCTATTTTATCGAACGAAGTATGTCAGTTG
AAGAGAGAACTAGCAGAGTCGAATAAAAAACTTAATTCTTTAGAGAAAGA
CATGGCAGTGGTTCGATCCACTTTTGATGTGCTGCTTCGTGAATTAAACA
GTGTGAAAAATCAAGCGGTGTCAGAGGAGCGCATCAAAAGTGTGGAAGAA
ACAACGGACAAACTAAAACTGGAGAGCGCAAATGTGACAAAAAGCGTCGT
GGAGAACCACAGCCTGATCATGCGTCTTGATGAACGAATCAATAACGTCA
ACTCAAACCTGGGTGACGTCGATTTGAGACAGCAAATACTAGAGAACACT
TCTGTCGGTGGTCGATTCATTTGGAAAATCGATCGACTGAGATCTCGCAT
CAAACACTCAGCGTTGGGTAAAGTTGCTGCTTTACACAGTGCACCGTGTT
TTACTAAAAGGTTTGGGTACAAGTTTTGCACGCGTTTATATTTGAACGGC
GACGGAGTGGGTAAAGATACGCACGTTTCGCTCTTTATTGTCATCATGCG
TTCGGAGTACGACGCTCTATTAGAATGGCCGTTTCGTCAGAAAGTGACTT
TTAATTTGTTTAACTACGCCAACCCGAACGATTCGTTAAAAGAATCGTTC
ATACCTGATGTTAGTTCGCCCAGCTTCAAACGGCCTCATAAAGAAATGAA
CCTTGCAGCTGGTTGTCCGATGTTCGTAACGAAGGAACGATTGGAAACGT
TCATTTTGGATGATAGTATTTATATAGAAACTACTGTTGGAGATGCCTGA
GTGTTAGGATGCACTTATGATACAAACGTAAATGTATTTCCACCAAGGAA
GAAATCATCCATCGCTTCAGTGAGCCATCAGTCGTCTTCATCCATGGAAT
TTGATGGATTATGTCCATGGAGATGCGGTCAATCAGTCACCTTTGAAACA
CTCAACCACCACGTGTACCAATGCAACAAAGCTAATGCGCATGACCAATG
CCCCTTCCAGATGGAAGAGGTTTTCAATGACGAACAGAAGAATGAGACAA
ATTCAGAAAGGGAACAGTTGCAACAACATCATGACGATACATTCCGAGAT
GAAAACGAAACACCTGACAAAACAGAACGAAGCCAGGGATCAATAGACGT
CAAGGAGCACATGCTAATAGAGAACGCGTCACACGCTAGTCTGTTGGTAC
CTCACGTCCTCAAAAATATGGTCTCACAAGATAAGACCGATTCTGCTATG
CAACACCAAGCCGAAGATACTGCAGACTTGAGAAGACGTCTGGAAAATGA
ATCAACTAAGAACTCTATTTTATCGAACGAAGTATGTCAGTTGAAGAGAG
AACTAGCAGAGTCGAATAAAAAACTTAATTCTTTAGAGAAAGACATGGCA
GTGGTTCGATCCACTTTTGATGTGCTGCTTCGTGAATTAAACAGTGTGAA
AAATCAAGCGGTGTCAGAGGAGCGCATCAAAAGTGTGGAAGAAACAACGG
ACAAACTAAAACTGGAGAGCGCAAATGTGACAAAAAGCGTCGTGGAGAAC
CACAGCCTGATCATGCGTCTTGATGAACGAATCAATAACGTCAACTCAAA
CCTGGGTGACGTCGATTTGAGACAGCAAATACTAGAGAACACTTCTGTCG
GTGGTCGATTCATTTGGAAAATCGATCGACTGAGATCTCGCATCAAACAC
TCAGCGTTGGGTAAAGTTGCTGCTTTACACAGTGCACCGTGTTTTACTAA
AAGGTTTGGGTACAAGTTTTGCACGCGTTTATATTTGAACGGCGACGGAG
TGGGTAAAGATACGCACGTTTCGCTCTTTATTGTCATCATGCGTTCGGAG
TACGACGCTCTATTAGAATGGCCGTTTCGTCAGAAAGTGACTTTTAATTT
GTTTAACTACGCCAACCCGAACGATTCGTTAAAAGAATCGTTCATACCTG
ATGTTAGTTCGCCCAGCTTCAAACGGCCTCATAAAGAAATGAACCTTGCA
GCTGGTTGTCCGATGTTCGTAACGAAGGAACGATTGGAAACGTTCATTTT
GGATGATAGTATTTATATAGAAACTACTGTTGGAGATGCCTGAGTGTTAG
GATGCACTTATGATACAAACGTAAATGTATTTCCACCAAGGAAGAAATCA
TCCATCGCTTCAGTGAGCCATCAGTCGTCTTCATCCATGGAATTTGATGG
ATTATGTCCATGGAGATGCGGTCAATCAGTCACCTTTGAAACACTCAACC
ACCACGTGTACCAATGCAACAAAGCTAATGCGCATGACCAATGCCCCTTC
CAGATGGAAGAGGTTTTCAATGACGAACAGAAGAATGAGACAAATTCAGA
AAGGGAACAGTTGCAACAACATCATGACGATACATTCCGAGATGAAAACG
AAACACCTGACAAAACAGAACGAAGCCAGGGATCAATAGACGTCAAGGAG
CACATGCTAATAGAGAACGCGTCACACGCTAGTCTGTTGGTACCTCACGT
CCTCAAAAATATGGTCTCACAAGATAAGACCGATTCTGCTATGCAACACC
AAGCCGAAGATACTGCAGACTTGAGAAGACGTCTGGAAAATGAATCAACT
AAGAACTCTATTTTATCGAACGAAGTATGTCAGTTGAAGAGAGAACTAGC
AGAGTCGAATAAAAAACTTAATTCTTTAGAGAAAGACATGGCAGTGGTTC
GATCCACTTTTGATGTGCTGCTTCGTGAATTAAACAGTGTGAAAAATCAA
GCGGTGTCAGAGGAGCGCATCAAAAGTGTGGAAGAAACAACGGACAAACT
AAAACTGGAGAGCGCAAATGTGACAAAAAGCGTCGTGGAGAACCACAGCC
TGATCATGCGTCTTGATGAACGAATCAATAACGTCAACTCAAACCTGGGT
GACGTCGATTTGAGACAGCAAATACTAGAGAACACTTCTGTCGGTGGTCG
ATTCATTTGGAAAATCGATCGACTGAGATCTCGCATCAAACACTCAGCGT
TGGGTAAAGTTGCTGCTTTACACAGTGCACCGTGTTTTACTAAAAGGTTT
GGGTACAAGTTTTGCACGCGTTTATATTTGAACGGCGACGGAGTGGGTAA
AGATACGCACGTTTCGCTCTTTATTGTCATCATGCGTTCGGAGTACGACG
CTCTATTAGAATGGCCGTTTCGTCAGAAAGTGACTTTTAATTTGTTTAAC
TACGCCAACCCGAACGATTCGTTAAAAGAATCGTTCATACCTGATGTTAG
TTCGCCCAGCTTCAAACGGCCTCATAAAGAAATGAACCTTGCAGCTGGTT
GTCCGATGTTCGTAACGAAGGAACGATTGGAAACGTTCATTTTGGATGAT
AGTATTTATATAGAAACTACTGTTGGAGATGCCTGAGTGTTAGGATGCAC
TTATGATACAAACGTAAATGTATTTCCACCAAGGAAGAAATCATCCATCG
CTTCAGTGAGCCATCAGTCGTCTTCATCCATGGAATTTGATGGATTATGT
CCATGGAGATGCGGTCAATCAGTCACCTTTGAAACACTCAACCACCACGT
GTACCAATGCAACAAAGCTAATGCGCATGACCAATGCCCCTTCCAGATGG
AAGAGGTTTTCAATGACGAACAGAAGAATGAGACAAATTCAGAAAGGGAA
CAGTTGCAACAACATCATGACGATACATTCCGAGATGAAAACGAAACACC
TGACAAAACAGAACGAAGCCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008630XLOC_008630Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015462-exon-sc0000211-1575043694:112295..112370TCONS_00015462-exon-sc0000211-1575043694:112295..112370Clytia hemisphaericaexon
TCONS_00015462-exon-sc0000211-1575043694:111750..111899TCONS_00015462-exon-sc0000211-1575043694:111750..111899Clytia hemisphaericaexon
TCONS_00015462-exon-sc0000211-1575043694:107348..107536TCONS_00015462-exon-sc0000211-1575043694:107348..107536Clytia hemisphaericaexon
TCONS_00015462-exon-sc0000211-1575043694:104043..104063TCONS_00015462-exon-sc0000211-1575043694:104043..104063Clytia hemisphaericaexon
TCONS_00015462-exon-sc0000211-1575043694:101998..103418TCONS_00015462-exon-sc0000211-1575043694:101998..103418Clytia hemisphaericaexon
TCONS_00015462-exon-sc0000211-1510915933:112295..112370TCONS_00015462-exon-sc0000211-1510915933:112295..112370Clytia hemisphaericaexon
TCONS_00015462-exon-sc0000211-1510915933:111750..111899TCONS_00015462-exon-sc0000211-1510915933:111750..111899Clytia hemisphaericaexon
TCONS_00015462-exon-sc0000211-1510915933:107348..107536TCONS_00015462-exon-sc0000211-1510915933:107348..107536Clytia hemisphaericaexon
TCONS_00015462-exon-sc0000211-1510915933:104043..104063TCONS_00015462-exon-sc0000211-1510915933:104043..104063Clytia hemisphaericaexon
TCONS_00015462-exon-sc0000211-1510915933:101998..103418TCONS_00015462-exon-sc0000211-1510915933:101998..103418Clytia hemisphaericaexon
TCONS_00015462-exon-sc0000211-1491911889:112295..112370TCONS_00015462-exon-sc0000211-1491911889:112295..112370Clytia hemisphaericaexon
TCONS_00015462-exon-sc0000211-1491911889:111750..111899TCONS_00015462-exon-sc0000211-1491911889:111750..111899Clytia hemisphaericaexon
TCONS_00015462-exon-sc0000211-1491911889:107348..107536TCONS_00015462-exon-sc0000211-1491911889:107348..107536Clytia hemisphaericaexon
TCONS_00015462-exon-sc0000211-1491911889:104043..104063TCONS_00015462-exon-sc0000211-1491911889:104043..104063Clytia hemisphaericaexon
TCONS_00015462-exon-sc0000211-1491911889:101998..103418TCONS_00015462-exon-sc0000211-1491911889:101998..103418Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015462-proteinTCONS_00015462-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000211supercontigsc0000211:101998..112370 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.84292	1.74151	0.692908	0.518407	2.31875	2.15094	2.24163	0.667557	7.63514e-05	0.0335202	0.49138	1.63995e-07	0	6.87619e-07	0	0.502493	1.40034	2.36764e-10	0	0	1.5378	1.7286	4.32895	5.50937	3.35932	3.74982	0.326246	0.698991	4.04185	2.59241
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002083MATH/TRAF_dom
IPR012227TNF_rcpt--assoc_TRAF
IPR008974TRAF-like
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0008270zinc ion binding
Vocabulary: Biological Process
TermDefinition
GO:0042981regulation of apoptotic process
GO:0007165signal transduction
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042981 regulation of apoptotic process
biological_process GO:0007165 signal transduction
molecular_function GO:0005515 protein binding
molecular_function GO:0008270 zinc ion binding
Blast
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BLAST of TCONS_00015462 vs. Swiss-Prot (Human)
Match: TRAF3 (TNF receptor-associated factor 3 OS=Homo sapiens GN=TRAF3 PE=1 SV=2)

HSP 1 Score: 211.46 bits (537), Expect = 9.542e-60
Identity = 131/371 (35.31%), Postives = 202/371 (54.45%), Query Frame = 2 
Query:  317 CPWRCG-QSVTFETLNHHVYQCNKANAHDQCPFQVLGCTYDGS-IDVKEHMLIENASHASLL----------VPHVLKNMVSQDKTDSAMQHQAEDTADLRRRLENESTKNSILSNE--VCQLKRELAESNKKLNSLEKDMAVVRSTFDVLLRELNSVKNQAVSEERIKSVEETTDKLKLESANVTKSVVENHSLIMRLDERINNVNSNLGDVDLRQQILENTSVGGRFIWKIDRLRSRIKHSALGKVAALHSAPCFTKRFGYKFCTRLYLNGDGVGKDTHVSLFIVIMRSEYDALLEWPFRQKVTFNLFNYANPNDSLKESFIPDVSSPSFKRPHKEMNLAAGCPMFVTKERLE--TFILDDSIYIETTV 1381
            CP +C  Q++    L+ H+ +C   NA   C F+  GC + G+   +K H       H +LL          V  +    V ++K+  ++ +Q          +E E  K  + +NE  +  L+R +    +KL  L+K++   R  ++    E +S+K+   S +   +  E+ DK    +  V ++     S + R D+ ++  +  L D+DLR Q+LE  S  G  IWKI   + R + + +GK  +L+S P +T  FGYK C R+YLNGDG+GK TH+SLF VIMR EYDALL WPF+QKVT  L +  +    L ++F PD +S SFK+P  EMN+A+GCP+FV +  LE  T+I DD+I+I+  V
Sbjct:  204 CPHKCSVQTLLRSELSAHLSEC--VNAPSTCSFKRYGCVFQGTNQQIKAHEASSAVQHVNLLKEWSNSLEKKVSLLQNESVEKNKSIQSLHNQI-----CSFEIEIERQKEMLRNNESKILHLQRVIDSQAEKLKELDKEIRPFRQNWE----EADSMKSSVESLQNRVTELESVDK---SAGQVARNTGLLESQLSRHDQMLSVHDIRLADMDLRFQVLETASYNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVIMRGEYDALLPWPFKQKVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLENGTYIKDDTIFIKVIV 560
The following BLAST results are available for this feature:
BLAST of TCONS_00015462 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TRAF39.542e-6035.31TNF receptor-associated factor 3 OS=Homo sapiens G... [more]
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