TCONS_00015416-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00015416-protein
Unique NameTCONS_00015416-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length171

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00015416-protein ID=TCONS_00015416-protein|Name=TCONS_00015416-protein|organism=Clytia hemisphaerica|type=polypeptide|length=171bp
MDPRTKRRLNSQKRRDRRRTTNVFAKLSQEKIQTYKEIFTMLDGDADSII
SKKDLSTMFTSLGMTDMTEQKINEMIAESSGTLNFTAFLAMFAQMTCDMD
SDETIRNAFLVLDNGNGVCDAIEFQHLLVTYGNDRLSHDETQNIMRNIPV
DVNGMMDVKQASKLFTFNEAE
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_008613XLOC_008613Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00015416TCONS_00015416Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002048EF_hand_dom
IPR011992EF-hand-dom_pair
Vocabulary: Molecular Function
TermDefinition
GO:0005509calcium ion binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005509 calcium ion binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.10.238.10coord: 62..86
e-value: 4.5E-5
score: 23.0
NoneNo IPR availableGENE3D1.10.238.10coord: 21..61
e-value: 1.7E-7
score: 30.6
NoneNo IPR availableGENE3D1.10.238.10coord: 87..170
e-value: 2.9E-9
score: 36.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..20
IPR002048EF-hand domainPROSITEPS50222EF_HAND_2coord: 30..65
score: 10.664
IPR002048EF-hand domainPROSITEPS50222EF_HAND_2coord: 136..171
score: 5.085
IPR002048EF-hand domainPROSITEPS50222EF_HAND_2coord: 100..134
score: 5.698
IPR011992EF-hand domain pairSUPERFAMILY47473EF-handcoord: 27..159

Blast
[Close]
BLAST of TCONS_00015416-protein vs. Swiss-Prot (Human)
Match: MLRV (Myosin regulatory light chain 2, ventricular/cardiac muscle isoform OS=Homo sapiens GN=MYL2 PE=1 SV=3)

HSP 1 Score: 107.071 bits (266), Expect = 6.032e-30
Identity = 60/158 (37.97%), Postives = 85/158 (53.80%), Query Frame = 0 
Query:   13 KRRDRRRTTNVFAKLSQEKIQTYKEIFTMLDGDADSIISKKDLSTMFTSLGMTDMTEQKINEMIAESSGTLNFTAFLAMFAQMTCDMDSDETIRNAFLVLD-NGNGVCDAIEFQHLLVTYGNDRLSHDETQNIMRNIPVDVNGMMDVKQASKLFTFNE 169
            K+R     +NVF+   Q +IQ +KE FT++D + D  I K DL   F +LG  ++  ++I+EMI E+ G +NFT FL MF +     D +ETI NAF V D  G GV  A   + +L T   +R S +E   +    P DV G +D K    + T  E
Sbjct:    7 KKRAGGANSNVFSMFEQTQIQEFKEAFTIMDQNRDGFIDKNDLRDTFAALGRVNVKNEEIDEMIKEAPGPINFTVFLTMFGEKLKGADPEETILNAFKVFDPEGKGVLKADYVREMLTTQA-ERFSKEEVDQMFAAFPPDVTGNLDYKNLVHIITHGE 163
The following BLAST results are available for this feature:
BLAST of TCONS_00015416-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MLRV6.032e-3037.97Myosin regulatory light chain 2, ventricular/cardi... [more]
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