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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00015416 ID=TCONS_00015416|Name=TCONS_00015416|organism=Clytia hemisphaerica|type=transcript|length=858bp
CAGAAGTTGGGAAAATGAAGAGAGAAACAAAAAGAAGTGCTTGGAAATAT
TTTAAAGTATATGTAAAAGATGTAATAGACGTACAAAAGATTTTCGCCCA
AAGAATGCCTTgttatgaattaaaattgacgtcatgatatgaagatgaaa
attatttgacgtcaaaaagcaaagttccgAAGAGgtgaaagaaacaaaaa
cctGCATTCAATAAacagaaaatttcgaattgaACGACGATCAGGAGGCA
GATCTTGGAAAGCATGGATCCACGAACAAAGCGACGATTGAATTCTCAAA
AGAGACGCGATCGAAGGCGTACGACTAACGTTTTTGCTAAACTTTCGCAA
GAGAAGATTCAAACTTACAAAGAGATTTTCACTATGCTGGATGGAGATGC
AGATTCCATCATTTCAAAGAAAGATCTTTCAACCATGTTTACTTCCTTGG
GAATGACTGACATGACTGAACAGAAGATAAACGAAATGATCGCCGAGTCG
AGTGGAACATTAAATTTTACGGCTTTTCTTGCTATGTTTGCTCAAATGAC
TTGTGATATGGACTCAGATGAGACCATCAGAAACGCGTTCTTAGTGTTAG
ACAACGGTAACGGAGTATGTGACGCTATAGAGTTCCAACATTTGTTAGTG
ACGTACGGCAATGACCGGTTGTCGCACGACGAAACGCAGAACATCATGCG
GAACATTCCCGTCGACGTTAACGGCATGATGGACGTCAAACAAGCCTCCA
AGTTGTTCACGTTCAATGAAGCTgaataattattattttccAGTTCTTGT
TTTTAGTCTACTTTCTtttggattttttaaataaatttatttaatttgaa
attttgtg Run BLAST on NCBI protein sequence of TCONS_00015416-protein >TCONS_00015416-protein ID=TCONS_00015416-protein|Name=TCONS_00015416-protein|organism=Clytia hemisphaerica|type=polypeptide|length=171bp
MDPRTKRRLNSQKRRDRRRTTNVFAKLSQEKIQTYKEIFTMLDGDADSII
SKKDLSTMFTSLGMTDMTEQKINEMIAESSGTLNFTAFLAMFAQMTCDMD
SDETIRNAFLVLDNGNGVCDAIEFQHLLVTYGNDRLSHDETQNIMRNIPV
DVNGMMDVKQASKLFTFNEAE Run BLAST on NCBI transcript from alignment at sc0000211:67978..69546+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00015416 ID=TCONS_00015416|Name=TCONS_00015416|organism=Clytia hemisphaerica|type=transcript|length=1569bp|location=Sequence derived from alignment at sc0000211:67978..69546+ (Clytia hemisphaerica)
CAGAAGTTGGGAAAATGAAGAGAGAAACAAAAAGAAGTGCTTGGAAATAT
TTTAAAGTATATGTAAAAGATGTAATAGACGTACAAAAGATTTTCGCCCA
AAGAATGCCTTgttatgaattaaaattgacgtcatgatatgaagatgaaa
attatttgacgtcaaaaagcaaagttccgAAGAGgtgaaagaaacaaaaa
cctGCATTCAATAAacagaaaatttcgaattgaACGACGATCAGGAGGCA
GATCTTGGAAAGCATGGATCCACGAACAAAGCGACGATTGAATTCTCAAA
AGAGACGCGATCGAAGGCGTACGACTAACGTTTTTGCTAAACTTTCGCAA
GAGAAGATTCAAACTTACAAAGAGATTTTCACTATGCTGGATGGAGATGC
AGATTCCATCATTTCAAAGAAAGATCTTTCAACCATGTTTACTTCCTTGG
GAATGACTGACATGACTGAACAGAAGATAAACGAAATGATCGCCGAGTCG
AGTGGAACATTAAATTTCACGGCTTTTCTTGCTATGTTTGCTCAAATGAC
TTGTGATATGGACTCAGATGAGGTGAGCTTGttttcaaaatcagattttt
ttgaCTCGGTCCTACATACAACTATGGCCATAATATTTAACAAAAGGAAT
TTtcctgcaaaatttttaaaaccgNGAACATTAAATTTTACGGCTTTTCT
TGCTATGTTTGCTCAAATGACTTGTGATATGGACTCAGATGAGGTGAGCT
TGttttcaaaatcagattttttttgcACGGTGCTAATAACCTGTTTTACC
CTGTCTTGACCCTCAATAGTCAGGACCGATAaataatacacgggtttcga
attaaaccACGCACgcgaaaaaattgtttttctttttaaattctaaGATC
ATACAATTGTCTTATCATTTTATTCTCCCAAACAGTATGCCAAAATGAgt
taaaattgctttttttgCACGGCcgatttttctgttttgtttacttgatc
tttttttcgtgcaaattacaTGAAATCAAACCAAAAGCTAATTATAGGAG
GTAAAGAGGCCAATGCCGTACAATTGGACGGATTGGTTAGGAATGGCTTG
TATGCCCCTTCAACGCGTCTGTCAGAGTAATCAATAGCGTGAATGGGGGG
ATATAAGCCATGAGTTTGAGGGTGAGTCCTATCAAACTAATTGAAAATTG
TTATTAGAAGGTTATGTATAattacattattttttcattcttttcggATC
CTTACCAATGACtaaattctttatttctttcAGACCATCAGAAACGCGTT
CTTAGTGTTAGACAACGGTAACGGAGTATGTGACGCTATAGAGTTCCAAC
ATTTGTTAGTGACGTACGGCAATGACCGGTTGTCGCACGACGAAACGCAG
AACATCATGCGGAACATTCCCGTCGACGTTAACGGCATGATGGACGTCAA
ACAAGCCTCCAAGTTGTTCACGTTCAATGAAGCTgaataattattatttt
ccAGTTCTTGTTTTTAGTCTACTTTCTtttggattttttaaataaattta
tttaatttgaaattttgtg Coding sequence (CDS) from alignment at sc0000211:67978..69546+ >TCONS_00015416 ID=TCONS_00015416|Name=TCONS_00015416|organism=Clytia hemisphaerica|type=CDS|length=1548bp|location=Sequence derived from alignment at sc0000211:67978..69546+ (Clytia hemisphaerica)
ATGGATCCACGAACAAAGCGACGATTGAATTCTCAAAAGAGACGCGATCG
AAGGCGTACGACTAACGTTTTTGCTAAACTTTCGCAAGAGAAGATTCAAA
CTTACAAAGAGATTTTCACTATGCTGGATGGAGATGCAGATTCCATCATT
TCAAAGAAAGATCTTTCAACCATGTTTACTTCCTTGGGAATGACTGACAT
GACTGAACAGAAGATAAACGAAATGATCGCCGAGTCGAGTGGAACATTAA
ATTTTACGGCTTTTCTTGCTATGTTTGCTCAAATGACTTGTGATATGGAC
TCAGATGAGACCATCAGAAACGCGTTCTTAGTGTTAGACAACGGTAACGG
AGTATGTGACGCTATAGAGTTCCAACATTTGTTAGTGACGTACGGCAATG
ACCGGTTGTCGCACGACGAAACGCAGAACATCATGCGGAACATTCCCGTC
GACGTTAACGGCATGATGGACGTCAAACAAGCCTCCAAGTTGTTCACGTT
CAATGAAGCTgaataaATGGATCCACGAACAAAGCGACGATTGAATTCTC
AAAAGAGACGCGATCGAAGGCGTACGACTAACGTTTTTGCTAAACTTTCG
CAAGAGAAGATTCAAACTTACAAAGAGATTTTCACTATGCTGGATGGAGA
TGCAGATTCCATCATTTCAAAGAAAGATCTTTCAACCATGTTTACTTCCT
TGGGAATGACTGACATGACTGAACAGAAGATAAACGAAATGATCGCCGAG
TCGAGTGGAACATTAAATTTTACGGCTTTTCTTGCTATGTTTGCTCAAAT
GACTTGTGATATGGACTCAGATGAGACCATCAGAAACGCGTTCTTAGTGT
TAGACAACGGTAACGGAGTATGTGACGCTATAGAGTTCCAACATTTGTTA
GTGACGTACGGCAATGACCGGTTGTCGCACGACGAAACGCAGAACATCAT
GCGGAACATTCCCGTCGACGTTAACGGCATGATGGACGTCAAACAAGCCT
CCAAGTTGTTCACGTTCAATGAAGCTgaataaATGGATCCACGAACAAAG
CGACGATTGAATTCTCAAAAGAGACGCGATCGAAGGCGTACGACTAACGT
TTTTGCTAAACTTTCGCAAGAGAAGATTCAAACTTACAAAGAGATTTTCA
CTATGCTGGATGGAGATGCAGATTCCATCATTTCAAAGAAAGATCTTTCA
ACCATGTTTACTTCCTTGGGAATGACTGACATGACTGAACAGAAGATAAA
CGAAATGATCGCCGAGTCGAGTGGAACATTAAATTTTACGGCTTTTCTTG
CTATGTTTGCTCAAATGACTTGTGATATGGACTCAGATGAGACCATCAGA
AACGCGTTCTTAGTGTTAGACAACGGTAACGGAGTATGTGACGCTATAGA
GTTCCAACATTTGTTAGTGACGTACGGCAATGACCGGTTGTCGCACGACG
AAACGCAGAACATCATGCGGAACATTCCCGTCGACGTTAACGGCATGATG
GACGTCAAACAAGCCTCCAAGTTGTTCACGTTCAATGAAGCTgaataa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00015416-exon-sc0000211-1491911889:67978..68485 | TCONS_00015416-exon-sc0000211-1491911889:67978..68485 | Clytia hemisphaerica | exon |
| TCONS_00015416-exon-sc0000211-1510915933:67978..68485 | TCONS_00015416-exon-sc0000211-1510915933:67978..68485 | Clytia hemisphaerica | exon |
| TCONS_00015416-exon-sc0000211-1575043694:67978..68485 | TCONS_00015416-exon-sc0000211-1575043694:67978..68485 | Clytia hemisphaerica | exon |
| TCONS_00015416-exon-sc0000211-1491911889:68657..68720 | TCONS_00015416-exon-sc0000211-1491911889:68657..68720 | Clytia hemisphaerica | exon |
| TCONS_00015416-exon-sc0000211-1510915933:68657..68720 | TCONS_00015416-exon-sc0000211-1510915933:68657..68720 | Clytia hemisphaerica | exon |
| TCONS_00015416-exon-sc0000211-1575043694:68657..68720 | TCONS_00015416-exon-sc0000211-1575043694:68657..68720 | Clytia hemisphaerica | exon |
| TCONS_00015416-exon-sc0000211-1491911889:69261..69546 | TCONS_00015416-exon-sc0000211-1491911889:69261..69546 | Clytia hemisphaerica | exon |
| TCONS_00015416-exon-sc0000211-1510915933:69261..69546 | TCONS_00015416-exon-sc0000211-1510915933:69261..69546 | Clytia hemisphaerica | exon |
| TCONS_00015416-exon-sc0000211-1575043694:69261..69546 | TCONS_00015416-exon-sc0000211-1575043694:69261..69546 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000211 | supercontig | sc0000211:67978..69546 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005509 | calcium ion binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005509 |
calcium ion binding |
Blast
BLAST of TCONS_00015416 vs. Swiss-Prot (Human)
Match: MLRV (Myosin regulatory light chain 2, ventricular/cardiac muscle isoform OS=Homo sapiens GN=MYL2 PE=1 SV=3) HSP 1 Score: 107.071 bits (266), Expect = 9.472e-28 Identity = 60/158 (37.97%), Postives = 85/158 (53.80%), Query Frame = 3
Query: 300 KRRDRRRTTNVFAKLSQEKIQTYKEIFTMLDGDADSIISKKDLSTMFTSLGMTDMTEQKINEMIAESSGTLNFTAFLAMFAQMTCDMDSDETIRNAFLVLD-NGNGVCDAIEFQHLLVTYGNDRLSHDETQNIMRNIPVDVNGMMDVKQASKLFTFNE 770
K+R +NVF+ Q +IQ +KE FT++D + D I K DL F +LG ++ ++I+EMI E+ G +NFT FL MF + D +ETI NAF V D G GV A + +L T +R S +E + P DV G +D K + T E
Sbjct: 7 KKRAGGANSNVFSMFEQTQIQEFKEAFTIMDQNRDGFIDKNDLRDTFAALGRVNVKNEEIDEMIKEAPGPINFTVFLTMFGEKLKGADPEETILNAFKVFDPEGKGVLKADYVREMLTTQA-ERFSKEEVDQMFAAFPPDVTGNLDYKNLVHIITHGE 163
The following BLAST results are available for this feature:
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