|
Overview
Sequence
The following sequences are available for this feature:
polypeptide sequence >TCONS_00014969-protein ID=TCONS_00014969-protein|Name=TCONS_00014969-protein|organism=Clytia hemisphaerica|type=polypeptide|length=508bpRun BLAST on NCBI Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Annotated Terms
The following terms have been associated with this polypeptide:
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
Blast
BLAST of TCONS_00014969-protein vs. Swiss-Prot (Human)
Match: LRP4 (Low-density lipoprotein receptor-related protein 4 OS=Homo sapiens GN=LRP4 PE=1 SV=4) HSP 1 Score: 173.326 bits (438), Expect = 4.029e-46 Identity = 100/263 (38.02%), Postives = 155/263 (58.94%), Query Frame = 0
Query: 31 EEFIIFAKANETRFLDLDP--VTNPQPPYAPIDSEPFIVGVAFDYEDDVIFTSDLRLSEIVRMHPNGSNKEVIANGSRSD--GLAWDWVNERLYWTEYVTDTIRRYSPNNQSGEILVDQGLEKPLAIVLNPCNEYAMYWTDWGASPSIKKASMDGENVTVIISTDITYPNGLAIDIDEGRLYWADSSYDRIESSDLEGRDRLVILSS-IPHVFGLTLFKDDLYWTDWTERWVALANKNGQDPQVVLVDNLDQNPMAIKVFAKR 288
++F++FA+ + R + D +++ P A + S V + +D DD ++ +D+ I R +G+ +EV+ + S GLA DWV +LYWT+ TD I + + +L+ + L++P IV+ P Y MYWTDWGASP I++A MD VIIS+++T+PNGLAID RLYWAD+ IE + L+G R V++ S +PH FGLTL+ + +YWTDW + + A++ + L +NL +N M I VF +R
Sbjct: 741 DKFLLFARRMDIRRISFDTEDLSDDVIPLADVRS---AVALDWDSRDDHVYWTDVSTDTISRAKWDGTGQEVVVDTSLESPAGLAIDWVTNKLYWTDAGTDRIEVANTDGSMRTVLIWENLDRPRDIVVEPMGGY-MYWTDWGASPKIERAGMDASGRQVIISSNLTWPNGLAIDYGSQRLYWADAGMKTIEFAGLDGSKRKVLIGSQLPHPFGLTLYGERIYWTDWQTKSIQSADRLTGLDRETLQENL-ENLMDIHVFHRR 998 HSP 2 Score: 161.77 bits (408), Expect = 2.972e-42 Identity = 103/321 (32.09%), Postives = 168/321 (52.34%), Query Frame = 0
Query: 19 FSIGPPT---VKGNA-------EEFIIFAKANETRFLDLDPVTNPQPPYAPIDSEPFIVGVAFDYEDDVIFTSDLRLSEIVRMHPNGSNKE-VIANGSRS-DGLAWDWVNERLYWTEYVTDTIRRYSPNNQSGEILVDQGLEKPLAIVLNPCNEYAMYWTDWGASPSIKKASMDGENVTVIISTDITYPNGLAIDIDEGRLYWADSSYDRIESSDLEGRDRLVILSSIPHVFGLTLFKDDLYWTDWTERWVALANK-NGQDPQVVLVDNLDQNPMAIKVFAKRNGTCWSQWSVWSDCDRPCGVGFHKRSRMCYNTASDTEC 326
FS PT +KG+ E +++F+ R + LD ++ + P+ ++ + +D D ++ +D+ L I R NGSN E VI G ++ DGLA DWV LYWT+ +TI + ++L++ L++P AI + P Y ++WTDWG I++A++DG V+I+TD+ +PNGL +D D R+YW D+ DRIES+DL G+ R V++S + H F LT +YWTDW + + +K +G++ + VL + + + ++ GT CGV + +C+ ASD C
Sbjct: 1331 FSCACPTGIQLKGDGKTCDPSPETYLLFSSRGSIRRISLD-TSDHTDVHVPVPELNNVISLDYDSVDGKVYYTDVFLDVIRRADLNGSNMETVIGRGLKTTDGLAVDWVARNLYWTDTGRNTIEASRLDGSCRKVLINNSLDEPRAIAVFPRKGY-LFWTDWGHIAKIERANLDGSERKVLINTDLGWPNGLTLDYDTRRIYWVDAHLDRIESADLNGKLRQVLVSHVSHPFALTQQDRWIYWTDWQTKSIQRVDKYSGRNKETVLANVEGLMDIIVVSPQRQTGT------------NACGVNNGGCTHLCFARASDFVC 1637 HSP 3 Score: 161.384 bits (407), Expect = 4.002e-42 Identity = 88/222 (39.64%), Postives = 134/222 (60.36%), Query Frame = 0
Query: 67 VGVAFDYEDDVIFTSDLRLSEIVRMHPNGSN-KEVIANGSRS-DGLAWDWVNERLYWTEYVTDTIRRYSPNNQSGEILVDQGLEKPLAIVLNPCNEYAMYWTDWGASPSIKKASMDGENVTVIISTDITYPNGLAIDIDEGRLYWADSSYDRIESSDLEGRDRLVILS-SIPHVFGLTLFKDDLYWTDWTERWVALANKNGQDPQVVLVDNLDQNPMAIKVF 285
+ + F + +++F SD+ L I+R + NGSN +EV++ G S GLA DWV+++LYWT+ T I + + ++L+ Q LEKP AI L+P E +YWTDWG +P I+ +SMDG +I T + +PNGL ID R+YW D+ + IE ++L+G R ++S +PH F +T+F+D LYWTDW + + ANK Q ++ + L PM I
Sbjct: 471 IALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQNLEKPRAIALHP-MEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVFEDSLYWTDWHTKSINSANKFTGKNQEIIRNKL-HFPMDIHTL 690 HSP 4 Score: 146.747 bits (369), Expect = 2.490e-37 Identity = 92/287 (32.06%), Postives = 148/287 (51.57%), Query Frame = 0
Query: 25 TVKGNAEEFIIFAKANETRFLDLDPVTNPQPPY-----APID-SEPFIVGVAFDYEDDVIFTSDLRLSEIVRMHPNGSNKE-VIANG-SRSDGLAWDWVNERLYWTEYVTDTIRRYSPNNQSGEILVDQGLEKPLAIVLNPCNEYA-MYWTDWGASPSIKKASMDGENVTVIISTDITYPNGLAIDIDEGRLYWADSSYDRIESSDLEGRDRLVILSSIPHVFGLTLFKDDLYWTDWTERWVALANKNGQDPQVVLVDNLD----------QNPMAIKVFAKRNGTC 292
T F+IFA+ + R + LD PY PI+ + + + D ++ ++ SD L I R + +GS E +I G +DGLA D + ++YWT+ T+ I + + ++LV Q L+ P AIVL +E MYWTDWG + ++++ MDG + V+I+ ++ +PNGL +D +L WAD+ +RIE++DL G +R ++S + H +GLTL +YWTDW R + A+K +++ NL P+ RNG C
Sbjct: 1042 TCSPGMNSFLIFARRIDIRMVSLDI------PYFADVVVPINITMKNTIAIGVDPQEGKVYWSDSTLHRISRANLDGSQHEDIITTGLQTTDGLAVDAIGRKVYWTDTGTNRIEVGNLDGSMRKVLVWQNLDSPRAIVLY--HEMGFMYWTDWGENAKLERSGMDGSDRAVLINNNLGWPNGLTVDKASSQLLWADAHTERIEAADLNGANRHTLVSPVQHPYGLTLLDSYIYWTDWQTRSIHRADKGTGSNVILVRSNLPGLMDMQAVDRAQPLGFNKCGSRNGGC 1320 The following BLAST results are available for this feature:
BLAST of TCONS_00014969-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens)) Total hits: 1
|
