|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00014969 ID=TCONS_00014969|Name=TCONS_00014969|organism=Clytia hemisphaerica|type=transcript|length=1733bpRun BLAST on NCBI protein sequence of TCONS_00014969-protein >TCONS_00014969-protein ID=TCONS_00014969-protein|Name=TCONS_00014969-protein|organism=Clytia hemisphaerica|type=polypeptide|length=508bp MVRSIDLMMGYFAILLLIFSIGPPTVKGNAEEFIIFAKANETRFLDLDPVRun BLAST on NCBI transcript from alignment at sc0000201:293016..297989- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00014969 ID=TCONS_00014969|Name=TCONS_00014969|organism=Clytia hemisphaerica|type=transcript|length=4974bp|location=Sequence derived from alignment at sc0000201:293016..297989- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000201:293016..297989- >TCONS_00014969 ID=TCONS_00014969|Name=TCONS_00014969|organism=Clytia hemisphaerica|type=CDS|length=13743bp|location=Sequence derived from alignment at sc0000201:293016..297989- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00014969 vs. Swiss-Prot (Human)
Match: LRP4 (Low-density lipoprotein receptor-related protein 4 OS=Homo sapiens GN=LRP4 PE=1 SV=4) HSP 1 Score: 174.096 bits (440), Expect = 2.820e-45 Identity = 100/263 (38.02%), Postives = 155/263 (58.94%), Query Frame = 1
Query: 142 EEFIIFAKANETRFLDLDP--VTNPQPPYAPIDSEPFIVGVAFDYEDDVIFTSDLRLSEIVRMHPNGSNKEVIANGSRSD--GLAWDWVNERLYWTEYVTDTIRRYSPNNQSGEILVDQGLEKPLAIVLNPCNEYAMYWTDWGASPSIKKASMDGENVTVIISTDITYPNGLAIDIDEGRLYWADSSYDRIESSDLEGRDRLVILSS-IPHVFGLTLFKDDLYWTDWTERWVALANKNGQDPQVVLVDNLDQNPMAIKVFAKR 915
++F++FA+ + R + D +++ P A + S V + +D DD ++ +D+ I R +G+ +EV+ + S GLA DWV +LYWT+ TD I + + +L+ + L++P IV+ P Y MYWTDWGASP I++A MD VIIS+++T+PNGLAID RLYWAD+ IE + L+G R V++ S +PH FGLTL+ + +YWTDW + + A++ + L +NL +N M I VF +R
Sbjct: 741 DKFLLFARRMDIRRISFDTEDLSDDVIPLADVRS---AVALDWDSRDDHVYWTDVSTDTISRAKWDGTGQEVVVDTSLESPAGLAIDWVTNKLYWTDAGTDRIEVANTDGSMRTVLIWENLDRPRDIVVEPMGGY-MYWTDWGASPKIERAGMDASGRQVIISSNLTWPNGLAIDYGSQRLYWADAGMKTIEFAGLDGSKRKVLIGSQLPHPFGLTLYGERIYWTDWQTKSIQSADRLTGLDRETLQENL-ENLMDIHVFHRR 998 HSP 2 Score: 162.54 bits (410), Expect = 1.333e-41 Identity = 103/321 (32.09%), Postives = 168/321 (52.34%), Query Frame = 1
Query: 106 FSIGPPT---VKGNA-------EEFIIFAKANETRFLDLDPVTNPQPPYAPIDSEPFIVGVAFDYEDDVIFTSDLRLSEIVRMHPNGSNKE-VIANGSRS-DGLAWDWVNERLYWTEYVTDTIRRYSPNNQSGEILVDQGLEKPLAIVLNPCNEYAMYWTDWGASPSIKKASMDGENVTVIISTDITYPNGLAIDIDEGRLYWADSSYDRIESSDLEGRDRLVILSSIPHVFGLTLFKDDLYWTDWTERWVALANK-NGQDPQVVLVDNLDQNPMAIKVFAKRNGTCWSQWSVWSDCDRPCGVGFHKRSRMCYNTASDTEC 1029
FS PT +KG+ E +++F+ R + LD ++ + P+ ++ + +D D ++ +D+ L I R NGSN E VI G ++ DGLA DWV LYWT+ +TI + ++L++ L++P AI + P Y ++WTDWG I++A++DG V+I+TD+ +PNGL +D D R+YW D+ DRIES+DL G+ R V++S + H F LT +YWTDW + + +K +G++ + VL + + + ++ GT CGV + +C+ ASD C
Sbjct: 1331 FSCACPTGIQLKGDGKTCDPSPETYLLFSSRGSIRRISLD-TSDHTDVHVPVPELNNVISLDYDSVDGKVYYTDVFLDVIRRADLNGSNMETVIGRGLKTTDGLAVDWVARNLYWTDTGRNTIEASRLDGSCRKVLINNSLDEPRAIAVFPRKGY-LFWTDWGHIAKIERANLDGSERKVLINTDLGWPNGLTLDYDTRRIYWVDAHLDRIESADLNGKLRQVLVSHVSHPFALTQQDRWIYWTDWQTKSIQRVDKYSGRNKETVLANVEGLMDIIVVSPQRQTGT------------NACGVNNGGCTHLCFARASDFVC 1637 HSP 3 Score: 162.155 bits (409), Expect = 2.086e-41 Identity = 88/222 (39.64%), Postives = 134/222 (60.36%), Query Frame = 1
Query: 250 VGVAFDYEDDVIFTSDLRLSEIVRMHPNGSN-KEVIANGSRS-DGLAWDWVNERLYWTEYVTDTIRRYSPNNQSGEILVDQGLEKPLAIVLNPCNEYAMYWTDWGASPSIKKASMDGENVTVIISTDITYPNGLAIDIDEGRLYWADSSYDRIESSDLEGRDRLVILS-SIPHVFGLTLFKDDLYWTDWTERWVALANKNGQDPQVVLVDNLDQNPMAIKVF 906
+ + F + +++F SD+ L I+R + NGSN +EV++ G S GLA DWV+++LYWT+ T I + + ++L+ Q LEKP AI L+P E +YWTDWG +P I+ +SMDG +I T + +PNGL ID R+YW D+ + IE ++L+G R ++S +PH F +T+F+D LYWTDW + + ANK Q ++ + L PM I
Sbjct: 471 IALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQNLEKPRAIALHP-MEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVFEDSLYWTDWHTKSINSANKFTGKNQEIIRNKL-HFPMDIHTL 690 HSP 4 Score: 147.517 bits (371), Expect = 8.472e-37 Identity = 91/286 (31.82%), Postives = 147/286 (51.40%), Query Frame = 1
Query: 124 TVKGNAEEFIIFAKANETRFLDLDPVTNPQPPY-----APID-SEPFIVGVAFDYEDDVIFTSDLRLSEIVRMHPNGSNKE-VIANG-SRSDGLAWDWVNERLYWTEYVTDTIRRYSPNNQSGEILVDQGLEKPLAIVLNPCNEYAMYWTDWGASPSIKKASMDGENVTVIISTDITYPNGLAIDIDEGRLYWADSSYDRIESSDLEGRDRLVILSSIPHVFGLTLFKDDLYWTDWTERWVALANKNGQDPQVVLVDNL----------DQNPMAIKVFAKRNGTC 927
T F+IFA+ + R + LD PY PI+ + + + D ++ ++ SD L I R + +GS E +I G +DGLA D + ++YWT+ T+ I + + ++LV Q L+ P AIVL + MYWTDWG + ++++ MDG + V+I+ ++ +PNGL +D +L WAD+ +RIE++DL G +R ++S + H +GLTL +YWTDW R + A+K +++ NL P+ RNG C
Sbjct: 1042 TCSPGMNSFLIFARRIDIRMVSLDI------PYFADVVVPINITMKNTIAIGVDPQEGKVYWSDSTLHRISRANLDGSQHEDIITTGLQTTDGLAVDAIGRKVYWTDTGTNRIEVGNLDGSMRKVLVWQNLDSPRAIVLYHEMGF-MYWTDWGENAKLERSGMDGSDRAVLINNNLGWPNGLTVDKASSQLLWADAHTERIEAADLNGANRHTLVSPVQHPYGLTLLDSYIYWTDWQTRSIHRADKGTGSNVILVRSNLPGLMDMQAVDRAQPLGFNKCGSRNGGC 1320 The following BLAST results are available for this feature:
BLAST of TCONS_00014969 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2026, MARIMBA.