TCONS_00013959-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00013959-protein
Unique NameTCONS_00013959-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length216

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00013959-protein ID=TCONS_00013959-protein|Name=TCONS_00013959-protein|organism=Clytia hemisphaerica|type=polypeptide|length=216bp
MLLLILSSEISGSYDVNHAVKRAKTDLSFDHPVVATLREYEEKVKLKKLR
KSYNLNEEDEVEVEEEEEKKSSNETIDMEDNDKSSDFIGPLHRPINERVQ
PTPEQLIYKNRLELNQLLEIEKFKSYKAGKPTKVLYIKNLAKQTTSEDLA
CLFSRFFVQNQSSVEYKLLQQGRMRGQAFVTFSDLECAVRALNLCNGYML
HGKPMVIQYGRPRSEG
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_007810XLOC_007810Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00013959TCONS_00013959Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 46..74
NoneNo IPR availableGENE3D3.30.70.330coord: 36..216
e-value: 4.2E-21
score: 74.8
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 57..83
NoneNo IPR availableCDDcd12239RRM2_RBM40_likecoord: 132..210
e-value: 4.18059E-36
score: 122.672
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 134..208
e-value: 9.0E-14
score: 61.8
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 135..205
e-value: 3.2E-11
score: 42.8
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 133..212
score: 13.925
IPR000504RNA recognition motif domainSUPERFAMILY54928RNA-binding domain, RBDcoord: 103..214

Blast
[Close]
BLAST of TCONS_00013959-protein vs. Swiss-Prot (Human)
Match: RBM41 (RNA-binding protein 41 OS=Homo sapiens GN=RBM41 PE=1 SV=2)

HSP 1 Score: 110.923 bits (276), Expect = 1.116e-28
Identity = 53/125 (42.40%), Postives = 83/125 (66.40%), Query Frame = 0 
Query:   87 FIGPLHRPINERVQPTPEQLIYKNRLELNQLLEIEKFKSYKAGKPTKVLYIKNLAKQTTSEDLACLFSRFFVQNQSSVEYKLLQQGRMRGQAFVTFSDLECAVRALNLCNGYMLHGKPMVIQYGR 211
            + GP  + + + ++  PE  I +NRL   ++ +I  F SY  G+P KVLY+KNL+ + T  DL  LF+RF  +    ++++++  GRMRGQAF+TF + E A +AL+L NGY LHGK +VI++G+
Sbjct:  265 WTGP--KKLTQPIEFVPEDEIQRNRLSEEEIRKIPMFSSYNPGEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMM-TGRMRGQAFITFPNKEIAWQALHLVNGYKLHGKILVIEFGK 386
The following BLAST results are available for this feature:
BLAST of TCONS_00013959-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RBM411.116e-2842.40RNA-binding protein 41 OS=Homo sapiens GN=RBM41 PE... [more]
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