TCONS_00013959 (transcript) - C. hemisphaerica

Overview
NameTCONS_00013959
Unique NameTCONS_00013959
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1682

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00013959 ID=TCONS_00013959|Name=TCONS_00013959|organism=Clytia hemisphaerica|type=transcript|length=1682bp
CaaattcactttcgttttcagtgtgtgtgctaaaaaaaagaatgatatGG
ATGAGAAACTATTTTCAAGAAAGCATGTTTCAAAGAATAATTCAACTGTA
CGATCTGGTACAAAGACACTAAATGAATACCATATAATTGAAAAAGAAGA
GAACAGAGCCTCAAAACTACGTGAAAAAGGACTAACTGATTCAGAGATTA
GATTGAAGTTAAAGCTTGATGATGGAATTCTTAAGGAGGATGATCTCACA
TTCCTTGAAAAAGGAAAACTAATTGAAATCAAGCGTAAATTAACGGAGTA
TCAACGAAGTTTAGAAGAACCAATTCGATTCTCTGATGTTGTTGTTAATT
TTGTCTTCAGAAATTTCTGGATCGTATGATGTCAACCATGCAGTCAAAAG
AGCAAAAACTGatcTTTCTTTTGACCATCCAGTCGTTGCAACGTTACGTG
AATATGAAGAAAAAGTTAAGCTCAAGAAATTAAGAAAGTCTTACAATCTG
AACGAAGAAGATGAAGTTGAAGTTGAAGAAGAGGAAGAGAAAAAATCATC
TAACGAGACTATAGACATGGAAGACAACGACAAATCAAGCGATTTCATTG
GTCCATTACACCGACCAATCAACGAGCGTGTCCAACCCACGCCTGAACAA
CTAATATATAAGAATCGTTTAGAGCTAAACCAACTGTTGGAGATTGAGAA
ATTCAAATCATACAAAGCTGGTAAACCCACAAAAGTACTATACATCAAGA
ATCTTGCCAAGCAAACGACATCCGAAGATTTGGCTTgtttattttcaaga
tttttcgtTCAGAATCAATCAAGCGTGGAGTATAAGTTACTTCAACAAGG
TCGTATGAGAGGACAAGCCTTTGTGACATTTTCTGATCTTGAATGCGCTG
TCCGCGCTTTAAATCTTTGTAATGGCTACATGCTTCATGGAAAACCCATG
GTTATTCAATATGGCCGACCTAGAAGTGAGggttgaatttcaaatttttt
taatgggTTGTCTTGGTGTCCTGTCCTGACCAAACCAAAGGTTATCTAGT
GATTAGCGTTTCCTCGGTGGAAAGTCCGAGGTCATCCCCAGCTGACACTT
AACgtttttttcaacgtttatctaatgtacacaacaacgtccatataacg
ttagatgaatgtttaaacaacgttgtgtcCAAGCTGGGTCCAGATAAGTG
ACGGTTAAACTTTGATGTTATAACCGATTGTAGACTCTCCTAccagagtc
gatattttacatGGATAGCctagtaatctaggacttttagacagtatttc
gattgttttcacggggtccacgacCAGCTATCTATAAACTGagcggaaca
ttggaaggagcggggattcgaaggTTGGAAACCAGAGGATGTCTAAAATG
GTAGACGAGAGGTGaattaaaacttttaatttatTAATTGATTATGGATG
CTAGCCTGGAGGCTCAATATGAGTTCTTGATGAATTGGATGGCACTGATG
AGTAGCCTGGTGTATAATGACTTCATTTTTGACTTTGCCATAGAACGCAG
CAAAACATCTACAtctacaatcggcgccgaaatattgtggacaaaaaggg
gaattccctcaaaactttaaagccgcaagtgatttttaagtgctttgaag
tacagttggaaagttttaacattagatttgac
Run BLAST on NCBI

protein sequence of TCONS_00013959-protein

>TCONS_00013959-protein ID=TCONS_00013959-protein|Name=TCONS_00013959-protein|organism=Clytia hemisphaerica|type=polypeptide|length=216bp
MLLLILSSEISGSYDVNHAVKRAKTDLSFDHPVVATLREYEEKVKLKKLR
KSYNLNEEDEVEVEEEEEKKSSNETIDMEDNDKSSDFIGPLHRPINERVQ
PTPEQLIYKNRLELNQLLEIEKFKSYKAGKPTKVLYIKNLAKQTTSEDLA
CLFSRFFVQNQSSVEYKLLQQGRMRGQAFVTFSDLECAVRALNLCNGYML
HGKPMVIQYGRPRSEG
Run BLAST on NCBI

transcript from alignment at sc0000175:279273..292588+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00013959 ID=TCONS_00013959|Name=TCONS_00013959|organism=Clytia hemisphaerica|type=transcript|length=13316bp|location=Sequence derived from alignment at sc0000175:279273..292588+ (Clytia hemisphaerica)
CaaattcactttcgttttcagtgtgtgtgctaaaaaaaagaatgatatGG
ATGAGAAACTATTTTCAAGAAAGCATGTTTCAAAGAATAATTCAACTGTA
CGATCTGGTACAAAGACACTAAATGAATACCATATAATTGAAAAAGAAGA
GAACAGAGCCTCAAAACTACGTGAAAAAGGACTAACTGATTCAGAGATTA
GATTGAAGTTAAAGCTTGATGATGGAATTCTTAAGGAGGTAGGTTGTCAA
GGTTGTACCATTCATGTAATTTCTTTTACTTACTTATCTTATATACATTG
ATACTGTCAGTTTTCTCTCAGTCAGATTGTATTACTTAAAATAAGTTTAT
CTAGCAGTCTAGTGTTGGTTACCTCATATTTCCTAGAACGCAACATTCTA
GGTctatcaaataaacaaattacTGCAACCAGGACCACCCAGGACCCCAG
AGGCTAGCACGCTCAGATGTCGCCAAATTTTTCCAGGCGTTTTTccagac
aaaaataaacagtCCAGTTCACTgtgtaattttgaattttagtatCGTAA
CTTggtctcgggtaacttaatgcatgtcccagaattgcattaatttttcc
gcccaagttccagtccctaaaccataataaactatacatttttggaagca
tatttggatgtagaataccgtattgggtgtaactttaatttttttctcag
cagaatttgagtttttttaagaaaacgtgattatgaGGTCATTATttatt
ctgggacatgcattaagttacccgaggtccaggcttcggcataagaaaaa
agaaggcgtgtgatcatcgcacgcctacgtagtaatttttagtaatttag
gcgtgCGAATTATGGCACGCCTCATTTTCTTTAGACGTGCAATCGCGTGC
gatcgtttttttcttttattttataaacatcATTAATAATGATGAGGCTG
AAACTTTTGAACAATTCCTAAGAATGATCTTTCTTTTATCTACATAAAAC
TAGACAACAGGAAAGAAGAAAGTGTATATTCAATCTtcatatttgaaaaa
caaaaacagaaaccaAAAGAGCACTGAATAATCACGAAGGAGAATACTTT
ACTTTAGGAAAACAAATGAGAAGAAGAATCATGCAGCAAAAGTAACTTTT
AAGAAGAGCTAGTTTATTGTCATAAACCAACGACCTCANNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNtggagaaagaggaaaaactcgataacccaa
atttatctggtcgccggtcgtggtcgctggtcgtggtcgccatttctggt
cgatgtttagaaactccctgcGAGAGGGaaggaaaaagatttgagagagg
aaaaatcatacagcaaaagtcattttttaaaaaggttttagagAGACGAA
AAATTGTGcagcaaaaattatttttgagaaaggcTTGTTTATTGAAGACC
AAAGCATAGTATGAGAGAAAGAGGAGAGAGAAGATGTGTATCCAttagag
taacttttttataagaaattttgtaTACATAATTATAGCAGTTTGAAAGA
GTAAAGGAAAGTTTATCTTTCATCTATTTGGTTCTTATGATTAAAGTAGA
AAAtgatatttgattttctttcaacaagcagaaaaaatatttctagaatA
AATTTTTGCATGTGCGATTGATCGCACGCCTCGCTAGGTTTTCATGATTT
ATGGCGTGTGATAAATTGCACGCCTAAAAGGCTTTTAGGCGTGTGCGGAG
GCGTGCGCGTGCGATCGCACGCCTAATATGCCGAAGCCTGgaggtctaat
gtcaacatccttcatctaattctgacacccatTAGAgctgaaaacaataa
aaatgccgaaactatttttctttgcttggtGGTCAGAAgaaaaatccttt
ttcaatcagtgattccaactttcatattattcagTTATTCTTATCACTAt
aaaagaagggtgtcgaaattagaaaagggatgttgacattaaaAACCAAC
TTACTTTATGGTATATTATGCTCTTTGTTTTAGGATGATCTCACATTCCT
TGAAAAAGGAAAACTAATTGAAATCAAGCGTAAATTAACGGAGTATCAAC
GAAGTTTAGAAGAACCAATTCGATTCTCTGATGTTGTTGTTAATTTTGTC
TTCAGAAATTTCTGGATCGTATGATGTCAACCATGCAGTCAAAAGAGCAA
AAACTGGTTTGTAATTCATACAGTGGACACTACCTATTTCTAACTTtcat
tatttgaatttttcttttatttgaactATAAAAACATTGATCCCCTCAGG
TAAAGAGTAGCGTAAAATgctctccataattcgaatctttctttagaTAG
AAGAAAGCATTTTGTCCTTTGAAGGTCTAATTAAAGAGAGGCAACATATC
GTTTTTAACCTTTTTAGCGCAACATTTTTCATCATGAAAATGCTCAACTT
GCAACTTCAAACTTACATGAAATCTTGTAACTTGAGAAATAGacgataca
cgctttttttttaataagaatacactttataagaatgtccatgatgaaaa
tggccaaaaaactaagaatatgctatgaatatcaccatcatggaattttg
ctactgaagctaagaatgccattttaagagcatttccaattataaattat
aaattatccccaagttaggctcactccttttacaaaagtgcgattttatg
cttgagacGTATGAACTAAatgttaaatctagtatgaattaggatcctaa
cctaagaatgtgctataagaatattttaggatgattttcccaaaaaggtt
aagaatatccatgatgaaatgttACCGTCAaatgctctaacttgggacga
ttggtcgaaacatgggactgttgcatatcttgtttgtattttcacttact
gtaaaatcgaaagagaaatcgtgtatttttaaatacgccgttccttaact
caaatcaaatgactttggaggctCGGTGAAATGCtagccaaattgccgtc
ccatgttttgtcagatagtcccatgttagagcagttgacggtatactttt
taaaaatgtacCCTGCTTATATATAcccttttaaatcaagtggctCTTAA
TTATAGGATATGGTATATTGGCCAATTTTGAAGGTACATACACGTCACTT
TGGTTTAAgagttaaatgaaaaaaataaagttctctaaaaaatgcaattt
cttaggaaattagTCCATAatactgaaaataagaacattttaagaacatt
ttaagaacattttaggcttaaaacctaAACTTCCAaagccttaaccctat
tcaacctaggcttttaggggcggttcagaactagggggggggggcttttc
ctgcaCCACCCCTTaatttttgatctagtgggtctttttggatgaaattt
ggcacacaagacccttgtcacgtaaggtaacttttgacaaaaaagttttt
tgatgacgtcactcatcatgcccaaagtgagcaaaaaccgaaaattgcct
ttgttcttataaatagctattgtattctaacaaaagctttagcaaaaagt
tgcctgagtttaaaatgcttattttatcctaaatattcaataaattacgg
tttaaaggatatatttgacattaagaatcaatttgtattggaaaagtgtc
aatttttttgacaccttactgtcagaaatgtcatcatgctcaaggtgtga
aaattttNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNcggcaaaagctctattatttcaggagctattaccaatag
tttgacctccgaacagaaagagcccccccccctagttcgaatagggttaa
aaagtttttgagacGATtagtttttaatgctttatttcctcattcatcaa
atttttgaattacaagctttttgacAGGAAAAACAGTGTCCGGAAAAAGA
CGAATGAAACAGATTGTTAAGTAAAATATTCAAACctcattattttaaaa
tattgagATTAGATCTTGGATTTGggcctgttttactttattttgttagt
gaattgatttgaagttttaccgcTGGGTAcctttccatcattcagtcagg
tccgcgcaggaGACTCTAAGTTATTCAACGAgctataaacgagcttctaa
ctcctttcTATAAAGTTTGaacgattttcttaaaaaacttagaaaaaaga
aCCGTGACACTTAAAGGGCTAACCTTGATTTCCAGGAAAATTTGTCTTTG
GTACCACCACCCCCTTTTACCTGGTGAGAAAAAAGGAACCTGTATCCCTA
TTTTCAATCTGGTTACCAAGATATGGACAAAATATGGATACTTCACCTGG
GAAAATGCCTTTTAATAACTAGCACTAGCAGCCAAATCCACCTCCCCAAA
ATGTAGAGAGCTAAAAGTCTGGAAAGTTTTCTGtgacatttcgatttttt
gaattaGAAAATctagaattcaaaaaatatatttctgaAAAGTAATCTGa
ttatttttcaagaattttttacaGATAATTAGGaatttttgttctgattt
tccgaAATTTGAAAATCCTTACCATTTTTACCCACCAATAACCATCAGAA
CAGAAATTCAAAACCAGGTACTAACTTGAAGTAAGTGATAGACACCCCAA
ATATAGTACCAGGCAATACTATTTTGATGGTTATTCaaaattagacacca
ccacctggcTATGGGTCAGTATCCTGCAGCTATGCCCTCCTGTATAGAAA
TCAATATACAAGGTTTGAGAATGTTTATTGATGATGTTTTCTGGACACAT
AAaatattgttaaccggttactttttcgaagccggctacacggctttttg
cgcaatgcaattggttcttttcgtaTGACGACGGGCCTATACACTGCAAA
GTTGTgtaagctcggtcgttacttgacagcaggcaatatttctcagaaaa
gccctcactaaccggtcattattgtcaGTCCAGTAGTGTGGTGGGGCGAC
AAAAAATCGGGCAAGCTGGGGAggcaatttgagaaaattttgattttggc
gccccctgctaaaaaataaataagtttgCAAAAATAACGCGAGCAAAGCA
AGCACGaaaatttttgggtttttacTCTCTTTATGTAGAAAACTGCCAAT
TAAGGTGCAAAAAAGCAAAAGGGCGNTGACTAGTTTTAaaataacgcgag
cgaagcaagCACGAAAATCAtggggtattttctctctttttggccgaaaa
ctgccatatctaagcgtgtaaaagagcaaaggcgccaaaattagtaatca
gaggcgTATTTTTTCGCCCTTTGTATTTCAGGACCCCCACCCCCCCTACC
ACCACGCTACTGATTATTGTATTAGTGTAGACTAAagtcattttgttttc
ttttcagatcTTTCTTTTGACCATCCAGTCGTTGCAACGTTACGTGAATA
TGAAGAAAAAGTTAAGCTCAAGAAATTAAGAAAGTCTTACAATCTGAACG
AAGAAGATGAAGTTGAAGTTGAAGAAGGTATCTCATTAATCTTTCTAGAG
CAGagcgcaacattttttcaaagatgtgaaaatttgaaattcaaaatttc
aaactagGATAAAAGGGCCATAAAAGCTTGTAGATTGAGagtttaagggc
tctgatcaTAGTCAGAAAGTTTATTAAgggatttgaagataaaactgttg
ttttggtttttttgacACTTAATAAAAAACTGCCTTTACAAGTTGTTTGG
TTATTCATCCTGTCAAGAGTAATTACTAGTAAGAATTTAGTTACaataat
gacgttatgaactttaaaaagacgctgataaaatgttatattaccttctt
catcaaaaagtgctaagttttaatgggcaattaacctttttgttagATTA
Accattttcaagatttcgagacaaagaagcttttacaaaaattttccgaa
aatctctttttagtttggttaaagatgaaatgttttttcttcgttgaaaa
taaggtcctcaaagGTTGAAAAACTCTTCTtcacaaaagtcttcattttt
ttcttcatcaaattttttcattatgatttttaaatcttcagattcaggaa
tagttggtccaacagaaaatgtataacatgccatagttttgttgctTACA
TCAGGCAGAAAACTATATTTtaatcagggttgctttagcttgaaaattat
gatttttgggtcgctcggacatgaagctatttgggccggacaatgtccga
tgtccgaccgttatttcgagccctgggcaaatataaaaaaaacactatGG
TCAGAGAGCCCTTAAcaatggttttggtaccatcggaaagatattttaat
actctttctaaaaatatGCGGTTTATGGCCATTGGCCAGTCTTTCTAAAA
ATATGCGGTTTATGGCCATTTAAATCAAGTGGTTAGGAGTTATAGCCTTA
AGTCTGGGACTTGCTATATTGGCAAAATTAAACCGTGTATACCGTGATTT
TTAAAGGATATAGTTTCTACCTCAAATAGTCCacacaatttgaaattaaa
atttgactttAACCTTGAAAAGACCTACGTTAAGTACGACTTGAGtagaa
aaagaaagatattttatgaaacaagaaaaaaaaaagaattttcgtatctc
tttttccaaatctctagTCTGACAAAAACTTTACGCTATctatttttaat
taaaatatcGAGTACCTTAtacattttcgaaattttgtgGTAGATTTTAC
TATCTAACACATACAATAGAagtgcaaaatttgtgtaggtgAGCAGATTT
CTTATGACacggtaattatctttttatatctaGCGACTCTCCTGTCTATA
CTACTATATTGTCCTTTTGCATAAGACTCAACTTCCTGTACTAGAATTTC
ACTGGCTTTTCCGGGACTTTTCCGCTTTTTTTCCGGTATATccggcatga
gattggaaagatttttttctcaatgtatatatggaaaatcttttttactt
ACAAAATTGCCGAACTTTCCAAAGCTCATTTTTTCACTACCCGGAGTCCC
GGACTTGGAAAGTGTCAGAGGAATCTTATTGAGGAAAGAGGAATCTTATg
caaacccagctggcacacaacgtcgtttcaacgtttatctaacgtctaca
acgtctatataacgttagatgaacgttgaaacaacgttgtgtgccagatg
GGTAAACGACGGTAGTAGCAAATGGAAATTTTCCATTAAAAACGCATGCA
CTGCGTGGTTTTGAAACGCCGGTTTGATGTGCCGTAAAAAAATGTACagc
aagatttcgaaaaaagtaCACCACAGAAAAAAGAAAGTCGTCCCAAATGC
GCTGCAAACCTGAAAGTTTTCACTTTTCCTTGTTTTAGAAAGGTGGaaga
tttctctttaaaaactctttttgtttaaccctttgaatttttttcatttg
aacaGAGGAAGAGAAAAAATCATCTAACGAGACTATAGACATGGAAGACA
ACGACAAATCAAGCGATTTCATTGGTCCATTACACCGACCAATCAACGAG
CGTGTCCAACCCACGCCTGAACAACTAATATATAAGAATCGTTTAGAGCT
AAACCAACTGTTGGAGATTGAGAAATTCAAATCATACAAAGCTGGTAATT
TTGTGGATAGGCCcaaacgcgaaatttaatcccctcgAAAGTTTATTCCG
TTAAATTACACACTCTTATTGAAACCCTGTTTTCCAAATGGTACATTAAT
GGTCGAAGGCTACATATGGTTGAAAGCAGAGAATGCCTAGAATGGTAGAT
GAGAAGTACTAGAATTTCACTGGCTTTTCCGGGACTTTTCCGCTTTTTTT
CCGGTATATccggcatgagattggaaagatttttttctcaatgtatatat
ggaaaatcttttttacttACAAAATTGCCGAACTTTCCAAAGCTCATTTT
TTCACTACCCGGAGTCCCGGACTTGGAAAGTGTCAGAGGAATCTTATTGA
GGAAAGAGGAATCTTATgcaaacccagctggcacacaacgtcgtttcaac
gtttatctaacgtctacaacgtctatataacgttagatgaacgttgaaac
aacgttgtgtgccagatgGGTAAACGACGGTAGTAGCAAATGGAAATTTT
CCATTAAAAACGCATGCACTGCGTGGTTTTGAAACGCCGGTTTGATGTGC
CGTAAAAAAATGTACagcaagatttcgaaaaaagtaCACCACAGAAAAAA
GAAAGTCGTCCCAAATGCGCTGCAAACCTGAAAGTTTTCACTTTTCCTTG
TTTTAGAAAGGTGGaagatttctctttaaaaactctttttgtttaaccct
ttgaatttttttcatttgaacaGAGGAAGAGAAAAAATCATCTAACGAGA
CTATAGACATGGAAGACAACGACAAATCAAGCGATTTCATTGGTCCATTA
CACCGACCAATCAACGAGCGTGTCCAACCCACGCCTGAACAACTAATATA
TAAGAATCGTTTAGAGCTAAACCAACTGTTGGAGATTGAGAAATTCAAAT
CATACAAAGCTGGTAAACCCACAAAAGTAAGCGTCTTGcacgtttctttt
ataagaacatccaaaatctttgaagcctcgggatgctcttaactttttga
gttctaagcctaaaaattttcctaacatattcttattttcccaAACTTGT
GGGTATTTTCGAGggtatttttgtttggttttctaAGAAATCAGATGTTT
TAGAGTCTCCAAAGCGCTAAGGTGttctttacttgttcttaacagTTTGG
CCATCAATGcgttttgttcttatatagtttgttcttataaaaaaacgtgt
atatataCGTGTAGATATTGTAAACATGGATTCCGTTTCTAGTACCGAGA
AAAACCTCAAACTATTTTTGTTTGTTAcatatttttgacttttataaGTA
AAGAACCAATATTGCATATCAGCGTAAAATCAGTAAAAGAACTCATTTTA
GAATTTTAGTTTGGAAAAAAGACAAATATACTTGGAGGTTTTACTCAGAA
CCACGGAAAGTTTCTACGGGAAAATATCTCAAactatctgattatccctt
taagtgtCTCTCTTtagggggtttcagggggtacccgattctgCAATTCC
GCCAAATCTTTCTCCATTATCCATCAAATCGTTTCAAAAAGGACTAAAAT
TGCGacactggaaaatttctttgatattcaagatttttttcaaagattcc
gcgatttgaaaatttgaaattccgTCCAAAACTTTGCTCCTCCGTccaaa
aaagggccgattccacTCCTCCACCaaccatgaaccccccccctatTAAA
CGATTTGGATGTGATTACCTTGAAGGTTTAATCTTATATAAGTGTCCCCT
TTCGATGGCGATGAAATAATGTCTCTTAAGTACCTCTAGGTgtttacaat
catggacaaaaggttgtagacaaatgaaatttcagtgaaaaatgatgaga
aatagagcaaaatgactcttcaatgtgtctgaaaggggagggaagctaag
aaaaacacttttgaagtcgttgcattgcttttgaattgtttttgagggga
ccacaagcaaaaaataagcgttttgatactggtgtaagccagttagtAAA
GCCTTTGTGGTAAGCCTTTGTGGTTAGACtccagtgggtgactttcaaag
actttgaacagctttcgATGGGtttggatgggtttggaaagcacccagaa
cctcttgggagcttgtttttgatcgatattgaagtattttgcaaatattg
cagaagtctacaaaccttttgtccatgattgtatgtGAAAATTacccttt
taaacttttttctctaTCAATAACACcattctcaaataaaaaatgtgtat
gaatttttttccttctatAGGTACTATACATCAAGAATCTTGCCAAGCAA
ACGACATCCGAAGATTTGGCTTgtttattttcaagatttttcgtTCAGAA
TCAATCAAGCGTGGAGTATAAGTTACTTCAACAAGGTCGTATGAGAGGAC
AAGCCTTTGTGACATTTTCTGGTAAGTTTGAGATGCATTAGGGTTGATAA
ATGCTCATTTTGAAATCAGGATTCGATAGACCCTTTCATAAATTatgtta
cgaacatcacttgcctcgttttgaaattattaccatggtgattaactccc
agcggattttattaaaactactttctattcataaaaaaaaaacattttat
gtctcaagggacataatcaccatgcatggtaattgtttgaatacgaggca
agtgatgttcgtgacgtaatttatgaaaaggtctattctcatCCAGTGTT
GAGATTTACTTAGCGAATGAATGTACCTTCACCCTAGTCATCCCATTCCA
GCTTTGACTTCCATGTAGGgtgccggggttcgattcccactcagtCCTGA
GATTCATTTGTCAAGTAAATGTGCATTTGCTATGATTGAGTGGTAAAAAG
AGTGCTATAATTTATGCTTTAATttagcataaattatgcagattgtgggg
aatttccctgttttcaatcaatttttgaccaccagaaagaaaagttgaga
ctttgatataatacattttttgctcattttgaAGAGCTttatcacgtggt
ataggtcttttttgaatttgaagaccccccccccccccccaaaaaaatct
ttttttttttttttgtaaaaattcgaaaaccaaaaaattttttttttttt
ttgaaaatgtttatctcgtggttaaggcttttttttaatttgaagccccc
cccccctcccccaaaaaaaaatcatgaatttttagGGCTTACAGTTTTga
caaaaaacgcaaaaaatcgcaaattacgcaaaaactgcaggttttcaagc
ttggtaacattcaaattcggaatcagcaccctcaagtTGACTAAAATTAA
TGGTCAAAGCTTGTTCACCGCGGCATTGAAACTTTAGCAATCCGCTGGCC
ATGGTCTACCATGGTATATCACCAGTACGTAGCTCTTTGTGTCGTGATCA
CCAGTAACCGGATGTAGTAACAGTGTACATTTAGTCTTATGCAATAGTTC
GGTTGCTTGACCGATCTTAATTAAGTCATTTATTGTGGATGAGCGTTATA
ATATGAGAGACTCCTGCACAAAGTTAACAGCTAGAAGTGTGATATATTTT
TAATGATTCTTGTTTTGTTTCAAAACTGTGCTTTTTGTGTTACGGAGGTA
TGGATAGAAAACGGATTAAAATTGCTANTCTCGTAAAGAATTCTTGTTTT
TCGCTACAAATTTGTGCTTCTTGCGGTGTGAAAGAATGGAGgtaaaaaaa
ttgctttttttcttGACAGATCTTGAATGCGCTGTCCGCGCTTTAAATCT
TTGTAATGGCTACATGCTTCATGGAAAACCCATGGTTATTCAATATGGCC
GACCTAGAAGTGAGggttgaatttcaaatttttttaatgggTTGTCTTGG
TGTCCTGTCCTGACCAAACCAAAGGTTATCTAGTGATTAGCGTTTCCTCG
GTGGAAAGTCCGAGGTCATCCCCAGCTGACACTTAACgtttttttcaacg
tttatctaatgtacacaacaacgtccatataacgttagatgaatgtttaa
acaacgttgtgtcCAAGCTGGGTCCAGATAAGTGACGGTTAAACTTTGAT
GTTATAACCGATTGTAGACTCTCCTAccagagtcgatattttacatGGAT
AGCctagtaatctaggacttttagacagtatttcgattgttttcacgggg
tccacgacCAGCTATCTATAAACTGagcggaacattggaaggagcgggga
ttcgaaggTTGGAAACCAGAGGATGTCTAAAATGGTAGACGAGAGGTGaa
ttaaaacttttaatttatTAATTGATTATGGATGCTAGCCTGGAGGCTCA
ATATGAGTTCTTGATGAATTGGATGGCACTGATGAGTAGCCTGGTGTATA
ATGACTTCATTTTTGACTTTGCCATAGAACGCAGCAAAACATCTACAtct
acaatcggcgccgaaatattgtggacaaaaaggggaattccctcaaaact
ttaaagccgcaagtgatttttaagtgctttgaagtacagttggaaagttt
taacattagatttgac

Coding sequence (CDS) from alignment at sc0000175:279273..292588+

>TCONS_00013959 ID=TCONS_00013959|Name=TCONS_00013959|organism=Clytia hemisphaerica|type=CDS|length=3906bp|location=Sequence derived from alignment at sc0000175:279273..292588+ (Clytia hemisphaerica)
ATGTTGTTGTTAATTTTGTCTTCAGAAATTTCTGGATCGTATGATGTCAA
CCATGCAGTCAAAAGAGCAAAAACTGatcTTTCTTTTGACCATCCAGTCG
TTGCAACGTTACGTGAATATGAAGAAAAAGTTAAGCTCAAGAAATTAAGA
AAGTCTTACAATCTGAACGAAGAAGATGAAGTTGAAGTTGAAGAAGAGGA
AGAGAAAAAATCATCTAACGAGACTATAGACATGGAAGACAACGACAAAT
CAAGCGATTTCATTGGTCCATTACACCGACCAATCAACGAGCGTGTCCAA
CCCACGCCTGAACAACTAATATATAAGAATCGTTTAGAGCTAAACCAACT
GTTGGAGATTGAGAAATTCAAATCATACAAAGCTGGTAAACCCACAAAAG
TACTATACATCAAGAATCTTGCCAAGCAAACGACATCCGAAGATTTGGCT
TgtttattttcaagatttttcgtTCAGAATCAATCAAGCGTGGAGTATAA
GTTACTTCAACAAGGTCGTATGAGAGGACAAGCCTTTGTGACATTTTCTG
ATCTTGAATGCGCTGTCCGCGCTTTAAATCTTTGTAATGGCTACATGCTT
CATGGAAAACCCATGGTTATTCAATATGGCCGACCTAGAAGTGAGggttg
aATGTTGTTGTTAATTTTGTCTTCAGAAATTTCTGGATCGTATGATGTCA
ACCATGCAGTCAAAAGAGCAAAAACTGatcTTTCTTTTGACCATCCAGTC
GTTGCAACGTTACGTGAATATGAAGAAAAAGTTAAGCTCAAGAAATTAAG
AAAGTCTTACAATCTGAACGAAGAAGATGAAGTTGAAGTTGAAGAAGAGG
AAGAGAAAAAATCATCTAACGAGACTATAGACATGGAAGACAACGACAAA
TCAAGCGATTTCATTGGTCCATTACACCGACCAATCAACGAGCGTGTCCA
ACCCACGCCTGAACAACTAATATATAAGAATCGTTTAGAGCTAAACCAAC
TGTTGGAGATTGAGAAATTCAAATCATACAAAGCTGGTAAACCCACAAAA
GTACTATACATCAAGAATCTTGCCAAGCAAACGACATCCGAAGATTTGGC
TTgtttattttcaagatttttcgtTCAGAATCAATCAAGCGTGGAGTATA
AGTTACTTCAACAAGGTCGTATGAGAGGACAAGCCTTTGTGACATTTTCT
GATCTTGAATGCGCTGTCCGCGCTTTAAATCTTTGTAATGGCTACATGCT
TCATGGAAAACCCATGGTTATTCAATATGGCCGACCTAGAAGTGAGggtt
gaATGTTGTTGTTAATTTTGTCTTCAGAAATTTCTGGATCGTATGATGTC
AACCATGCAGTCAAAAGAGCAAAAACTGatcTTTCTTTTGACCATCCAGT
CGTTGCAACGTTACGTGAATATGAAGAAAAAGTTAAGCTCAAGAAATTAA
GAAAGTCTTACAATCTGAACGAAGAAGATGAAGTTGAAGTTGAAGAAGAG
GAAGAGAAAAAATCATCTAACGAGACTATAGACATGGAAGACAACGACAA
ATCAAGCGATTTCATTGGTCCATTACACCGACCAATCAACGAGCGTGTCC
AACCCACGCCTGAACAACTAATATATAAGAATCGTTTAGAGCTAAACCAA
CTGTTGGAGATTGAGAAATTCAAATCATACAAAGCTGGTAAACCCACAAA
AGTACTATACATCAAGAATCTTGCCAAGCAAACGACATCCGAAGATTTGG
CTTgtttattttcaagatttttcgtTCAGAATCAATCAAGCGTGGAGTAT
AAGTTACTTCAACAAGGTCGTATGAGAGGACAAGCCTTTGTGACATTTTC
TGATCTTGAATGCGCTGTCCGCGCTTTAAATCTTTGTAATGGCTACATGC
TTCATGGAAAACCCATGGTTATTCAATATGGCCGACCTAGAAGTGAGggt
tgaATGTTGTTGTTAATTTTGTCTTCAGAAATTTCTGGATCGTATGATGT
CAACCATGCAGTCAAAAGAGCAAAAACTGatcTTTCTTTTGACCATCCAG
TCGTTGCAACGTTACGTGAATATGAAGAAAAAGTTAAGCTCAAGAAATTA
AGAAAGTCTTACAATCTGAACGAAGAAGATGAAGTTGAAGTTGAAGAAGA
GGAAGAGAAAAAATCATCTAACGAGACTATAGACATGGAAGACAACGACA
AATCAAGCGATTTCATTGGTCCATTACACCGACCAATCAACGAGCGTGTC
CAACCCACGCCTGAACAACTAATATATAAGAATCGTTTAGAGCTAAACCA
ACTGTTGGAGATTGAGAAATTCAAATCATACAAAGCTGGTAAACCCACAA
AAGTACTATACATCAAGAATCTTGCCAAGCAAACGACATCCGAAGATTTG
GCTTgtttattttcaagatttttcgtTCAGAATCAATCAAGCGTGGAGTA
TAAGTTACTTCAACAAGGTCGTATGAGAGGACAAGCCTTTGTGACATTTT
CTGATCTTGAATGCGCTGTCCGCGCTTTAAATCTTTGTAATGGCTACATG
CTTCATGGAAAACCCATGGTTATTCAATATGGCCGACCTAGAAGTGAGgg
ttgaATGTTGTTGTTAATTTTGTCTTCAGAAATTTCTGGATCGTATGATG
TCAACCATGCAGTCAAAAGAGCAAAAACTGatcTTTCTTTTGACCATCCA
GTCGTTGCAACGTTACGTGAATATGAAGAAAAAGTTAAGCTCAAGAAATT
AAGAAAGTCTTACAATCTGAACGAAGAAGATGAAGTTGAAGTTGAAGAAG
AGGAAGAGAAAAAATCATCTAACGAGACTATAGACATGGAAGACAACGAC
AAATCAAGCGATTTCATTGGTCCATTACACCGACCAATCAACGAGCGTGT
CCAACCCACGCCTGAACAACTAATATATAAGAATCGTTTAGAGCTAAACC
AACTGTTGGAGATTGAGAAATTCAAATCATACAAAGCTGGTAAACCCACA
AAAGTACTATACATCAAGAATCTTGCCAAGCAAACGACATCCGAAGATTT
GGCTTgtttattttcaagatttttcgtTCAGAATCAATCAAGCGTGGAGT
ATAAGTTACTTCAACAAGGTCGTATGAGAGGACAAGCCTTTGTGACATTT
TCTGATCTTGAATGCGCTGTCCGCGCTTTAAATCTTTGTAATGGCTACAT
GCTTCATGGAAAACCCATGGTTATTCAATATGGCCGACCTAGAAGTGAGg
gttgaATGTTGTTGTTAATTTTGTCTTCAGAAATTTCTGGATCGTATGAT
GTCAACCATGCAGTCAAAAGAGCAAAAACTGatcTTTCTTTTGACCATCC
AGTCGTTGCAACGTTACGTGAATATGAAGAAAAAGTTAAGCTCAAGAAAT
TAAGAAAGTCTTACAATCTGAACGAAGAAGATGAAGTTGAAGTTGAAGAA
GAGGAAGAGAAAAAATCATCTAACGAGACTATAGACATGGAAGACAACGA
CAAATCAAGCGATTTCATTGGTCCATTACACCGACCAATCAACGAGCGTG
TCCAACCCACGCCTGAACAACTAATATATAAGAATCGTTTAGAGCTAAAC
CAACTGTTGGAGATTGAGAAATTCAAATCATACAAAGCTGGTAAACCCAC
AAAAGTACTATACATCAAGAATCTTGCCAAGCAAACGACATCCGAAGATT
TGGCTTgtttattttcaagatttttcgtTCAGAATCAATCAAGCGTGGAG
TATAAGTTACTTCAACAAGGTCGTATGAGAGGACAAGCCTTTGTGACATT
TTCTGATCTTGAATGCGCTGTCCGCGCTTTAAATCTTTGTAATGGCTACA
TGCTTCATGGAAAACCCATGGTTATTCAATATGGCCGACCTAGAAGTGAG
ggttga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007810XLOC_007810Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013959-proteinTCONS_00013959-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013959-exon-sc0000175-1491911889:279273..279510TCONS_00013959-exon-sc0000175-1491911889:279273..279510Clytia hemisphaericaexon
TCONS_00013959-exon-sc0000175-1510915933:279273..279510TCONS_00013959-exon-sc0000175-1510915933:279273..279510Clytia hemisphaericaexon
TCONS_00013959-exon-sc0000175-1575043694:279273..279510TCONS_00013959-exon-sc0000175-1575043694:279273..279510Clytia hemisphaericaexon
TCONS_00013959-exon-sc0000175-1491911889:282356..282528TCONS_00013959-exon-sc0000175-1491911889:282356..282528Clytia hemisphaericaexon
TCONS_00013959-exon-sc0000175-1510915933:282356..282528TCONS_00013959-exon-sc0000175-1510915933:282356..282528Clytia hemisphaericaexon
TCONS_00013959-exon-sc0000175-1575043694:282356..282528TCONS_00013959-exon-sc0000175-1575043694:282356..282528Clytia hemisphaericaexon
TCONS_00013959-exon-sc0000175-1491911889:285830..285949TCONS_00013959-exon-sc0000175-1491911889:285830..285949Clytia hemisphaericaexon
TCONS_00013959-exon-sc0000175-1510915933:285830..285949TCONS_00013959-exon-sc0000175-1510915933:285830..285949Clytia hemisphaericaexon
TCONS_00013959-exon-sc0000175-1575043694:285830..285949TCONS_00013959-exon-sc0000175-1575043694:285830..285949Clytia hemisphaericaexon
TCONS_00013959-exon-sc0000175-1491911889:287878..287912TCONS_00013959-exon-sc0000175-1491911889:287878..287912Clytia hemisphaericaexon
TCONS_00013959-exon-sc0000175-1510915933:287878..287912TCONS_00013959-exon-sc0000175-1510915933:287878..287912Clytia hemisphaericaexon
TCONS_00013959-exon-sc0000175-1575043694:287878..287912TCONS_00013959-exon-sc0000175-1575043694:287878..287912Clytia hemisphaericaexon
TCONS_00013959-exon-sc0000175-1491911889:288831..288998TCONS_00013959-exon-sc0000175-1491911889:288831..288998Clytia hemisphaericaexon
TCONS_00013959-exon-sc0000175-1510915933:288831..288998TCONS_00013959-exon-sc0000175-1510915933:288831..288998Clytia hemisphaericaexon
TCONS_00013959-exon-sc0000175-1575043694:288831..288998TCONS_00013959-exon-sc0000175-1575043694:288831..288998Clytia hemisphaericaexon
TCONS_00013959-exon-sc0000175-1491911889:290343..290493TCONS_00013959-exon-sc0000175-1491911889:290343..290493Clytia hemisphaericaexon
TCONS_00013959-exon-sc0000175-1510915933:290343..290493TCONS_00013959-exon-sc0000175-1510915933:290343..290493Clytia hemisphaericaexon
TCONS_00013959-exon-sc0000175-1575043694:290343..290493TCONS_00013959-exon-sc0000175-1575043694:290343..290493Clytia hemisphaericaexon
TCONS_00013959-exon-sc0000175-1491911889:291792..292588TCONS_00013959-exon-sc0000175-1491911889:291792..292588Clytia hemisphaericaexon
TCONS_00013959-exon-sc0000175-1510915933:291792..292588TCONS_00013959-exon-sc0000175-1510915933:291792..292588Clytia hemisphaericaexon
TCONS_00013959-exon-sc0000175-1575043694:291792..292588TCONS_00013959-exon-sc0000175-1575043694:291792..292588Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000175supercontigsc0000175:279273..292588 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.757042	0.695006	0.584603	0.592942	0.341045	0.315314	0.925596	0.777182	0.604763	0.706484	0.660792	0.711923	0.350273	0.342452	0.588511	0.643651	0.664802	0.668755	0.448057	0.388484	0.439725	0.429189	0.671239	0.886122	0.821416	1.04067	0.195943	0.227871	0.302397	0.290954
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
Blast
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BLAST of TCONS_00013959 vs. Swiss-Prot (Human)
Match: RBM41 (RNA-binding protein 41 OS=Homo sapiens GN=RBM41 PE=1 SV=2)

HSP 1 Score: 109.768 bits (273), Expect = 7.762e-26
Identity = 53/125 (42.40%), Postives = 83/125 (66.40%), Query Frame = 3 
Query:  594 FIGPLHRPINERVQPTPEQLIYKNRLELNQLLEIEKFKSYKAGKPTKVLYIKNLAKQTTSEDLACLFSRFFVQNQSSVEYKLLQQGRMRGQAFVTFSDLECAVRALNLCNGYMLHGKPMVIQYGR 968
            + GP  + + + ++  PE  I +NRL   ++ +I  F SY  G+P KVLY+KNL+ + T  DL  LF+RF  +    ++++++  GRMRGQAF+TF + E A +AL+L NGY LHGK +VI++G+
Sbjct:  265 WTGP--KKLTQPIEFVPEDEIQRNRLSEEEIRKIPMFSSYNPGEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMM-TGRMRGQAFITFPNKEIAWQALHLVNGYKLHGKILVIEFGK 386
The following BLAST results are available for this feature:
BLAST of TCONS_00013959 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RBM417.762e-2642.40RNA-binding protein 41 OS=Homo sapiens GN=RBM41 PE... [more]
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