TCONS_00013520-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00013520-protein
Unique Name	TCONS_00013520-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	355

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00013520-protein ID=TCONS_00013520-protein|Name=TCONS_00013520-protein|organism=Clytia hemisphaerica|type=polypeptide|length=355bp
KKRVHEMKKTEEQEFSNSLLNLILLESSSLLSIIGSLLIIVSYLLYKDIR
TPSRHIIVCMSISDLVYSTVNFLDAYAKSPNHDVYSDLCVLSSFMGSTAI
LWSFFWAVALSIFLNVLIVQKDPVFADTLIHKVFHPVCWLIPLIINVFAL
CFNKLGNTFDFVAPGWCWIEIKLNDVTGKVENRGDAIFWMTLNYKGIEIL
TYLTIALMYLRIKCHLKDKIKNFENSERKMSTFVSPKSVQAAKTTDRKLI
FIPIMLVLLRIWGTIRYILFIIQSKDGDMVHLRMSLADKAFLCLQTVGDN
LIGAVNCVLFCFLTPKVWNHLKESMSNMKSKLCCNKKQEIILDPDEKTKL
ISQSM

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_007548	XLOC_007548	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00013520	TCONS_00013520	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR022343	GCR1-cAMP_receptor
IPR019424	7TM_GPCR_Srsx
IPR017981	GPCR_2-like

Vocabulary: **Molecular Function**
Term	Definition
GO:0004888	transmembrane signaling receptor activity

Vocabulary: **Biological Process**
Term	Definition
GO:0007166	cell surface receptor signaling pathway

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007166	cell surface receptor signaling pathway
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0004888	transmembrane signaling receptor activity

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR022343	GCR1-cAMP receptor	PRINTS	PR02001	GCR1CAMPR	coord: 252..270 score: 23.78 coord: 89..107 score: 22.03 coord: 51..66 score: 19.21 coord: 32..50 score: 40.35
None	No IPR available	GENE3D	1.20.1070.10		coord: 3..341 e-value: 2.6E-24 score: 85.2
None	No IPR available	SUPERFAMILY	81321	Family A G protein-coupled receptor-like	coord: 24..331
IPR019424	Serpentine type 7TM GPCR chemoreceptor Srsx	PFAM	PF10320	7TM_GPCR_Srsx	coord: 30..177 e-value: 5.6E-5 score: 22.5
IPR017981	GPCR, family 2-like	PROSITE	PS50261	G_PROTEIN_RECEP_F2_4	coord: 21..314 score: 14.52

Blast

[Close]

BLAST of TCONS_00013520-protein vs. Swiss-Prot (Human)
Match: GP157 (G-protein coupled receptor 157 OS=Homo sapiens GN=GPR157 PE=2 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 4.291e-21
Identity = 79/287 (27.53%), Postives = 143/287 (49.83%), Query Frame = 0

Query:   28 SSLLSIIGSLLIIVSYLLYKDIRTPSRHIIVCMSISDLVYSTVNFLDAYAKSPNHDVYSDLCVLSSFMGSTAILWSFFWAVALSIFLNVLIVQKDPVFADTLIHKVFHPVCWLIPLIINVFALCFNKLGNTFDFVAPGWCWIEIKLNDVTGKVENRGDAIFWMTLNYKGIEILTYLTIALMYLRIKCHLKDKIKNFENSERKMSTFVSPKSVQAAKTTDRKLIFIPIMLVLLRIWGTIRYILFIIQSKDGDMVHLRMSLADKAFLCLQTVGDNLIGAVNCVLFCFLT 314
            S  LS +GS L++ ++ L+ D+R+ +R +++ +S++DL+ +   F   Y    N    S  CVL   + + A   SFFW VA++++L + IV+         +   FH V W +PL+I V A+   K+G     V+ GWCWI+++            D + WM L  K  E+L Y+ + L+YL ++ H+             +S     + ++ +   D+KL+ IP++ + LR+W T+R++L +  S          ++     + L  +G+   G  NC++F   T
Sbjct:   21 SCALSALGSGLLVATHALWPDLRSRARRLLLFLSLADLLSAASYF---YGVLQNFAGPSWDCVLQGALSTFANTSSFFWTVAIALYLYLSIVRAARGPRTDRLLWAFHVVSWGVPLVITVAAVALKKIGYDASDVSVGWCWIDLEAK----------DHVLWMLLTGKLWEMLAYVLLPLLYLLVRKHINRAHTALSEYRPILSQ--EHRLLRHSSMADKKLVLIPLIFIGLRVWSTVRFVLTLCGSP---------AVQTPVLVVLHGIGNTFQGGANCIMFVLCT 283

The following BLAST results are available for this feature:

BLAST of TCONS_00013520-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00013520-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
GP157	4.291e-21	27.53	G-protein coupled receptor 157 OS=Homo sapiens GN=...	[more]

You are here

TCONS_00013520-protein (polypeptide) - C. hemisphaerica