TCONS_00013520 (transcript) - C. hemisphaerica

Overview
NameTCONS_00013520
Unique NameTCONS_00013520
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1205

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00013520 ID=TCONS_00013520|Name=TCONS_00013520|organism=Clytia hemisphaerica|type=transcript|length=1205bp
aaaaaaaagagtcCATGAGATGAAGAAGACTGAAgaacaagaattttcaa
attcattatTAAATTTAATTCTACTGGAATCATCTTCTCTGCTTTCAATT
ATCGGAAGTCTTCTTATTATTGTGAGTTATTTGTTGTATAAAGACATCCG
GACACCGTCAAGACATATCATAGTATGTATGAGCATCTCTGACTTGGTTT
ACTCTACGGTAAACTTTCTCGATGCATATGCTAAGAGTCCAAACCATGAT
GTTTATTCAGATTTATGTGTATTAAGCAGTTTCATGGGTTCAACAGCAAT
TTTATGGTCGTTTTTTTGGGCAGTGGCACTATCAATATTTCTTAATGTGC
TAATCGTGCAAAAAGATCCTGTATTTGCAGATACATTGATTCATAAAGTA
TTTCACCCAGTGTGTTGGCTTATACCTCTAATTATAAATGTATTTGCATT
GTGCTTCAACAAACTTGGTAATACGTTTGACTTTGTTGCTCCTGGTTGGT
GCTGGATAGAAATAAAATTAAACGATGTTACTGGGAAGGTCGAAAATAGA
GGTGATGCAATATTTTGGATGACATTAAATTATAAAGGAATTGAAATTCT
GACGTATCTAACAATTGCTTTGATGTATTTGAGGATTAAATGCCACTTGA
AGGATAAGATAAAGAATTTCGAAAATAGTGAACGCAAGATGTCAACTTTT
GTATCACCGAAATCAGTTCAAGCGGCAAAAACAACAGATCGTAAATTAAT
TTTCATACCAATTATGTTGGTGTTGTTGCGTATTTGGGGAACCATACGTT
ATATTTTGTTCATTATACAGAGTAAGGATGGAGATATGGTTCATCTAAGA
ATGAGTTTAGCCGACAAAGCCTTCCTTTGTTTACAGactGTTGGTGACAA
CTTGATCGGAGCTGTCAATTGTGTCCTGTTTTGTTTTCTCACACCAAAAG
TATGGAATCATCTTAAAGAGTCAATGTCTAACATGAAGTCAAAACTTTGC
TGCAACAAAAAGCAAGAGATTATCTTAGACCCTGATGAAAAGACAAAGCT
TATTTCCCAAAGCATGTGAAAATTGGTACTGTAGGTTTTATTGATGACTA
AAAAACGAAAGAGCATTCTTTCAATGACGTTCTAATGGCGTGATTGTTTC
TCCAACTTTCGGTTTGTAAGAAGTGATGATAGCTTTCAGACCCTGGGTGT
TTACT
Run BLAST on NCBI

protein sequence of TCONS_00013520-protein

>TCONS_00013520-protein ID=TCONS_00013520-protein|Name=TCONS_00013520-protein|organism=Clytia hemisphaerica|type=polypeptide|length=355bp
KKRVHEMKKTEEQEFSNSLLNLILLESSSLLSIIGSLLIIVSYLLYKDIR
TPSRHIIVCMSISDLVYSTVNFLDAYAKSPNHDVYSDLCVLSSFMGSTAI
LWSFFWAVALSIFLNVLIVQKDPVFADTLIHKVFHPVCWLIPLIINVFAL
CFNKLGNTFDFVAPGWCWIEIKLNDVTGKVENRGDAIFWMTLNYKGIEIL
TYLTIALMYLRIKCHLKDKIKNFENSERKMSTFVSPKSVQAAKTTDRKLI
FIPIMLVLLRIWGTIRYILFIIQSKDGDMVHLRMSLADKAFLCLQTVGDN
LIGAVNCVLFCFLTPKVWNHLKESMSNMKSKLCCNKKQEIILDPDEKTKL
ISQSM
Run BLAST on NCBI

transcript from alignment at sc0000168:454533..457540-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00013520 ID=TCONS_00013520|Name=TCONS_00013520|organism=Clytia hemisphaerica|type=transcript|length=3008bp|location=Sequence derived from alignment at sc0000168:454533..457540- (Clytia hemisphaerica)
AAAAAAAAGAGTCCATGAGATGAAGAAGACTGAAGAACAAGAATTTTCAA
ATTCATTATTAAATTTAATTCTACTGGAATCATCTTCTCTGCTTTCAATT
ATCGGAAGTCTTCTTATTATTGTGAGTTATTTGTTGTATAAAGACATCCG
GACACCGTCAAGACATATCATAGTATGTATGAGCATCTCTGACTTGGTTT
ACTCTACGGTAAACTTTCTCGATGCATATGCTAAGAGTCCAAACCATGAT
GTTTATTCAGATTTATGTGTATTAAGCAGTTTCATGGGTTCAACAGCAAT
TTTATGGTCGTTTTTTTGGGCAGTGGCACTATCAATATTTCTTAATGTGC
TAATCGTGCAAAAAGATCCTGTATTTGCAGATACATTGATTCATAAAGTA
TTTCACCCAGTGTGTTGGCTTATACCTCTAATTATAAATGTATTTGCATT
GTGCTTCAACAAACTTGGTAATACGTTTGACTTTGTTGCTCCTGGTTGGT
GCTGGATAGAAATAAAATTAAACGGTGAGAAACATTCTCATTTTTGTGCT
ATATTTTTAATGACAGTTATAAAATCTGCAATCAGAATCTCAAATTAAAA
GCTCAAAGTTGACTGCTGCTGCTGCGGATTATAATACAGACTACTCCATT
TAGCTATTTATTCAATCTATTCTATTTCCCTTTTTCCAAAAATATGAATT
TTTCAGATTTATTACAACTGATAAAGCTGCACCTTTGTAACAAGTACTAT
CTTTCTTAATAGATGTTACTGGGAAGGTCGAAAATAGAGGTGATGCAATA
TTTTGGATGACATTAAATTATAAAGGAATTGAAATTCTGACGTATCTAAC
AATTGCTTTGATGTATTTGAGGATTAAATGCCACTTGAAGGATAAGGTTT
TTATTATCAATTCTATGTTGTTGTTTTTTCCATTTTTTTCAATCAGTTTC
AATAAAAAAGCAAAGCCTAATTTCATTCATACTTAGTCTATTCTCAACTT
CAGTTGAGAAACTTTCAACTTATGCTGAAATCTTTCACACTTGTTCTTTG
GCTGAATATATGGGGGTGTTTTTTTTCATTTTTTGAAAATTTTGATTTTT
AGGGGCGTGGTCACGAGTTTTTCGCCAAAACGAGGCTAAAAACTTTGGGA
CAGACAGACTTAAAAAATTGTCCGATTTGGTTGAAATTGGTTACTTTTAT
CAATTTTCCAATTGGACCTACAAATTGAAGAATGAAAAATTGAAGATGAA
ACCAGTGCGGTTAACACGTTCAACAGTGTTGCAATAATTGCTGAAAAGGC
AGGTTTTAATTATGAATAAGAGAGGAAATGATTGCTAGTGTCAAATTACT
TAAAAAGTTATAGGTGTAAAAATACTCTTTTCTTGAATTTTCTAATTCTA
GATAAAGAATTTCGAAAATAGTGAACGCAAGATGTCAACTTTTGTATCAC
CGAAATCAGTTCAAGCGGCAAAAACAACAGATCGTAAATTAATTTTCATA
CCAATTATGTTGGTGTTGTTGCGTATTTGGGGAACCATACGTTATATTTT
GTTCATTATACAGAGTAAGGATGGAGATATGGTTCATCTAAGAATGAGTT
TAGCCGACAAAGCCTTCCTTTGTTTACAGGTGCGTTAAGTATTGTTTTAA
AGTTTGACTTTTTTTTGGACCTACCTTCGGGTACCCCGGTGGAGGTTCTA
TAAATTAACCCATGTCCGTTCGTTCGTCTGTTACCAGCTTTTCTCAGGAT
TGGCTCATTAGTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAATGATGCAA
AATGGCAATGCCCAGAACGTGACGGAGCCCGATTTTTGAGAAAAAATTTA
TTTGGGCAAATTTGGGCCAAAAACTACCTAAAAATAGGGCTTTTTGGACT
TTGTGCAAAATCATGTACTTCATTTTTTCTGATTTTTTGTACAAAGATGG
AGGGCAAGATTCTCTAAAGAATGGCTGAAGTGGTTTTTCCCGGAAAATTC
TTATTCGCCTTAAAAAACGGATTTTCGTATTTTGGGGAAATTCCCTTACC
AAATAAGAAAATATACCTTTTCTCAATGTTGACTGATAATTTTTTTCTGA
ATTTTTGCACAATGATGCAAAATGGCAATGCCCAAAATGTGACGGAACCA
GATTTTTAAGGAAAATTTTTTTGGGCAAATTTGGGCCAAAAACTGCTTAA
AAAAAGGGTTTTTTGGGCCTGAATGGTTTAAGTGATTTTCGTATCTGGGG
AAATTCGTTTTTACCATTTTACATTATTCAACACACAAGCTTTATTTTTC
CATTCTGAATTTTTGTACAGTTATTGTCACTTTTTTCTTATTTTCATCTG
ATGTTAATCATTAGGTAGGTCCATTCAGCATGTTGCTTGTTTAACTTTAC
TTTATTTGCAGGATTAGTATTGAAATATTTTATTTAGGAAAAAACTAACA
GGATCTAGGGAGGATTTGGTTGGTAAGTTATCAAGTCACTTTGCCCCAGC
TTTTTTTTCACCAATAAGTTATTTTCTTTAACTGAATTTTTGTCTTTTCT
TATAATTATACATTTTCAAGTTGGTTTTTTTTATTTCAGACTGTTGGTGA
CAACTTGATCGGAGCTGTCAATTGTGTCCTGTTTTGTTTTCTCACACCAA
AAGTATGGAATCATCTTAAAGAGTCAATGTCTAACATGAAGTCAAAACTT
TGCTGCAACAAAAAGCAAGAGATTATCTTAGACCCTGATGAAAAGACAAA
GCTTATTTCCCAAAGCATGTGAAAATTGGTACTGTAGGTTTTATTGATGA
CTAAAAAACGAAAGAGCATTCTTTCAATGACGTTCTAATGGCGTGATTGT
TTCTCCAACTTTCGGTTTGTAAGAAGTGATGATAGCTTTCAGACCCTGGG
TGTTTACT

Coding sequence (CDS) from alignment at sc0000168:454533..457540-

>TCONS_00013520 ID=TCONS_00013520|Name=TCONS_00013520|organism=Clytia hemisphaerica|type=CDS|length=4272bp|location=Sequence derived from alignment at sc0000168:454533..457540- (Clytia hemisphaerica)
ACTGTTGGTGACAACTTGATCGGAGCTGTCAATTGTGTCCTGTTTTGTTT
TCTCACACCAAAAGTATGGAATCATCTTAAAGAGTCAATGTCTAACATGA
AGTCAAAACTTTGCTGCAACAAAAAGCAAGAGATTATCTTAGACCCTGAT
GAAAAGACAAAGCTTATTTCCCAAAGCATGTGAATAAAGAATTTCGAAAA
TAGTGAACGCAAGATGTCAACTTTTGTATCACCGAAATCAGTTCAAGCGG
CAAAAACAACAGATCGTAAATTAATTTTCATACCAATTATGTTGGTGTTG
TTGCGTATTTGGGGAACCATACGTTATATTTTGTTCATTATACAGAGTAA
GGATGGAGATATGGTTCATCTAAGAATGAGTTTAGCCGACAAAGCCTTCC
TTTGTTTACAGATGTTACTGGGAAGGTCGAAAATAGAGGTGATGCAATAT
TTTGGATGACATTAAATTATAAAGGAATTGAAATTCTGACGTATCTAACA
ATTGCTTTGATGTATTTGAGGATTAAATGCCACTTGAAGGATAAGAAAAA
AAGAGTCCATGAGATGAAGAAGACTGAAGAACAAGAATTTTCAAATTCAT
TATTAAATTTAATTCTACTGGAATCATCTTCTCTGCTTTCAATTATCGGA
AGTCTTCTTATTATTGTGAGTTATTTGTTGTATAAAGACATCCGGACACC
GTCAAGACATATCATAGTATGTATGAGCATCTCTGACTTGGTTTACTCTA
CGGTAAACTTTCTCGATGCATATGCTAAGAGTCCAAACCATGATGTTTAT
TCAGATTTATGTGTATTAAGCAGTTTCATGGGTTCAACAGCAATTTTATG
GTCGTTTTTTTGGGCAGTGGCACTATCAATATTTCTTAATGTGCTAATCG
TGCAAAAAGATCCTGTATTTGCAGATACATTGATTCATAAAGTATTTCAC
CCAGTGTGTTGGCTTATACCTCTAATTATAAATGTATTTGCATTGTGCTT
CAACAAACTTGGTAATACGTTTGACTTTGTTGCTCCTGGTTGGTGCTGGA
TAGAAATAAAATTAAACGACTGTTGGTGACAACTTGATCGGAGCTGTCAA
TTGTGTCCTGTTTTGTTTTCTCACACCAAAAGTATGGAATCATCTTAAAG
AGTCAATGTCTAACATGAAGTCAAAACTTTGCTGCAACAAAAAGCAAGAG
ATTATCTTAGACCCTGATGAAAAGACAAAGCTTATTTCCCAAAGCATGTG
AATAAAGAATTTCGAAAATAGTGAACGCAAGATGTCAACTTTTGTATCAC
CGAAATCAGTTCAAGCGGCAAAAACAACAGATCGTAAATTAATTTTCATA
CCAATTATGTTGGTGTTGTTGCGTATTTGGGGAACCATACGTTATATTTT
GTTCATTATACAGAGTAAGGATGGAGATATGGTTCATCTAAGAATGAGTT
TAGCCGACAAAGCCTTCCTTTGTTTACAGATGTTACTGGGAAGGTCGAAA
ATAGAGGTGATGCAATATTTTGGATGACATTAAATTATAAAGGAATTGAA
ATTCTGACGTATCTAACAATTGCTTTGATGTATTTGAGGATTAAATGCCA
CTTGAAGGATAAGAAAAAAAGAGTCCATGAGATGAAGAAGACTGAAGAAC
AAGAATTTTCAAATTCATTATTAAATTTAATTCTACTGGAATCATCTTCT
CTGCTTTCAATTATCGGAAGTCTTCTTATTATTGTGAGTTATTTGTTGTA
TAAAGACATCCGGACACCGTCAAGACATATCATAGTATGTATGAGCATCT
CTGACTTGGTTTACTCTACGGTAAACTTTCTCGATGCATATGCTAAGAGT
CCAAACCATGATGTTTATTCAGATTTATGTGTATTAAGCAGTTTCATGGG
TTCAACAGCAATTTTATGGTCGTTTTTTTGGGCAGTGGCACTATCAATAT
TTCTTAATGTGCTAATCGTGCAAAAAGATCCTGTATTTGCAGATACATTG
ATTCATAAAGTATTTCACCCAGTGTGTTGGCTTATACCTCTAATTATAAA
TGTATTTGCATTGTGCTTCAACAAACTTGGTAATACGTTTGACTTTGTTG
CTCCTGGTTGGTGCTGGATAGAAATAAAATTAAACGACTGTTGGTGACAA
CTTGATCGGAGCTGTCAATTGTGTCCTGTTTTGTTTTCTCACACCAAAAG
TATGGAATCATCTTAAAGAGTCAATGTCTAACATGAAGTCAAAACTTTGC
TGCAACAAAAAGCAAGAGATTATCTTAGACCCTGATGAAAAGACAAAGCT
TATTTCCCAAAGCATGTGAATAAAGAATTTCGAAAATAGTGAACGCAAGA
TGTCAACTTTTGTATCACCGAAATCAGTTCAAGCGGCAAAAACAACAGAT
CGTAAATTAATTTTCATACCAATTATGTTGGTGTTGTTGCGTATTTGGGG
AACCATACGTTATATTTTGTTCATTATACAGAGTAAGGATGGAGATATGG
TTCATCTAAGAATGAGTTTAGCCGACAAAGCCTTCCTTTGTTTACAGATG
TTACTGGGAAGGTCGAAAATAGAGGTGATGCAATATTTTGGATGACATTA
AATTATAAAGGAATTGAAATTCTGACGTATCTAACAATTGCTTTGATGTA
TTTGAGGATTAAATGCCACTTGAAGGATAAGAAAAAAAGAGTCCATGAGA
TGAAGAAGACTGAAGAACAAGAATTTTCAAATTCATTATTAAATTTAATT
CTACTGGAATCATCTTCTCTGCTTTCAATTATCGGAAGTCTTCTTATTAT
TGTGAGTTATTTGTTGTATAAAGACATCCGGACACCGTCAAGACATATCA
TAGTATGTATGAGCATCTCTGACTTGGTTTACTCTACGGTAAACTTTCTC
GATGCATATGCTAAGAGTCCAAACCATGATGTTTATTCAGATTTATGTGT
ATTAAGCAGTTTCATGGGTTCAACAGCAATTTTATGGTCGTTTTTTTGGG
CAGTGGCACTATCAATATTTCTTAATGTGCTAATCGTGCAAAAAGATCCT
GTATTTGCAGATACATTGATTCATAAAGTATTTCACCCAGTGTGTTGGCT
TATACCTCTAATTATAAATGTATTTGCATTGTGCTTCAACAAACTTGGTA
ATACGTTTGACTTTGTTGCTCCTGGTTGGTGCTGGATAGAAATAAAATTA
AACGACTGTTGGTGACAACTTGATCGGAGCTGTCAATTGTGTCCTGTTTT
GTTTTCTCACACCAAAAGTATGGAATCATCTTAAAGAGTCAATGTCTAAC
ATGAAGTCAAAACTTTGCTGCAACAAAAAGCAAGAGATTATCTTAGACCC
TGATGAAAAGACAAAGCTTATTTCCCAAAGCATGTGAATAAAGAATTTCG
AAAATAGTGAACGCAAGATGTCAACTTTTGTATCACCGAAATCAGTTCAA
GCGGCAAAAACAACAGATCGTAAATTAATTTTCATACCAATTATGTTGGT
GTTGTTGCGTATTTGGGGAACCATACGTTATATTTTGTTCATTATACAGA
GTAAGGATGGAGATATGGTTCATCTAAGAATGAGTTTAGCCGACAAAGCC
TTCCTTTGTTTACAGATGTTACTGGGAAGGTCGAAAATAGAGGTGATGCA
ATATTTTGGATGACATTAAATTATAAAGGAATTGAAATTCTGACGTATCT
AACAATTGCTTTGATGTATTTGAGGATTAAATGCCACTTGAAGGATAAGA
AAAAAAGAGTCCATGAGATGAAGAAGACTGAAGAACAAGAATTTTCAAAT
TCATTATTAAATTTAATTCTACTGGAATCATCTTCTCTGCTTTCAATTAT
CGGAAGTCTTCTTATTATTGTGAGTTATTTGTTGTATAAAGACATCCGGA
CACCGTCAAGACATATCATAGTATGTATGAGCATCTCTGACTTGGTTTAC
TCTACGGTAAACTTTCTCGATGCATATGCTAAGAGTCCAAACCATGATGT
TTATTCAGATTTATGTGTATTAAGCAGTTTCATGGGTTCAACAGCAATTT
TATGGTCGTTTTTTTGGGCAGTGGCACTATCAATATTTCTTAATGTGCTA
ATCGTGCAAAAAGATCCTGTATTTGCAGATACATTGATTCATAAAGTATT
TCACCCAGTGTGTTGGCTTATACCTCTAATTATAAATGTATTTGCATTGT
GCTTCAACAAACTTGGTAATACGTTTGACTTTGTTGCTCCTGGTTGGTGC
TGGATAGAAATAAAATTAAACG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007548XLOC_007548Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013520-exon-sc0000168-1575043694:457017..457540TCONS_00013520-exon-sc0000168-1575043694:457017..457540Clytia hemisphaericaexon
TCONS_00013520-exon-sc0000168-1575043694:456645..456778TCONS_00013520-exon-sc0000168-1575043694:456645..456778Clytia hemisphaericaexon
TCONS_00013520-exon-sc0000168-1575043694:455912..456139TCONS_00013520-exon-sc0000168-1575043694:455912..456139Clytia hemisphaericaexon
TCONS_00013520-exon-sc0000168-1575043694:454533..454851TCONS_00013520-exon-sc0000168-1575043694:454533..454851Clytia hemisphaericaexon
TCONS_00013520-exon-sc0000168-1510915933:457017..457540TCONS_00013520-exon-sc0000168-1510915933:457017..457540Clytia hemisphaericaexon
TCONS_00013520-exon-sc0000168-1510915933:456645..456778TCONS_00013520-exon-sc0000168-1510915933:456645..456778Clytia hemisphaericaexon
TCONS_00013520-exon-sc0000168-1510915933:455912..456139TCONS_00013520-exon-sc0000168-1510915933:455912..456139Clytia hemisphaericaexon
TCONS_00013520-exon-sc0000168-1510915933:454533..454851TCONS_00013520-exon-sc0000168-1510915933:454533..454851Clytia hemisphaericaexon
TCONS_00013520-exon-sc0000168-1491911889:457017..457540TCONS_00013520-exon-sc0000168-1491911889:457017..457540Clytia hemisphaericaexon
TCONS_00013520-exon-sc0000168-1491911889:456645..456778TCONS_00013520-exon-sc0000168-1491911889:456645..456778Clytia hemisphaericaexon
TCONS_00013520-exon-sc0000168-1491911889:455912..456139TCONS_00013520-exon-sc0000168-1491911889:455912..456139Clytia hemisphaericaexon
TCONS_00013520-exon-sc0000168-1491911889:454533..454851TCONS_00013520-exon-sc0000168-1491911889:454533..454851Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013520-proteinTCONS_00013520-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000168supercontigsc0000168:454533..457540 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.99473	2.18833	0.725959	0.67078	3.50662	1.89793	2.015	2.44377	2.58142	2.78852	3.35619	1.969	4.40632	3.3213	7.82759	9.57233	7.54067	7.01635	5.56617	7.13216	7.16345	5.94665	10.4963	10.0253	1.26205	1.53593	12.1129	8.80928	11.7421	8.33808
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR022343GCR1-cAMP_receptor
IPR0194247TM_GPCR_Srsx
IPR017981GPCR_2-like
Vocabulary: Molecular Function
TermDefinition
GO:0004888transmembrane signaling receptor activity
Vocabulary: Biological Process
TermDefinition
GO:0007166cell surface receptor signaling pathway
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007166 cell surface receptor signaling pathway
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0004888 transmembrane signaling receptor activity
Blast
[Close]
BLAST of TCONS_00013520 vs. Swiss-Prot (Human)
Match: GP157 (G-protein coupled receptor 157 OS=Homo sapiens GN=GPR157 PE=2 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 3.140e-20
Identity = 65/233 (27.90%), Postives = 112/233 (48.07%), Query Frame = 2 
Query:  266 CVLSSFMGSTAILWSFFWAVALSIFLNVLIVQKDPVFADTLIHKVFHPVCWLIPLIINVFALCFNKLGNTFDFVAPGWCWIEIKLNDVTGKVENRGDAIFWMTLNYKGIEILTYLTIALMYLRIKCHLKDKIKNFENSERKMSTFVSPKSVQAAKTTDRKLIFIPIMLVLLRIWGTIRYILFIIQSKDGDMVHLRMSLADKAFLCLQTVGDNLIGAVNCVLFCFLTPKVWNHL 964
            CVL   + + A   SFFW VA++++L + IV+         +   FH V W +PL+I V A+   K+G     V+ GWCWI+++            D + WM L  K  E+L Y+ + L+YL ++ H+         SE +       + ++ +   D+KL+ IP++ + LR+W T+R++L +  S          ++     + L  +G+   G  NC++F   T  V   L
Sbjct:   79 CVLQGALSTFANTSSFFWTVAIALYLYLSIVRAARGPRTDRLLWAFHVVSWGVPLVITVAAVALKKIGYDASDVSVGWCWIDLEAK----------DHVLWMLLTGKLWEMLAYVLLPLLYLLVRKHINRAHTAL--SEYRPILSQEHRLLRHSSMADKKLVLIPLIFIGLRVWSTVRFVLTLCGSP---------AVQTPVLVVLHGIGNTFQGGANCIMFVLCTRAVRTRL 290
The following BLAST results are available for this feature:
BLAST of TCONS_00013520 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
GP1573.140e-2027.90G-protein coupled receptor 157 OS=Homo sapiens GN=... [more]
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