TCONS_00012103-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00012103-protein
Unique Name	TCONS_00012103-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	941

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00012103-protein ID=TCONS_00012103-protein|Name=TCONS_00012103-protein|organism=Clytia hemisphaerica|type=polypeptide|length=941bp
MGEDAFDFDDLEIHESKSHIKSVRGFADQRRKLKPNRKNVASRNPVKVLQ
KRDDVIDDLEDGGSGTDEDDTNELVSSEKKLTNGSIKQILETNVVGRKGG
INTGRIKAREVELAKDAKKGLESKEDIHGASKGLRVTEKDRKTGVGTEKT
NPYDGVKEVMFFHIKGARHIQTRLIEPKTCNMNSGDVFVLVTPKYVHQWN
GKNCSIMEKARGSEVSAVVQQWKELGCTANNVNVMDENREKPGAQLKAFW
KILGDKKHIQKIEKVLDDKDFEKGILESNQFYEIECEDENNEDDECSLKL
LPKFSGKVPSKKWLDSHKAYVLDFGTEVYSWIGRHTKGAPRKKAADIGLE
HYNKGYACSTPIHPFNLNTKNENKSTHMERPEWSVYGRMAEKTENVAFRR
KFYDWPDPVDLKVKTVEAKVHAQLTKEFTEPTTPNLMTIRARDLIQPTPE
PLMILDGSFIGRGKGMRDEETLFRFGVTLNSLTVWQVAANSFEELPPERY
GVFYSGEAYIIKWNFEIFRTGIRNLKGGKSKQEDSGKDRIFFFFWQGQDC
SSSDKGTAALMTVEMDTEEGPQIPVQQGKEPPAFFQLFDGKMVIHAGKLS
DDPSYKKNRMYWVRNEVDVETCLVEVKLSSASLRSRGCFVIINGEEKKLY
LWQGIKASSSTIERSEQAAKNLQKNISKLGSKSFEMIHVSEGEEDNALWD
TLGDEEDYMSYIEVAKTFDFTPRCFAFDSLHGYFRFTEITSTAYSPEHIC
PFPVLQNDLYELSQPGLVFIDLKYKMFLWQGWWPASDDETIDSKGPNTHA
EKHRFDVNRKLAMESVMNYAEECGRNLSRIYLVFAGCEPLEFTNICPHWQ
QREEITNIQKEAGYQPGEKRKLQTVLEQLSKDEYTLEELKQKPLPEGVDP
TRIEYYLNKEDFKKLFGVGKEEFPKLPRWKQIDLKKKTGLF

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_006806	XLOC_006806	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00012103	TCONS_00012103	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR007122	Villin/Gelsolin
IPR003128	Villin_headpiece
IPR029006	ADF-H/Gelsolin-like_dom
IPR007123	Gelsolin-like_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0051015	actin filament binding
GO:0003779	actin binding

Vocabulary: **Biological Process**
Term	Definition
GO:0007010	cytoskeleton organization

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007010	cytoskeleton organization
molecular_function	GO:0003779	actin binding
molecular_function	GO:0051015	actin filament binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 655..682
None	No IPR available	COILS	Coil	Coil	coord: 872..892
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 120..150
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 19..76
None	No IPR available	SUPERFAMILY	55753	Actin depolymerizing proteins	coord: 602..709
None	No IPR available	SUPERFAMILY	55753	Actin depolymerizing proteins	coord: 481..616
None	No IPR available	SUPERFAMILY	55753	Actin depolymerizing proteins	coord: 310..408
None	No IPR available	SUPERFAMILY	55753	Actin depolymerizing proteins	coord: 158..258
None	No IPR available	SUPERFAMILY	55753	Actin depolymerizing proteins	coord: 694..849
IPR007122	Villin/Gelsolin	SMART	SM00262	VILL_6	coord: 159..256 e-value: 2.4E-5 score: 33.8 coord: 480..591 e-value: 4.5E-16 score: 69.4 coord: 608..705 e-value: 1.8E-7 score: 40.8
IPR003128	Villin headpiece	SMART	SM00153	VHP_1	coord: 906..941 e-value: 5.5E-13 score: 59.1
IPR003128	Villin headpiece	GENE3D	1.10.950.10		coord: 880..941 e-value: 1.2E-21 score: 76.1
IPR003128	Villin headpiece	PFAM	PF02209	VHP	coord: 906..941 e-value: 1.3E-13 score: 50.6
IPR003128	Villin headpiece	PROSITE	PS51089	HP	coord: 878..941 score: 20.486
IPR003128	Villin headpiece	SUPERFAMILY	47050	VHP, Villin headpiece domain	coord: 879..941
IPR029006	ADF-H/Gelsolin-like domain	GENE3D	3.40.20.10		coord: 478..602 e-value: 2.6E-25 score: 87.9
IPR029006	ADF-H/Gelsolin-like domain	GENE3D	3.40.20.10		coord: 716..863 e-value: 5.1E-16 score: 58.1
IPR029006	ADF-H/Gelsolin-like domain	GENE3D	3.40.20.10		coord: 278..421 e-value: 8.6E-11 score: 41.2 coord: 603..715 e-value: 1.3E-12 score: 47.1 coord: 149..274 e-value: 1.0E-12 score: 47.4
IPR007123	Gelsolin-like domain	PFAM	PF00626	Gelsolin	coord: 625..673 e-value: 9.2E-5 score: 22.2 coord: 500..584 e-value: 3.0E-5 score: 23.7

Blast

[Close]

BLAST of TCONS_00012103-protein vs. Swiss-Prot (Human)
Match: SVIL (Supervillin OS=Homo sapiens GN=SVIL PE=1 SV=2)

HSP 1 Score: 515.768 bits (1327), Expect = 3.935e-159
Identity = 319/938 (34.01%), Postives = 486/938 (51.81%), Query Frame = 0

Query:   21 KSVRGFADQRRKLKPNRKNVASRNPVKVLQKRDDVIDDLEDGGSGTDEDDTNELVSSEKKLTNGSIKQILETNVVGRKGGINTGRIKAREVELAKDAKKGLESKEDIHGAS-KGLRVTEKDRKTGVGTEKTNPYDGVKEVMFFHIKGARHIQTRLIEPKTCNMNSGDVFVLVTPKYVHQWNGKNCSIMEKARGSEVSAVVQQWKELGCTANNVNVMDENREKPGAQLKAFWKILGDKKHIQKIEKVLDDKDFEKGILESNQFYEIECEDENNEDDECSLKLLPKFSGKVPSKKWLDSHKAYVLDFGTEVYSWIGRHTKGAPRKKAADIGLEHYNKGY---ACS-TPIHPFNLNTKNENKSTHMERPEWSVYGRMAEKTENVAFRRKFYDWPDPVDLKVKTVEAKVHAQLTKEFTEPTTPNLMTIRARDLIQPTPEPLMILDGSFIGRGKGMRDEETLFRFGVTLNSLTVWQVAANSFEELPPERYGVFYSGEAYIIKWNFEIFRTGIRNLKGGKSKQEDSGKDRIFFFFWQGQDCSSSDKGTAALMTVEMDTEEGPQIPVQQGKEPPAFFQLFDGKMVIHAGKLSDDPSYKKN--RMYWVRNEVDVETCLVEVKLSSASLRSRGCFVIINGEEKKLYLWQGIKASSSTIERSEQAAKNLQKNI---SKLGSKSFEMIH-VSEGEEDNALWDTLG--DEEDYMSYIEVAKTFDFTPRCFAFDSLHGYFRFTEITSTAYSPEHICPFPVLQNDLYELSQPGLVFIDLKYKMFLWQGWWPASDDETIDSKGPNTHAEKHRFDVNRKLAMESVMNYAEECGRNL----SRIYLVFAGCEPLEFTNICPHWQQREEITNIQKEAGYQPGEKRKLQTVLEQLSKDEYTLEELKQKPLPEGVDPTRIEYYLNKEDFKKLFGVGKEEFPKLPRWKQIDLKKKTGLF 941
            K     A+ +R ++P R+  AS+NP+K+L  R+D++ +                  +E++L N +  +     V       N       EV LA     GL SKE+    S + + +TE++           PY   K +M   IKG RH+QTRL+EP+   +NSGD F+L++P     W G+  +++EKA+ SE++ ++Q  +ELGC A  +  ++E         K FWK+LG +   Q      +D+ +E  I+E+N  Y +  +D+   DD+        + GK+P    L   +  V DFG+EVY W G+    A RK A  +    +N  +    C   P+ P   N     K     RP+W+++GR+ E  E + F+ KF DW      ++K    K   +L +   +P T        R +  P      ILDG  +GRG G+ +     +F +T  S+ VW +    +  LP +  G F+ G+AY++KW F +  T + + + G+     +GK++  +FFWQG+  + S+KGT+ALMTVE+D E G Q+ V QGKEPP F Q F G MV+H+G+  ++    ++  R+Y VR EV VE  L+EV    +SLRSR   V++N  +  +YLW G KA + T E    AA  +++     + L S S   IH   EG E    WD LG  D + Y   ++   +F+F PR F   S  G F  TE    A +P  +   P LQ DLY   QP L  +D  ++++LWQGWWP      I++K   T + + R+  +RK AME+V+ Y +  G+NL     + YL+ AG EPL FTN+ P W+ RE+I  I +       +   ++ VL +L K  Y L +L  +PLPEGVDP ++E YL  EDF+    + ++E+  LP WKQ++LKK  GLF
Sbjct: 1340 KLTSSVAEHKRAVRPKRRVQASKNPLKMLAAREDLLQEY-----------------TEQRL-NVAFMESKRMKVEKMSSNSNFS-----EVTLA-----GLASKENFSNVSLRSVNLTEQN-----SNNSAVPY---KRLMLLQIKGRRHVQTRLVEPRASALNSGDCFLLLSPHCCFLWVGEFANVIEKAKASELATLIQTKRELGCRATYIQTIEEGINTHTHAAKDFWKLLGGQTSYQSAGDPKEDELYEAAIIETNCIYRL-MDDKLVPDDD--------YWGKIPKCSLLQPKEVLVFDFGSEVYVWHGKEVTLAQRKIAFQLAKHLWNGTFDYENCDINPLDPGECNPLIPRKG--QGRPDWAIFGRLTEHNETILFKEKFLDW-----TELKRSNEKNPGELAQHKEDPRTDVKAYDVTRMVSMPQTTAGTILDGVNVGRGYGLVEGHDRRQFEITSVSVDVWHILEFDYSRLPKQSIGQFHEGDAYVVKWKF-MVSTAVGSRQKGEHSVRAAGKEKCVYFFWQGRHSTVSEKGTSALMTVELDEERGAQVQVLQGKEPPCFLQCFQGGMVVHSGRREEEEENVQSEWRLYCVRGEVPVEGNLLEVACHCSSLRSRTSMVVLNVNKALIYLWHGCKAQAHTKEVGRTAANKIKEQCPLEAGLHSSSKVTIHECDEGSEPLGFWDALGRRDRKAYDCMLQDPGSFNFAPRLFILSSSSGDFAATEFVYPARAPSVVSSMPFLQEDLYSAPQPALFLVDNHHEVYLWQGWWP------IENK--ITGSARIRWASDRKSAMETVLQYCK--GKNLKKPAPKSYLIHAGLEPLTFTNMFPSWEHREDIAEITEMDTEVSNQITLVEDVLAKLCKTIYPLADLLARPLPEGVDPLKLEIYLTDEDFEFALDMTRDEYNALPAWKQVNLKKAKGLF 2214

The following BLAST results are available for this feature:

BLAST of TCONS_00012103-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00012103-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
SVIL	3.935e-159	34.01	Supervillin OS=Homo sapiens GN=SVIL PE=1 SV=2	[more]

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TCONS_00012103-protein (polypeptide) - C. hemisphaerica