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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012103 ID=TCONS_00012103|Name=TCONS_00012103|organism=Clytia hemisphaerica|type=transcript|length=4437bpRun BLAST on NCBI protein sequence of TCONS_00012103-protein >TCONS_00012103-protein ID=TCONS_00012103-protein|Name=TCONS_00012103-protein|organism=Clytia hemisphaerica|type=polypeptide|length=941bp MGEDAFDFDDLEIHESKSHIKSVRGFADQRRKLKPNRKNVASRNPVKVLQRun BLAST on NCBI transcript from alignment at sc0000137:472741..509913+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00012103 ID=TCONS_00012103|Name=TCONS_00012103|organism=Clytia hemisphaerica|type=transcript|length=37173bp|location=Sequence derived from alignment at sc0000137:472741..509913+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000137:472741..509913+ >TCONS_00012103 ID=TCONS_00012103|Name=TCONS_00012103|organism=Clytia hemisphaerica|type=CDS|length=62172bp|location=Sequence derived from alignment at sc0000137:472741..509913+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00012103 vs. Swiss-Prot (Human)
Match: SVIL (Supervillin OS=Homo sapiens GN=SVIL PE=1 SV=2) HSP 1 Score: 513.072 bits (1320), Expect = 6.964e-152 Identity = 317/940 (33.72%), Postives = 484/940 (51.49%), Query Frame = 2
Query: 182 KSVRGFADQRRKLKPNRKNVASRNPVKVLQKRDDVIXXXXXXXXXXXXXXXNELVSSEKKLTNGSIKQILETNVVGRKGGINTGRIKAREVELAKDAKKGLESKEDIHGAS-KGLRVTEKDRKTGVGTEKTNPYDGVKEVMFFHIKGARHIQTRLIEPKTCNMNSGDVFVLVTPKYVHQWNGKNCSIMEKARGSEVSAVVQQWKELGCTANNVNVMDENREKPGAQLKAFWKILGDKKHIQKIEKVLDDKDFEKGILESNQFYEIXXXXXXXXXXXXSLKLLP--KFSGKVPSKKWLDSHKAYVLDFGTEVYSWIGRHTKGAPRKKAADIGLEHYNKGY---ACS-TPIHPFNLNTKNENKSTHMERPEWSVYGRMAEKTENVAFRRKFYDWPDPVDLKVKTVEAKVHAQLTKEFTEPTTPNLMTIRARDLIQPTPEPLMILDGSFIGRGKGMRDEETLFRFGVTLNSLTVWQVAANSFEELPPERYGVFYSGEAYIIKWNFEIFRTGIRNLKGGKSKQEDSGKDRIFFFFWQGQDCSSSDKGTAALMTVEMDTEEGPQIPVQQGKEPPAFFQLFDGKMVIHAGKLSDDPSYKKN--RMYWVRNEVDVETCLVEVKLSSASLRSRGCFVIINGEEKKLYLWQGIKASSSTIERSEQAAKNLQKNI---SKLGSKSFEMIH-VSEGEEDNALWDTLG--DEEDYMSYIEVAKTFDFTPRCFAFDSLHGYFRFTEITSTAYSPEHICPFPVLQNDLYELSQPGLVFIDLKYKMFLWQGWWPASDDETIDSKGPNTHAEKHRFDVNRKLAMESVMNYAEECGRNL----SRIYLVFAGCEPLEFTNICPHWQQREEITNIQKEAGYQPGEKRKLQTVLEQLSKDEYTLEELKQKPLPEGVDPTRIEYYLNKEDFKKLFGVGKEEFPKLPRWKQIDLKKKTGLF 2944
K A+ +R ++P R+ AS+NP+K+L R+D++ + + ++ + EK +N + EV LA GL SKE+ S + + +TE++ PY K +M IKG RH+QTRL+EP+ +NSGD F+L++P W G+ +++EKA+ SE++ ++Q +ELGC A + ++E K FWK+LG + Q +D+ +E I+E+N Y + + KL+P + GK+P L + V DFG+EVY W G+ A RK A + +N + C P+ P N K RP+W+++GR+ E E + F+ KF DW ++K K +L + +P T R + P ILDG +GRG G+ + +F +T S+ VW + + LP + G F+ G+AY++KW F + T + + + G+ +GK++ +FFWQG+ + S+KGT+ALMTVE+D E G Q+ V QGKEPP F Q F G MV+H+G+ ++ ++ R+Y VR EV VE L+EV +SLRSR V++N + +YLW G KA + T E AA +++ + L S S IH EG E WD LG D + Y ++ +F+F PR F S G F TE A +P + P LQ DLY QP L +D ++++LWQGWWP I++K T + + R+ +RK AME+V+ Y + G+NL + YL+ AG EPL FTN+ P W+ RE+I I + + ++ VL +L K Y L +L +PLPEGVDP ++E YL EDF+ + ++E+ LP WKQ++LKK GLF
Sbjct: 1340 KLTSSVAEHKRAVRPKRRVQASKNPLKMLAAREDLLQEYTEQRLNVAFMESKRM-KVEKMSSNSNFS----------------------EVTLA-----GLASKENFSNVSLRSVNLTEQNSNNSA-----VPY---KRLMLLQIKGRRHVQTRLVEPRASALNSGDCFLLLSPHCCFLWVGEFANVIEKAKASELATLIQTKRELGCRATYIQTIEEGINTHTHAAKDFWKLLGGQTSYQSAGDPKEDELYEAAIIETNCIYRLMDD-----------KLVPDDDYWGKIPKCSLLQPKEVLVFDFGSEVYVWHGKEVTLAQRKIAFQLAKHLWNGTFDYENCDINPLDPGECNPLIPRKG--QGRPDWAIFGRLTEHNETILFKEKFLDW-----TELKRSNEKNPGELAQHKEDPRTDVKAYDVTRMVSMPQTTAGTILDGVNVGRGYGLVEGHDRRQFEITSVSVDVWHILEFDYSRLPKQSIGQFHEGDAYVVKWKF-MVSTAVGSRQKGEHSVRAAGKEKCVYFFWQGRHSTVSEKGTSALMTVELDEERGAQVQVLQGKEPPCFLQCFQGGMVVHSGRREEEEENVQSEWRLYCVRGEVPVEGNLLEVACHCSSLRSRTSMVVLNVNKALIYLWHGCKAQAHTKEVGRTAANKIKEQCPLEAGLHSSSKVTIHECDEGSEPLGFWDALGRRDRKAYDCMLQDPGSFNFAPRLFILSSSSGDFAATEFVYPARAPSVVSSMPFLQEDLYSAPQPALFLVDNHHEVYLWQGWWP------IENK--ITGSARIRWASDRKSAMETVLQYCK--GKNLKKPAPKSYLIHAGLEPLTFTNMFPSWEHREDIAEITEMDTEVSNQITLVEDVLAKLCKTIYPLADLLARPLPEGVDPLKLEIYLTDEDFEFALDMTRDEYNALPAWKQVNLKKAKGLF 2214 The following BLAST results are available for this feature:
BLAST of TCONS_00012103 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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