TCONS_00011696-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00011696-protein
Unique Name	TCONS_00011696-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	326

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00011696-protein ID=TCONS_00011696-protein|Name=TCONS_00011696-protein|organism=Clytia hemisphaerica|type=polypeptide|length=326bp
MKTNFLILFELNENISTGDFTMTEIETAIKQMKNNKEPGLDSIPLGLWKL
PKCKEILLTFCNATLDGARPPEWGLSAIVPVPKKGDLTKTDNYRGISLSQ
VSAKIYNRLILNRRRPKIDKVLRPNQNGFRSSRSTSSQILALRRIIEEMK
DHKMEGVVTFIDFRKAFDSIDQKRMFKILHAYGIPPKIVDAIRIMYENNS
ATVLTQEGETEFFKIETGVLQGDPLAPFLFIIVLDYALRKAIKSSDGLTL
FRQRSRRHPSIHIADLDFADDIALIDESIKEAERVLHKVELATQSIGLFL
NIQKNQILAYQLNKQPKLQNHRWIRT

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_006566	XLOC_006566	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00011696	TCONS_00011696	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000477	RT_dom

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.30.70.270		coord: 119..319 e-value: 3.4E-26 score: 91.5
None	No IPR available	CDD	cd01650	RT_nLTR_like	coord: 76..310 e-value: 8.37327E-46 score: 155.527
None	No IPR available	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 27..306
IPR000477	Reverse transcriptase domain	PFAM	PF00078	RVT_1	coord: 81..310 e-value: 4.8E-38 score: 130.8
IPR000477	Reverse transcriptase domain	PROSITE	PS50878	RT_POL	coord: 62..326 score: 15.968

Blast

[Close]

BLAST of TCONS_00011696-protein vs. Swiss-Prot (Human)
Match: LORF2 (LINE-1 retrotransposable element ORF2 protein OS=Homo sapiens PE=1 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.257e-27
Identity = 95/310 (30.65%), Postives = 152/310 (49.03%), Query Frame = 0

Query:   21 TMTEIETAIKQMKNNKEPGLDSIPLGLWKLPKCKEILLTFC-----NATLDGARPPEWGLSAIVPVPKKG-DLTKTDNYRGISLSQVSAKIYNRLILNRRRPKIDKVLRPNQNGFRSSRSTSSQILALRRIIEEMKDHKMEG-VVTFIDFRKAFDSIDQKRMFKILHAYGIPPKIVDAIRIMYENNSATVLTQEGETEFFKIETGVLQGDPLAPFLFIIVLDYALRKAI---KSSDGLTLFRQRSRRHPSIHIADLDFADD-IALIDESIKEAERVLHKVELATQSIGLFLNIQKNQILAYQLNKQPKLQ 319
            T +EI   I  +   K PG D      ++  + KE L+ F      +   +G  P  +  ++I+ +PK G D TK +N+R ISL  + AKI N+++ NR +  I K++  +Q GF         I     +I+ +   K +  V+  ID  KAFD I Q  M K L+  GI    +  IR +Y+  +A ++    + E F ++TG  QG PL+P LF IVL+  L +AI   K   G+ L ++  +           FADD I  ++  I  A+ +L  +   ++  G  +N+QK+Q   Y  N+Q + Q
Sbjct:  454 TGSEIVAIINSLPTKKSPGPDGFTAEFYQ--RYKEELVPFLLKLFQSIEKEGILPNSFYEASIILIPKPGRDTTKKENFRPISLMNIDAKILNKILANRIQQHIKKLIHHDQVGFIPGMQGWFNIRKSINVIQHINRAKDKNHVIISIDAEKAFDKIQQPFMLKTLNKLGIDGMYLKIIRAIYDKPTANIILNGQKLEAFPLKTGTRQGCPLSPLLFNIVLE-VLARAIRQEKEIKGIQLGKEEVKLSL--------FADDMIVYLENPIVSAQNLLKLISNFSKVSGYKINVQKSQAFLYNNNRQTESQ 752

The following BLAST results are available for this feature:

BLAST of TCONS_00011696-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00011696-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
LORF2	3.257e-27	30.65	LINE-1 retrotransposable element ORF2 protein OS=H...	[more]

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TCONS_00011696-protein (polypeptide) - C. hemisphaerica