TCONS_00011696 (transcript) - C. hemisphaerica

Overview
NameTCONS_00011696
Unique NameTCONS_00011696
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1076

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00011696 ID=TCONS_00011696|Name=TCONS_00011696|organism=Clytia hemisphaerica|type=transcript|length=1076bp
GTTTCATTTCAGGAGACGATAGACTAAAAACTTGGAAAGACCACTTCCAG
AAACTACTTAACAACGTTACCACTGATGAAAACGAACTTTTTGATCCTTT
TTGAACTCAACGAAAACATCTCTACCGGAGACTTCACTATGACAGAAATT
GAAACAGCCatcaaacaaatgaaaaacaacaaGGAACCCGGTCTCGATAG
TATTCCACTCGGACTGTGGAAGCTCCCTAAATGTAAAGAAATTCTTCTTA
CCTTTTGCAATGCAACTCTAGATGGCGCTCGACCTCCTGAGTGGGGATTG
TCTGCCATCGTACCAGTTCCGAAGAAAGGTGATTTAACTAAAACCGATAA
CTATCGCGGAATCAGTCTCAGTCAAGTCTCGGCTAAAATCTATAATCGCT
TGATTCTAAATAGGCGGCGTCCTAAAATTGATAAAGTACTTCGACCAAAC
CAAAATGGGTTTCGTAGCTCTCGATCGACATCATCCCAGATCCTTGCCCT
CAGACGAATAATTGAAGAGATGAAAGATCACAAAATGGAAGGGGTTGTCA
CATTCATCGACTTCCGTAAGGCTTTCGACAGCATCGACCAAAAACGTATG
TTCAAAATCCTGCATGCATACGGAATTCCACCGAAGATAGTTGATGCCAT
CAGAATAATGTACGAAAACAACTCTGCGACAGTTCTTACTCAGGAAGGTG
AAACTGAGTTCTTTAAAATCGAAACAGGGGTATTACAAGGCGATCCACTT
GCACCTTTCTTATTTATCATCGTTCTGGACTACGCACTAAGAAAGGCCAT
AAAGAGTTCTGATGGATTGACTTTGTTTAGACAAAGAAGCCGCCGTCACC
CTTCAATTCATATTGCCGACTTAGACTTCGCAGACGATATTGCCCTAATT
GACGAAAGCATCAAAGAGGCAGAGCGTGTTCTCCACAAAGTTGAATTAGC
AACACAATCTATTGGCTTGTTTTTGAATATACAAAAAAACCAAATACTTG
CATATCAACTCAACAAGCAACCAAAGCTTCAAAACCATCGATGGATCAGA
ACTTGAAAAGGTCCAAGACTTCAAAT
Run BLAST on NCBI

protein sequence of TCONS_00011696-protein

>TCONS_00011696-protein ID=TCONS_00011696-protein|Name=TCONS_00011696-protein|organism=Clytia hemisphaerica|type=polypeptide|length=326bp
MKTNFLILFELNENISTGDFTMTEIETAIKQMKNNKEPGLDSIPLGLWKL
PKCKEILLTFCNATLDGARPPEWGLSAIVPVPKKGDLTKTDNYRGISLSQ
VSAKIYNRLILNRRRPKIDKVLRPNQNGFRSSRSTSSQILALRRIIEEMK
DHKMEGVVTFIDFRKAFDSIDQKRMFKILHAYGIPPKIVDAIRIMYENNS
ATVLTQEGETEFFKIETGVLQGDPLAPFLFIIVLDYALRKAIKSSDGLTL
FRQRSRRHPSIHIADLDFADDIALIDESIKEAERVLHKVELATQSIGLFL
NIQKNQILAYQLNKQPKLQNHRWIRT
Run BLAST on NCBI

transcript from alignment at sc0000131:100041..101116

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00011696 ID=TCONS_00011696|Name=TCONS_00011696|organism=Clytia hemisphaerica|type=transcript|length=1076bp|location=Sequence derived from alignment at sc0000131:100041..101116 (Clytia hemisphaerica)
ATTTGAAGTCTTGGACCTTTTCAAGTTCTGATCCATCGATGGTTTTGAAG
CTTTGGTTGCTTGTTGAGTTGATATGCAAGTATTTGGTTTTTTTGTATAT
TCAAAAACAAGCCAATAGATTGTGTTGCTAATTCAACTTTGTGGAGAACA
CGCTCTGCCTCTTTGATGCTTTCGTCAATTAGGGCAATATCGTCTGCGAA
GTCTAAGTCGGCAATATGAATTGAAGGGTGACGGCGGCTTCTTTGTCTAA
ACAAAGTCAATCCATCAGAACTCTTTATGGCCTTTCTTAGTGCGTAGTCC
AGAACGATGATAAATAAGAAAGGTGCAAGTGGATCGCCTTGTAATACCCC
TGTTTCGATTTTAAAGAACTCAGTTTCACCTTCCTGAGTAAGAACTGTCG
CAGAGTTGTTTTCGTACATTATTCTGATGGCATCAACTATCTTCGGTGGA
ATTCCGTATGCATGCAGGATTTTGAACATACGTTTTTGGTCGATGCTGTC
GAAAGCCTTACGGAAGTCGATGAATGTGACAACCCCTTCCATTTTGTGAT
CTTTCATCTCTTCAATTATTCGTCTGAGGGCAAGGATCTGGGATGATGTC
GATCGAGAGCTACGAAACCCATTTTGGTTTGGTCGAAGTACTTTATCAAT
TTTAGGACGCCGCCTATTTAGAATCAAGCGATTATAGATTTTAGCCGAGA
CTTGACTGAGACTGATTCCGCGATAGTTATCGGTTTTAGTTAAATCACCT
TTCTTCGGAACTGGTACGATGGCAGACAATCCCCACTCAGGAGGTCGAGC
GCCATCTAGAGTTGCATTGCAAAAGGTAAGAAGAATTTCTTTACATTTAG
GGAGCTTCCACAGTCCGAGTGGAATACTATCGAGACCGGGTTCCttgttg
tttttcatttgtttgatGGCTGTTTCAATTTCTGTCATAGTGAAGTCTCC
GGTAGAGATGTTTTCGTTGAGTTCAAAAAGGATCAAAAAGTTCGTTTTCA
TCAGTGGTAACGTTGTTAAGTAGTTTCTGGAAGTGGTCTTTCCAAGTTTT
TAGTCTATCGTCTCCTGAAATGAAAC

Coding sequence (CDS) from alignment at sc0000131:100041..101116

>TCONS_00011696 ID=TCONS_00011696|Name=TCONS_00011696|organism=Clytia hemisphaerica|type=CDS|length=981bp|location=Sequence derived from alignment at sc0000131:100041..101116 (Clytia hemisphaerica)
TCAAGTTCTGATCCATCGATGGTTTTGAAGCTTTGGTTGCTTGTTGAGTT
GATATGCAAGTATTTGGTTTTTTTGTATATTCAAAAACAAGCCAATAGAT
TGTGTTGCTAATTCAACTTTGTGGAGAACACGCTCTGCCTCTTTGATGCT
TTCGTCAATTAGGGCAATATCGTCTGCGAAGTCTAAGTCGGCAATATGAA
TTGAAGGGTGACGGCGGCTTCTTTGTCTAAACAAAGTCAATCCATCAGAA
CTCTTTATGGCCTTTCTTAGTGCGTAGTCCAGAACGATGATAAATAAGAA
AGGTGCAAGTGGATCGCCTTGTAATACCCCTGTTTCGATTTTAAAGAACT
CAGTTTCACCTTCCTGAGTAAGAACTGTCGCAGAGTTGTTTTCGTACATT
ATTCTGATGGCATCAACTATCTTCGGTGGAATTCCGTATGCATGCAGGAT
TTTGAACATACGTTTTTGGTCGATGCTGTCGAAAGCCTTACGGAAGTCGA
TGAATGTGACAACCCCTTCCATTTTGTGATCTTTCATCTCTTCAATTATT
CGTCTGAGGGCAAGGATCTGGGATGATGTCGATCGAGAGCTACGAAACCC
ATTTTGGTTTGGTCGAAGTACTTTATCAATTTTAGGACGCCGCCTATTTA
GAATCAAGCGATTATAGATTTTAGCCGAGACTTGACTGAGACTGATTCCG
CGATAGTTATCGGTTTTAGTTAAATCACCTTTCTTCGGAACTGGTACGAT
GGCAGACAATCCCCACTCAGGAGGTCGAGCGCCATCTAGAGTTGCATTGC
AAAAGGTAAGAAGAATTTCTTTACATTTAGGGAGCTTCCACAGTCCGAGT
GGAATACTATCGAGACCGGGTTCCttgttgtttttcatttgtttgatGGC
TGTTTCAATTTCTGTCATAGTGAAGTCTCCGGTAGAGATGTTTTCGTTGA
GTTCAAAAAGGATCAAAAAGTTCGTTTTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006566XLOC_006566Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011696-proteinTCONS_00011696-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011696-exon-sc0000131-1491911889:100041..101116TCONS_00011696-exon-sc0000131-1491911889:100041..101116Clytia hemisphaericaexon
TCONS_00011696-exon-sc0000131-1510915933:100041..101116TCONS_00011696-exon-sc0000131-1510915933:100041..101116Clytia hemisphaericaexon
TCONS_00011696-exon-sc0000131-1575043694:100041..101116TCONS_00011696-exon-sc0000131-1575043694:100041..101116Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000131supercontigsc0000131:100041..101116 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.606931	0.535649	0.834602	0.862838	0.369576	0.346465	0.315656	0.730328	0.676123	0.592536	0.905257	0.791411	2.6311	1.92676	2.51707	1.26809	2.61047	1.59516	0.955699	1.83344	1.13026	1.07146	0.339485	0.96395	1.55348	2.04211	0.969598	0.485552	1.86149	1.85319
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000477RT_dom
Blast
[Close]
BLAST of TCONS_00011696 vs. Swiss-Prot (Human)
Match: LORF2 (LINE-1 retrotransposable element ORF2 protein OS=Homo sapiens PE=1 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 4.298e-23
Identity = 93/309 (30.10%), Postives = 150/309 (48.54%), Query Frame = 1 
Query:  136 TMTEIETAIKQMKNNKEPGLDSIPLGLWKLPKCKEILLTFC-----NATLDGARPPEWGLSAIVPVPKKG-DLTKTDNYRGISLSQVSAKIYNRLILNRRRPKIDKVLRPNQNGFRSSRSTSSQILALRRIIEEMKDHKMEG-VVTFIDFRKAFDSIDQKRMFKILHAYGIPPKIVDAIRIMYENNSATVLTQEGETEFFKIETGVLQGDPLAPFLFIIVLDYALRKAI---KSSDGLTLFRQRSRRHPSIHXXXXXXXXXXXXXXESIKEAERVLHKVELATQSIGLFLNIQKNQILAYQLNKQPKLQ 1032
            T +EI   I  +   K PG D      ++  + KE L+ F      +   +G  P  +  ++I+ +PK G D TK +N+R ISL  + AKI N+++ NR +  I K++  +Q GF         I     +I+ +   K +  V+  ID  KAFD I Q  M K L+  GI    +  IR +Y+  +A ++    + E F ++TG  QG PL+P LF IVL+  L +AI   K   G+ L ++  +         L   D I  ++  I  A+ +L  +   ++  G  +N+QK+Q   Y  N+Q + Q
Sbjct:  454 TGSEIVAIINSLPTKKSPGPDGFTAEFYQ--RYKEELVPFLLKLFQSIEKEGILPNSFYEASIILIPKPGRDTTKKENFRPISLMNIDAKILNKILANRIQQHIKKLIHHDQVGFIPGMQGWFNIRKSINVIQHINRAKDKNHVIISIDAEKAFDKIQQPFMLKTLNKLGIDGMYLKIIRAIYDKPTANIILNGQKLEAFPLKTGTRQGCPLSPLLFNIVLE-VLARAIRQEKEIKGIQLGKEEVK-------LSLFADDMIVYLENPIVSAQNLLKLISNFSKVSGYKINVQKSQAFLYNNNRQTESQ 752
The following BLAST results are available for this feature:
BLAST of TCONS_00011696 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
LORF24.298e-2330.10LINE-1 retrotransposable element ORF2 protein OS=H... [more]
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