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Sequence
The following sequences are available for this feature:
polypeptide sequence >TCONS_00009925-protein ID=TCONS_00009925-protein|Name=TCONS_00009925-protein|organism=Clytia hemisphaerica|type=polypeptide|length=419bp
KRKSEAALTIIDIIITKCEFSNDFHVKHNQALILKDLQRFTDAIKILEET
LSSSKVDTINMRYVLGVKNNLASFYRNIGNHKKSLEMHEELFKKQSELYG
EYDEVTLITMCNLVSDYSNEGDHENAISLGERVLQSTNQAFGENNETTLI
TKFNLALQYSKIKKYSKAIELYTDVMNRDIHTLGENHEKTLNTKYSLADC
YRMQNDYIKAIELYTDVMNRRIHTLGDNHEKTLETKYFLADCYRMQNDYI
KAIELYTDVMNRRIHTLGENHEKTLKIKYWLANCYYGQNNYIKAIELYTD
VMNRRIHTLGENHEETLETKYSLADCYYGQNNYIKAIELYTDVMNRRIHT
LGENHEETLETKYWLAECYYGQNNYIKAIELYTDVMNRRIHTLGENHEKT
LEAKYSLADCYAMQNDYSN Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
This polypeptide derives from the following transcript feature(s):
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005515 |
protein binding |
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| IPR019734 | Tetratricopeptide repeat | SMART | SM00028 | tpr_5 | coord: 24..57
e-value: 200.0
score: 3.5
coord: 317..350
e-value: 22.0
score: 11.9
coord: 233..266
e-value: 30.0
score: 10.8
coord: 191..224
e-value: 35.0
score: 10.2
coord: 65..98
e-value: 130.0
score: 5.3
coord: 359..392
e-value: 100.0
score: 6.0
coord: 275..308
e-value: 70.0
score: 7.6
coord: 149..182
e-value: 18.0
score: 12.7 |
| None | No IPR available | GENE3D | 1.20.1250.10 | | coord: 75..132
e-value: 9.7E-9
score: 34.7 |
| None | No IPR available | GENE3D | 1.10.150.200 | | coord: 21..74
e-value: 0.0016
score: 17.8 |
| None | No IPR available | GENE3D | 1.10.150.160 | | coord: 278..297
e-value: 0.06
score: 12.9 |
| None | No IPR available | PFAM | PF13424 | TPR_12 | coord: 67..135
e-value: 3.2E-10
score: 40.1
coord: 359..417
e-value: 6.0E-10
score: 39.2
coord: 276..347
e-value: 3.1E-14
score: 52.9
coord: 191..263
e-value: 7.9E-15
score: 54.8 |
| IPR011991 | Winged helix-turn-helix DNA-binding domain | GENE3D | 1.10.10.10 | | coord: 218..277
e-value: 5.5E-16
score: 58.1
coord: 298..360
e-value: 2.5E-17
score: 62.5
coord: 133..192
e-value: 2.1E-13
score: 49.8 |
| IPR011990 | Tetratricopeptide-like helical domain | GENE3D | 1.25.40.10 | | coord: 361..419
e-value: 3.0E-6
score: 26.6 |
| IPR011990 | Tetratricopeptide-like helical domain | GENE3D | 1.25.40.10 | | coord: 193..217
e-value: 0.011
score: 15.5 |
| IPR011990 | Tetratricopeptide-like helical domain | SUPERFAMILY | 48452 | TPR-like | coord: 22..179 |
| IPR011990 | Tetratricopeptide-like helical domain | SUPERFAMILY | 48452 | TPR-like | coord: 165..384 |
| IPR013026 | Tetratricopeptide repeat-containing domain | PROSITE | PS50293 | TPR_REGION | coord: 149..392
score: 10.675 |
Blast
The following BLAST results are available for this feature:
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