TCONS_00009925 (transcript) - C. hemisphaerica

Overview
NameTCONS_00009925
Unique NameTCONS_00009925
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1809

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00009925 ID=TCONS_00009925|Name=TCONS_00009925|organism=Clytia hemisphaerica|type=transcript|length=1809bp
AAAACGAAAGTCTGAAGCTGCTTTGACAATCATTGACATAATTATTACAA
AATGTGAATTTTCAAACGATTTCCACGTTAAACATAACCAAGCattaatt
ttaaaagatttgcaAAGGTTCACAGACGCTATCAAAATACTAGAAGAAAC
GTTATCATCGTCCAAAGTGGACACCATAAATATGCGATACGTTCTAGGGG
TGAAAAACAACCTAGCATCATTTTATCGAAATATTGGCAACCACAAGAAA
AGCTTGGAGATGCATGAAgagctttttaaaaaacaatctgaaCTTTATGG
TGAATATGATGAAGTAACACTAATTACTATGTGTAACCTGGTGAGTGATT
ATTCAAACGAGGGTGATCATGAAAACGCCATTTCATTGGGTGAAAGAGTA
CTGCAGAGTACGAATCAAGCTTTTggtgaaaacaatgaaactacaCTAAT
AACAAAATTCAACTTAGCCCttcaatattcaaaaatcaaaaaatattcga
aAGCGATCGAGTTGTATACAGATGTTATGAATAGGGATATCCATACGTTG
GGTGAAAACCACGAGAAAACATTAAACACAAAATATTCTCTTGCCGATTG
CTACAGGATGCAGAACGATTACATCAAAGCAATCGAGTTATATACAGATG
TTATGAATAGGAGAATCCATACATTGGGCGATAACCACgagaaaacAtta
gaaacaaaatattttcttgccGACTGCTACAGGATGCAGAACGATTACAT
CAAAGCGATCGAGTTATATACAGATGTTATGAATAGGAGAATCCATACTT
TGGGTGAAAACCAtgagaaaacattaaaaataaaatattggcTTGCCAAT
TGCTACTATGGGCAGAACAATTACATCAAAGCGATCGAGTTATATACAGA
TGTTATGAATAGGAGAATCCATACTTTGGGTGAAAACCACGAGGAAACAT
TAGAAACAAAATATTCTCTTGCCGATTGCTACTATGGGCAGAACAATTAC
ATAAAAGCAATCGAGTTATATACAGATGTTATGAATAGGAGAATCCATAC
TTTGGGTGAAAACCACGAGGAAACATTAGAAACAAAATATTGGCTTGCCG
AGTGCTACTATGGGCAGAACAATTACATCAAAGCGATCGAGCTATATACA
GATGTTATGAATAGGAGAATCCATACTTTGGGTGAAAACCATGAGAAAAC
ATTAGAAGCAAAATATTCGCTTGCCGATTGCTATGCAATGCAGAACGATT
ACAGCAATTAGCTGGGATTGATATTCTTATATTTTCTATGGATGAGGAtc
tcaattcttttgttttcaagacagaaaattcagtggcgatggaaaaaaat
agcataatattttgcagggAGGATTGGCTTATTGGATCATTTTCAGTCAG
gataaaaattggagtataatttaccactggggacgatattttggccaatt
tttccagtggggacgggtcccagtgggtctgtgagaaggttCCTTCCGTT
ACTTAAGTGTGTTAATTTCATCGGGAATTAAATCAGGGGGTTTAGCGGTT
CTAGGCTAAATACCCAAAATTAAGATCGACCCTACCGCCAAATTACATAC
CCGATTGAATATCAAGTAAAATTGTCTTGGGTCGGGATAGAGAGCACTAG
GCCTTAAGTCTTCGCTAATCCACCGGAAATTACAAAATCCattaaccgcc
aaattaaatataCCCGCCTAAGGAAGCCTTTCGGCTGAACACCAAATCAA
AAACACGCCAACATTAATACACTTTTTAAGGtagtttttaaatataaaat
gcATTTATA
Run BLAST on NCBI

protein sequence of TCONS_00009925-protein

>TCONS_00009925-protein ID=TCONS_00009925-protein|Name=TCONS_00009925-protein|organism=Clytia hemisphaerica|type=polypeptide|length=419bp
KRKSEAALTIIDIIITKCEFSNDFHVKHNQALILKDLQRFTDAIKILEET
LSSSKVDTINMRYVLGVKNNLASFYRNIGNHKKSLEMHEELFKKQSELYG
EYDEVTLITMCNLVSDYSNEGDHENAISLGERVLQSTNQAFGENNETTLI
TKFNLALQYSKIKKYSKAIELYTDVMNRDIHTLGENHEKTLNTKYSLADC
YRMQNDYIKAIELYTDVMNRRIHTLGDNHEKTLETKYFLADCYRMQNDYI
KAIELYTDVMNRRIHTLGENHEKTLKIKYWLANCYYGQNNYIKAIELYTD
VMNRRIHTLGENHEETLETKYSLADCYYGQNNYIKAIELYTDVMNRRIHT
LGENHEETLETKYWLAECYYGQNNYIKAIELYTDVMNRRIHTLGENHEKT
LEAKYSLADCYAMQNDYSN
Run BLAST on NCBI

transcript from alignment at sc0000100:261566..263626-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00009925 ID=TCONS_00009925|Name=TCONS_00009925|organism=Clytia hemisphaerica|type=transcript|length=2061bp|location=Sequence derived from alignment at sc0000100:261566..263626- (Clytia hemisphaerica)
AAAACGAAAGTCTGAAGCTGCTTTGACAATCATTGACATAATTATTACAA
AATGTGAATTTTCAAACGATTTCCACGTTAAACATAACCAAGCATTAATT
TTAAAAGATTTGCAAAGGTTCACAGACGCTATCAAAATACTAGAAGAAAC
GTTATCATCGTCCAAAGTGGACACCATAAATATGCGATACGTTCTAGGGG
TGAAAAACAACCTAGCATCATTTTATCGAAATATTGGCAACCACAAGAAA
AGCTTGGAGATGCATGAAGAGCTTTTTAAAAAACAATCTGAACTTTATGG
TGAATATGATGAAGTAACACTAATTACTATGTGTAACCTGGTGAGTGATT
ATTCAAACGAGGGTGATCATGAAAACGCCATTTCATTGGGTGAAAGAGTA
CTGCAGAGTACGAATCAAGCTTTTGGTGAAAACAATGAAACTACACTAAT
AACAAAATTCAACTTAGCCCTTCAATATTCAAAAATCAAAAAATATTCGA
AAGCGATCGAGTTGTATACAGATGTTATGAATAGGGATATCCATACGTTG
GGTGAAAACCACGAGAAAACATTAAACACAAAATATTCTCTTGCCGATTG
CTACAGGATGCAGAACGATTACATCAAAGCAATCGAGTTATATACAGATG
TTATGAATAGGAGAATCCATACATTGGGCGATAACCACGAGAAAACATTA
AAAACAAAATATTTTCTTGCCGAGTGCTACAGGATGCAGAACGATTACGT
CAAAGCAATCGAGTTATATACAGATGTTATGAATAGGAGAATCCATATAT
TGGGTGATAACCACGAGGAAACATTAAAAACAAAATATTGGCTTGCCAAT
TGCTACTATGGGCAGAACAATTACATCAAAGCGATCGAGTTATGTACAGA
TGTTATGAATAGGAGAATCCATACTTTGGGTGAAAACCACAAGGAAACAT
TAGAAACAAAATATTTTCTTGCCGACTGCTACAGGATGCAGAACGATTAC
ATCAAAGCGATCGAGTTATATACAGATGTTATGAATAGGAGAATCCATAC
TTTGGGTGAAAACCATGAGAAAACATTAAAAATAAAATATTGGCTTGCCA
ATTGCTACTATGGGCAGAACAATTACATCAAAGCGATCGAGTTATATACA
GATGTTATGAATAGGAGAATCCATACTTTGGGTGAAAACCACGAGGAAAC
ATTAGAAACAAAATATTCTCTTGCCGATTGCTACTATGGGCAGAACAATT
ACATAAAAGCAATCGAGTTATATACAGATGTTATGAATAGGAGAATCCAT
ACTTTGGGTGAAAACCACGAGGAAACATTAGAAACAAAATATTGGCTTGC
CGAGTGCTACTATGGGCAGAACAATTACATCAAAGCGATCGAGCTATATA
CAGATGTTATGAATAGGAGAATCCATACTTTGGGTGAAAACCATGAGAAA
ACATTAGAAGCAAAATATTCGCTTGCCGATTGCTATGCAATGCAGAACGA
TTACAGCAATTAGCTGGGATTGATATTCTTATATTTTCTATGGATGAGGA
TCTCAATTCTTTTGTTTTCAAGACAGAAAATTCAGTGGCGATGGAAAAAA
ATAGCATAATATTTTGCAGGGAGGATTGGCTTATTGGATCATTTTCAGTC
AGGATAAAAATTGGAGTATAATTTACCACTGGGGACGATATTTTGGCCAA
TTTTTCCAGTGGGGACGGGTCCCAGTGGGTCTGTGAGAAGGTTCCTTCCG
TTACTTAAGTGTGTTAATTTCATCGGGAATTAAATCAGGGGGTTTAGCGG
TTCTAGGCTAAATACCCAAAATTAAGATCGACCCTACCGCCAAATTACAT
ACCCGATTGAATATCAAGTAAAATTGTCTTGGGTCGGGATAGAGAGCACT
AGGCCTTAAGTCTTCGCTAATCCACCGGAAATTACAAAATCCATTAACCG
CCAAATTAAATATACCCGCCTAAGGAAGCCTTTCGGCTGAACACCAAATC
AAAAACACGCCAACATTAATACACTTTTTAAGGTAGTTTTTAAATATAAA
ATGCATTTATA

Coding sequence (CDS) from alignment at sc0000100:261566..263626-

>TCONS_00009925 ID=TCONS_00009925|Name=TCONS_00009925|organism=Clytia hemisphaerica|type=CDS|length=2520bp|location=Sequence derived from alignment at sc0000100:261566..263626- (Clytia hemisphaerica)
ATTAGAAACAAAATATTTTCTTGCCGACTGCTACAGGATGCAGAACGATT
ACATCAAAGCGATCGAGTTATATACAGATGTTATGAATAGGAGAATCCAT
ACTTTGGGTGAAAACCATGAGAAAACATTAAAAATAAAATATTGGCTTGC
CAATTGCTACTATGGGCAGAACAATTACATCAAAGCGATCGAGTTATATA
CAGATGTTATGAATAGGAGAATCCATACTTTGGGTGAAAACCACGAGGAA
ACATTAGAAACAAAATATTCTCTTGCCGATTGCTACTATGGGCAGAACAA
TTACATAAAAGCAATCGAGTTATATACAGATGTTATGAATAGGAGAATCC
ATACTTTGGGTGAAAACCACGAGGAAACATTAGAAACAAAATATTGGCTT
GCCGAGTGCTACTATGGGCAGAACAATTACATCAAAGCGATCGAGCTATA
TACAGATGTTATGAATAGGAGAATCCATACTTTGGGTGAAAACCATGAGA
AAACATTAGAAGCAAAATATTCGCTTGCCGATTGCTATGCAATGCAGAAC
GATTACAGCAATTAGAAACGAAAGTCTGAAGCTGCTTTGACAATCATTGA
CATAATTATTACAAAATGTGAATTTTCAAACGATTTCCACGTTAAACATA
ACCAAGCATTAATTTTAAAAGATTTGCAAAGGTTCACAGACGCTATCAAA
ATACTAGAAGAAACGTTATCATCGTCCAAAGTGGACACCATAAATATGCG
ATACGTTCTAGGGGTGAAAAACAACCTAGCATCATTTTATCGAAATATTG
GCAACCACAAGAAAAGCTTGGAGATGCATGAAGAGCTTTTTAAAAAACAA
TCTGAACTTTATGGTGAATATGATGAAGTAACACTAATTACTATGTGTAA
CCTGGTGAGTGATTATTCAAACGAGGGTGATCATGAAAACGCCATTTCAT
TGGGTGAAAGAGTACTGCAGAGTACGAATCAAGCTTTTGGTGAAAACAAT
GAAACTACACTAATAACAAAATTCAACTTAGCCCTTCAATATTCAAAAAT
CAAAAAATATTCGAAAGCGATCGAGTTGTATACAGATGTTATGAATAGGG
ATATCCATACGTTGGGTGAAAACCACGAGAAAACATTAAACACAAAATAT
TCTCTTGCCGATTGCTACAGGATGCAGAACGATTACATCAAAGCAATCGA
GTTATATACAGATGTTATGAATAGGAGAATCCATACATTGGGCGATAACC
ACGAGAAAACATTAGAAACAAAATATTTTCTTGCCGACTGCTACAGGATG
CAGAACGATTACATCAAAGCGATCGAGTTATATACAGATGTTATGAATAG
GAGAATCCATACTTTGGGTGAAAACCATGAGAAAACATTAAAAATAAAAT
ATTGGCTTGCCAATTGCTACTATGGGCAGAACAATTACATCAAAGCGATC
GAGTTATATACAGATGTTATGAATAGGAGAATCCATACTTTGGGTGAAAA
CCACGAGGAAACATTAGAAACAAAATATTCTCTTGCCGATTGCTACTATG
GGCAGAACAATTACATAAAAGCAATCGAGTTATATACAGATGTTATGAAT
AGGAGAATCCATACTTTGGGTGAAAACCACGAGGAAACATTAGAAACAAA
ATATTGGCTTGCCGAGTGCTACTATGGGCAGAACAATTACATCAAAGCGA
TCGAGCTATATACAGATGTTATGAATAGGAGAATCCATACTTTGGGTGAA
AACCATGAGAAAACATTAGAAGCAAAATATTCGCTTGCCGATTGCTATGC
AATGCAGAACGATTACAGCAATTAGAAACGAAAGTCTGAAGCTGCTTTGA
CAATCATTGACATAATTATTACAAAATGTGAATTTTCAAACGATTTCCAC
GTTAAACATAACCAAGCATTAATTTTAAAAGATTTGCAAAGGTTCACAGA
CGCTATCAAAATACTAGAAGAAACGTTATCATCGTCCAAAGTGGACACCA
TAAATATGCGATACGTTCTAGGGGTGAAAAACAACCTAGCATCATTTTAT
CGAAATATTGGCAACCACAAGAAAAGCTTGGAGATGCATGAAGAGCTTTT
TAAAAAACAATCTGAACTTTATGGTGAATATGATGAAGTAACACTAATTA
CTATGTGTAACCTGGTGAGTGATTATTCAAACGAGGGTGATCATGAAAAC
GCCATTTCATTGGGTGAAAGAGTACTGCAGAGTACGAATCAAGCTTTTGG
TGAAAACAATGAAACTACACTAATAACAAAATTCAACTTAGCCCTTCAAT
ATTCAAAAATCAAAAAATATTCGAAAGCGATCGAGTTGTATACAGATGTT
ATGAATAGGGATATCCATACGTTGGGTGAAAACCACGAGAAAACATTAAA
CACAAAATATTCTCTTGCCGATTGCTACAGGATGCAGAACGATTACATCA
AAGCAATCGAGTTATATACAGATGTTATGAATAGGAGAATCCATACATTG
GGCGATAACCACGAGAAAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005567XLOC_005567Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009925-proteinTCONS_00009925-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009925-exon-sc0000100-1575043694:262931..263626TCONS_00009925-exon-sc0000100-1575043694:262931..263626Clytia hemisphaericaexon
TCONS_00009925-exon-sc0000100-1575043694:261566..262678TCONS_00009925-exon-sc0000100-1575043694:261566..262678Clytia hemisphaericaexon
TCONS_00009925-exon-sc0000100-1510915933:262931..263626TCONS_00009925-exon-sc0000100-1510915933:262931..263626Clytia hemisphaericaexon
TCONS_00009925-exon-sc0000100-1510915933:261566..262678TCONS_00009925-exon-sc0000100-1510915933:261566..262678Clytia hemisphaericaexon
TCONS_00009925-exon-sc0000100-1491911889:262931..263626TCONS_00009925-exon-sc0000100-1491911889:262931..263626Clytia hemisphaericaexon
TCONS_00009925-exon-sc0000100-1491911889:261566..262678TCONS_00009925-exon-sc0000100-1491911889:261566..262678Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000100supercontigsc0000100:261566..263626 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0216227	0.0792785	0.0491507	1.40319	1.08424	2.25379	2.77538	0.641582	0.840999	1.06713	1.02216	2.64365	1.71399	1.73988	3.61284	1.00506	0.919571	0.907881	2.4681	1.22721	1.6371	0.198312	0.559319	2.04532	1.96166	0.241092	0.155208	0.65683	0.793069
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR019734TPR_repeat
IPR011991WHTH_DNA-bd_dom
IPR011990TPR-like_helical_dom
IPR013026TPR-contain_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00009925 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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