TCONS_00009644-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00009644-protein
Unique NameTCONS_00009644-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length502

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00009644-protein ID=TCONS_00009644-protein|Name=TCONS_00009644-protein|organism=Clytia hemisphaerica|type=polypeptide|length=502bp
METVIEQQRRCHEERERLEGGMTQELLLKKNNLKEQINSDHRVHFLLDRY
MEVTDKLKKYYTDDDSLRQEEINSIAGPNEFAEFYGRLRTIKQYHRKYPN
EVAEPMQMEFLRLKDLREKPGEEQEVLVEFSDEEGFGKYLDLHEAYNMYI
NLKGIEHIDYLTFLMSFDRLFEIAKEKKNHEYKKYLNKVLDYLYSFLQRT
KPLLNLERELKEADEDFQSKYEHGNFMGWPKETGSALAHSGAHLDLSAFS
SPEELMSLGLDRLKSALQALSMKCGGTLEERAKRLFGTKGVSLEDLKSTQ
GGKKGRGKSKGIDNAKRQRELAALESQVYRLVELVGEERQATRENVERKQ
ARTANELEDDEEENALDEESDDEEEQTLYNPKKLPLGWDGKPIPYWLYKL
HGLNLYYPCEICGNQKYRGPKAFQRHFSEWRHAHGMRVLNIPNTAHFANV
TKIEDALSLWEKLKEEKAKERFQPDADEEFEDSVGNVVNKKTFEDLSRQG
LL
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_005380XLOC_005380Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00009644TCONS_00009644Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR021966SF3a60_bindingd
IPR031774SF3A3_dom
IPR024598DUF3449
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 203..223
NoneNo IPR availableCOILSCoilCoilcoord: 343..363
NoneNo IPR availablePFAMPF13297Telomere_Sde2_2coord: 244..297
e-value: 9.0E-23
score: 79.6
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 340..378
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 296..315
IPR021966Splicing factor SF3a60 binding domainPFAMPF12108SF3a60_bindingdcoord: 74..100
e-value: 4.3E-13
score: 48.8
IPR031774SF3A3 domainPFAMPF16837SF3A3coord: 129..206
e-value: 2.1E-22
score: 79.3
IPR024598Domain of unknown function DUF3449PFAMPF11931DUF3449coord: 325..501
e-value: 9.7E-75
score: 250.3

Blast
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BLAST of TCONS_00009644-protein vs. Swiss-Prot (Human)
Match: SF3A3 (Splicing factor 3A subunit 3 OS=Homo sapiens GN=SF3A3 PE=1 SV=1)

HSP 1 Score: 630.943 bits (1626), Expect = 0.000e+0
Identity = 316/502 (62.95%), Postives = 389/502 (77.49%), Query Frame = 0 
Query:    1 METVIEQQRRCHEERERLEGGMTQELLLKKNNLKEQINSDHRVHFLLDRYMEVTDKLKKYYTDDDSLRQEEINSIAGPNEFAEFYGRLRTIKQYHRKYPNEVAEPMQMEFLRLKDLREKPGEEQEVLVEFSDEEGFGKYLDLHEAYNMYINLKGIEHIDYLTFLMSFDRLFEIAKEKKNHEYKKYLNKVLDYLYSFLQRTKPLLNLERELKEADEDFQSKYEHGNFMGWPKETGSALAHSGAHLDLSAFSSPEELMSLGLDRLKSALQALSMKCGGTLEERAKRLFGTKGVSLEDLKSTQGGKKGRGKSKGIDNAKRQRELAALESQVYRLVELVGEERQATRENVERKQARTANELEDDEEENALDEESDDEEEQTLYNPKKLPLGWDGKPIPYWLYKLHGLNLYYPCEICGNQKYRGPKAFQRHFSEWRHAHGMRVLNIPNTAHFANVTKIEDALSLWEKLKEEKAKERFQPDADEEFEDSVGNVVNKKTFEDLSRQGLL 502
            MET++EQQRR HEE+ERL   M +E+L KK+ L++QINSDHR   + DRYMEV+  L+  Y D D LR+EE+N+I+GPNEFAEFY RL+ IK++HRK+PNE+  PM +EF  L   RE P EE + LVEF+DEEG+G+YLDLH+ Y  YINLK  E +DY+T+L  FD+LF+I KE+KN EYK+YL  +L+YL  +  R KPL +      +   +F+ K+E+G F GWPKET SAL H+GAHLDLSAFSS EEL SLGLDRLKSAL AL +KCGGTLEERA+RLF TKG SLE L ++   K  + K    D  +R +++A LE+Q+Y  VE++GE+R  T ENV+RKQART  E E++EEE   + ES+DEE + +YNPK LPLGWDGKPIPYWLYKLHGLN+ Y CEICGN  YRGPKAFQRHF+EWRHAHGMR L IPNTAHFANVT+IEDA+SLW KLK +KA ER+QPD +EE+EDS GNVVNKKT+EDL RQGLL
Sbjct:    1 METILEQQRRYHEEKERLMDVMAKEMLTKKSTLRDQINSDHRTRAMQDRYMEVSGNLRDLYDDKDGLRKEELNAISGPNEFAEFYNRLKQIKEFHRKHPNEICVPMSVEFEELLKARENPSEEAQNLVEFTDEEGYGRYLDLHDCYLKYINLKASEKLDYITYLSIFDQLFDIPKERKNAEYKRYLEMLLEYLQDYTDRVKPLQDQNELFGKIQAEFEKKWENGTFPGWPKETSSALTHAGAHLDLSAFSSWEELASLGLDRLKSALLALGLKCGGTLEERAQRLFSTKGKSLESLDTSLFAKNPKSKGTKRD-TERNKDIAFLEAQIYEYVEILGEQRHLTHENVQRKQARTGEEREEEEEEQISESESEDEENEIIYNPKNLPLGWDGKPIPYWLYKLHGLNINYNCEICGNYTYRGPKAFQRHFAEWRHAHGMRCLGIPNTAHFANVTQIEDAVSLWAKLKLQKASERWQPDTEEEYEDSSGNVVNKKTYEDLKRQGLL 501
The following BLAST results are available for this feature:
BLAST of TCONS_00009644-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SF3A30.000e+062.95Splicing factor 3A subunit 3 OS=Homo sapiens GN=SF... [more]
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