XLOC_042532 (gene) - C. hemisphaerica

Overview
NameXLOC_042532
Unique NameXLOC_042532
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_48:443694..453033+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_042532 ID=XLOC_042532|Name=XLOC_042532|organism=Clytia hemisphaerica|type=gene|length=9340bp|location=Sequence derived from alignment at scaffold_48:443694..453033+ (Clytia hemisphaerica)
TTTGGAAACTATTTGCAAACGATCAAAGGTAAGAATCTTTTGAAATAATT GATTATTCCTCCTACATAACCGCCCCCGCCCCCAACTTTCTGTTTCGAAA ATGAAATACATAGATGAAGGTTAGAAAAAGATTCCGATCGAccttaaatt ttttataaaactttgTAAAATGAAAATTGGGTTAATTTCGCAGTACAGTG GATACCTCTTAAACACGCATAGTTTTAAACTCTCAAAGCTGCTTTTTGTT ATCTCAGAACCATCAAAGATAATTTGTCAtgataatttttaaactttcat aAATACTTACAATAAAAGTCATaacatttgagaaaaaagagaaaaccccA CGAAATCTTTaacaatggtccaatagggctcagcaTATAGCGTGGAAGTC TATATAAACCTCTCCCGAATTGTGATATCTGAATGAATTTATCAAtttag cccaaaagcgactttctcacccgaactttaaattgctaaaaacgaagaat taaccaaaattttcaatatattttgaccaagaTTGTAGTTTTACTATCTT CAATTACattaaaatttcctaaaatgcaatttttgaaaagttatatCGAA AATCCCTTCCAAAATTAGGTCCTCTCGTCTCAgaagattttcaaaatcaa aaaaaatataggTCTTTTCGTCTCAGAAGATTTTTTCAATCacattgaaa atttcttcaaaaaataggTTTATTCGtcttagaaaattttcaaaacttct tCAAAAAGTTAGGTCCTTTCGcctcaaaagattttcaaaagaatatcgaa aattccttcaaaaaataGGTCATGCTTTCGCCTCAGgagattttcaaaat tacgTCGAAAATCCCTTGAAAAAATTAAGTGTTTCGGTCTCAGAGATAGC GCTACTGTATTAAAGGATACACTtatacttttaaaatattttttccataa ttCCCAAATCATTCATTACCTATATCCTCATAAATTTACTAGCCGGCGTA TTTTTGgcataacattttcaaatactTAGATTTTTCTCATGAGATTccta gcatcatgaaaaacattccttAGTTTGAGTAAGTTGTGAGAGTAAAGACA CTTTGCGTGGTACTTAGGCTTTTATTTCGGGTTTTATTTCAGTTTTCACG TACATTGTTGTTGGAAAAATAATACTTGAAAAAAAGATAGCAATCACCGT TCTAAATTGggttattccagaaaaaattgtaTACCCTACAATCAAGGttg taatatttgaaaaaatcgactttctcgacggaactttaaatcttgaaaaa cgttaaaataactggaattctcattatattacattatattggcatttttg gatttccGTAAATGGGACCTtctgaaaaagtgaaatatttcaccaaaaac ttatTTTGACCCAGTGAAAATGCAATGGGAATGCAGCAAAGGGttatttt ctacatttttggggttttctggtaattttagaccccccacAGAGCAGAAG Tcggcattttgaattttcaaagacaatcaaggtcgtaatatttgagaaaa aagagaaatccaccgggaagttttggaaccacaatcgatttgtaagtgct ttaaagtaggttcgaaaggtagagttttaactctaacTCTTGACTTAAAA CTTAGGACCTTatgatctgaggatccaaaagttcaaaaatagtccaataa ggctcagaatatagcctggaagtctgctaacccctcccaaattgaaatat tcgattaaataaaagagatggcccaaaatcgactttctcgccggaacttt aaatcttgaaaaacgctaaaataaccggaattctcattatATTTCAACCT TTATTGTAGGTTAAGaaggtctttttttaaaaatgtgacCTCGCctttaa accttttttcttattgttgattCAAAGTTGATCGAGAATCGATCATCAAT GAATCGATCATCTTTATCTTGACTGTTTCAAAACCTACTTAGCTTTTTCT AGGTTTTGCCGTCTGGCCCTAATTGAGGTATTCTGAAATTAGTCAGTAGC AGATATTAAGCCTTTCACTTAGGGTGGGCTTTAGAAGAATCAACGAGTGA GCTAGATTCGTCTTGCCAGCGCATACTTTATAAAAACGTCCAATGTTGAC TATGAAAACACGAACATTTCCTAACCTTCTCAGGCTTCAGAAAAGAAAAC ACTGCTACTTTCATTCAAACTTCACGCTATATTTTACTGCCGATTGATTG GTTGAATACGAGCTGATAAAAGGCGTATAGAAAGATACATTGTATGCATC AACTTCAGCACCGAGGGCTATAAATCCACATGCCTTTAACCTTTTGTAAA TCAAAAGTTACCAGGTGCCCTGACCAGCGCCACATCCTCGTACCCCTATT TGCCCAAGTCCCCTGGGGATATGATGTCTCGCcgtttttttaatgtttgt CAAAACATTCGTCACTTATCTAAAATGATTACCACTCTTccttaagcaaa aaaaaagaaattacggaaaaatacagaaaaaaaactttgaactcaaagaa ataaaataaaatgaagaatgAAGAAAAAACTAAACAATCATAATTcaagt tgaaaatcaaaaaaaattaaaataagcgTATTTTTCGCAGTTATTGAGCC CTCGAAATCCCATTAGTATGAGACAATCGATAGAAAAAGTACGAACTTGA AGTGGTAATGGAATCcgaataaaatatttcaaaactcgtTCCCTGCTTTC GTAAGATTTAAAAGTATTATGTATTTTTTCGATAATGCATAATGATACAC ATTGCTTAGTAGAGgccaaattaattttcaaatattaacaTATTCAAAAT ATTACATGTCATTCAAGAAAGTCTGTAGTGCAAAAGACATTGATTAGGTC AGAAAATGAAGCACAAAAAAGATCAACATTTTCAAGacattgaattttct ttttttttaatttaatattttaattctaaatttcccaaatttgaattaaa gaaacaattaaagtggtctctcaaaaaataaaaaatgcggGGTCAAATGG GAGGAAAGGAGAAATTATGCAATTACTTTGACATGTGGAATAAATCACGT CCACAGCCATTACCCACAGGATAATTAATCCAAGGCTTACATTCTCCATT TCgaaattgaaatattattttccgtttatctttgaaagatatttaaaCTT TACGAGATATTTTGTAGATTGGATATTTTTTTACAAGCTATACaaaattg tattgaaaaaatttttatgaaaagaaaaaaaacgtttttccatacctaaa aaatgaattaatttcttacaaaataaatGAACTCGCAATacaagagattt tttttggcaactcagtataccctaaagaacatctgtgccaattttcagct tgataGCAATTTTGTCCAGGTCTCAGGCTAATTCTACCTGACAATAAGGC AACAATTGTGGCAGTAAaattgatatttcaaaaaaaacaaaatcaagagg CAAATAGATTGGATTcacaaacaaataaaaatgaaaacccTCTGTGGCAA gtttgatgaaaaaagtttgtccaTGGATCTGAAATTTAATCGATGACTAG TTCTAACATAATTTCGCataaattttttacattttgtcaattgatgaaaa aaagttgaatgatgGGGAGAAGGAATTGAGACATTTTGGGAAGGGTTTGT GGGTGTGATTGTTGTCTGTTGGGAAGTGGAAATGTAGGATTCAAAGTGTT GTCGATATTGCAATTCCTGCATCCAATGGCAATCATATTTTCATATTGTA TTTTCAATATTCTGGCACGCCTTAAAGGTGTATATTTTTGATTCATTGGT AAAGTTATTATATTCGTGGTTCCAATTGGACAGAATGTTTATTACCTTTA TTACCTGGTGAGTACGAATACGGCGTTATTTATTCAGATTGAAAAAGTTG GTAATGAAGATCTGACATTGTGAAGAATTCAATGATCAATTATCTAGAAA CAACATTTACATATCAATTGCAATGTTGTTTCAAGCACTGTTATTATATT ATAATTTCATTTTAGATTCAATAAAGAAATAGGTACATcatttcaaagat attttttcCTTACTTCTGGAAGAAATACCATATACAAATTTATAAGCAAT TCATTGGACAACATTCTTTATTCCCTGCAAACTCACTCACATCCCCATTT TTTACtaagatgaatttttttcgtatttaaaaataaataaatttgcagtt attcttcaaaattgaataggtttaaattttcttaattttcatgaaaatat tcATCAACTTTcttaattttcataaaaatattgatcaatttaaatgtgtt tttcttgtatgtaacaatgtgaaaaataacttttttatcgatgatttgaa attgaaatccaAAATGTTTTTCCGATAATTTAAATTTTGGCTTTCTTTTC GTTAAACGGAGAAATTGACcggttttatttttgaaaagctgataaaatta tcaTTCCAACGGTATTTAGAAACCTTAATGatcaaataataatttttcta GGTTGACCCTAAATTTTACAGGACTACATGGCTGGCAAAAAAAACTATTT GATTCCCATCCGaaagttttgaataaataatctttaatttctacatcaaa tattttctgtctaatctgctattttttgtgtCTTTCTAAATCTTAAATCT AATACGCAAGCGTCAGATTTTGTTATTTCCTAATAGATGCCCTAACTTGA ATCAAACCTACCAATTCTAAATTTaagtctttaaaaaagaatCTACAATA CAGCTTTGTCTGAAGATTCTGCCTGTGTAAAGCATGCAAAATAACATTTA TTTGTATAAGTtagttttttaacttttcgacATCCATAAACAAGTCTGAA GAATTTGTTATCAATTTACATTAACGTTGATAAATTTGACAAACTGACTT TTTTCCGCCATTATTGATAGTGACTCACTATACGCCTCTCAAGCTCTCCA TTTTGTTTTCGGTTTTATTGTTATTGTATTCAAAATGGCAGGATTTCAGT TAAGGCCTCCTTCACCTTAATGTCGTATCCTCCCGCGGAAATAAAACGCA TCGAgcacaaaacaaataaaatttggaataaTATTTTCTCTTGAATTTCA TATTTACTGTTTTACCACGATTTGTAAATCTCCAAAACTGGTGAggtaat tttcttaaatttagaATATAGAGcctgtttaaaaaatattcgtTGAAAAA TAAGGTGAATGTTGCGAATGCAAAATCGTTAGATAATTTCCTTTTTTATG taataaatgtaatttttaGTGTGGAAAAAGTTAAAGGACATGCAGGAACC ACTAATAGGGCCACATTGGTGATCAGCACGTTTCTTGGCGTAAATCACTT GCTTGAGGATGCTCTCACTtccccaaaaaaatttaaaacgctAGAATAAT AATAATCAAACGGCTTTTTATGATATTTATCAACATATTTCTCGACAAAG TTAAGTAACTATTTTTCTAGTTTCTGAACATACTAAAAGTCCTGAGAAAG CTTGTTTGGAAAACTactaaaactatgaaaatatgAACGCTATGAATCCC TAAAACGTCTCCATAGAACCATAGTTTTAATAAACTGCAACGGTTTCAAC TTAAAGGAAAATTCGAAGCTGGGACAGAAAATTGGAAATATCGTCTAACT TGATTTAACAACGTACTTTCATTGTTGTCAAAAATATAGTCATCCGAACT TCAATATGAAATTGACTGAAGAATATTTTAATCAGTGATATAGGGGTAAA GTAAATAATCCACAAGGAATACTCAAGGCTGATACCTCGAAAAAAGGGGG TCAAAAGATGATTGTGAACGATGTATAATCTGTAGGTAAAACGAATTTAC TACGAATAAAATTTAGTTCGTTGATtatgaatttcaagattttcaatacT GGACATTATTGGGTTACAGAAAAAACCTCAATTGTGTATACCCATAGTGA AAACGGTCAACCTGTAATGGAATTTAAAAGCtggaaaaattgtgaaaatc taGTTGTTTGTTTTACCGGGAAAAGACTGGTCGTTAAGGCGATTTGATAT CTTTTAATAGGGGATAGTAAACCGAAAATGGAAGAAACGAGTCTAAATAC CTTTTGTGAAATAATATTTGGTATATTTCTCTTAGAGATCGAATGTTAGT TAGGTCGGACTTACCAAATAAATAAGGGGAGTTTCAATTTTCAGCCCATC GATGGAATCTGATTTAATCGAATTCAATTAACATGAAGGAATGACCTATC TTTGCATTAATGATAGTCATCAGCTGAATGAGGGTGTAGGCAGAAAATTA AGCAAAGGTATTTACCCAAATATCTTACTAAAAACAGGGTAGGcgttaaa ataaataaaatgaggGGAGCAGTAAACAGACTCATTCCCAGCCTACGTGC TGCGAGAACAACAACATTTCATAATCGAACGCCAAAAGTACAAACGCTTT GTGGCTAGGATGACAATTAACTGTGGAGGATGGTCTTGTCTGACGTCATA TCTCTTAaaatttaagtaaaaaaaattcgCGACGCTTTACATCATTAAAC CCTTTAATGTCAAAAAAAACGGCTTATGGAAGACCAAATTTATTATGATT AATAACCCAATTTTTAACATGTTAATTTTGCGAGAATTACATAGTTTTCT ATGGCTAAAAATAGAGTATAATATCGGTAAAATGCAACTGAAAAGTATTT ATTGGCAAATCTACGTAAACGAAAATATACGATGATTAGAAAGTTCAAAC TTAGGTCTTTTAGAAAGTAAACTAAGCGAAAAACTGAGTAACTTGAATTG GGAAAGAAAATACTCTAAggacaaattttacaaaatttttaacCAATGGA GACAGTGACGAAAAGAGCTTGAGTGATTAGAAACCgaaacttttaaagaa tattttaactGCCAAGTAATATTTCAAGATAATCGTACTGTCTGGAATAA ATTAATAGTTTATTGTTTATACGATGCATAATTAGTGACAAACAATTAGA CTGCATATTAATTTATTAGACTTGATGAATTCCGATTGAGAAAGAGAGCA GTTATTAATTAAATTTGACATCTCGTCATTGTTGTTGTCTATAAAACTTA GTGTACAGACACTTCTTGTATACCATTCGACTAATTAACACGGTCCGTAC ACCACACtgtaaacaaaataaacaatttaactttgagctcaaatttttaa aacactATGATTAAAGTCGAACCGTGTATTCGGCAGACTTTCCAACACGT AAGTATTCATGCATTTTGTTTGAATTAAGGTCATACAAATTTCTATGTTA TGCAGCTTACAGCCATCAGCACATTGGAAACAATGCTACAAAATATTTGA ACCACCTTTTGCTTACTCGTTCATTTACAGGTGGATTTTTCGACATTCAG AATGGAAAACTACGCTGCAACAGCCGGTGGAGGTTTGAGTTTGCCATCCA CCACCTCATCATTCAATGAACAACTTCACACATATGCACCTGTCATATCC TCTACTGCACCTTCAACAACCAGCGACTACCAGCATCAACACCAATACCA ACATCTGATGGGTGCATACAATAACTTGATGCCAACTACAGCAACTTTTT CAACATCTTCATCATCAAGCCATGAAGCAACTGGTAAACACATTGACTTC AACCCTGCACCATTGGAGAGTAGCAGTTTACAATCATGGGGGTCGACCAT TTCTTTGAGGTCCAACACATCATCTGCTTCATCCAGCTCTCCAACAACAC CTTGCTCCTCAACACAAGGTGAAGATAAGTTGAGTGATGGAAATGTGCAA TGTGCTGTTTGCGAAGATAAAGCTTCTGGAAAACATTATGGAGTCATGAC TTGCGAAGGTAATTCAACAAATGTTGTTTATAACTGTTGtttaacaaacc tttccataggataaaTATATTTCTTTGTAAGATTTGTGTGATTCTGGCTA TATTTATTGATATGTTGATTTTCTTTCATTCTAGggtgcaaaagtttttt caagagaagcatAAGGAGAAATCTTCAATACGCATGTCGAGTGGACAACA ACTGCAATGTGGACAAACACAGACGAAACCAATGCCAAGCTTGCAGATTG ACCAAGTGCTTCAAAGCTGGAATGAAAAAGGATtgtaagttttcaaaaaa cgttttcaaaaaaacagtATTCAAACTTTGTTTACCTAACCTTTAAACCC AATTcctgttttatttttaaatttttaaattcgcTTTTTGTTTTCTTACA GCTGTTCAGCGAGGTCGACAAACAGTAACCAGATACAGTCCATACAACAA GTACCAACAAACACAAGCCAACGAACTAACCACCACCATGATCTCACAAT TCATTGCATCTCCTACACATCATGaacaaaatactgaaaatctCAATACT AAAGGCGTCAGTATTCTTTTAAACATCATTCAATGGGCCAAAACAAACCC GTACTTCCCATCTTTGACGGCAAACGATCAATTATCATTGCTTAGAATGT CATGGAAGGAACTCTTTGTTTTACATCTTGCCGAATCTTCAACTATACCA CCCCAAATAgagaatttgataagaaataATACCTCCCTGCAGGGAGGTTC ATTCGCAAATTACGTCAAGTCATTCCAACGACAATTGGACACTTTGGCTT CAATGCAACTCGATCAAGCAGAATATGCATGCCTTAAAGCACTTCTACTT TTCACTGCAGGTAACAATCTCTTCTTAACATAGCTAGTTCTTCTTAATCa agttcttcaaaaatgttaagtgaaaatatagcatagaaaatatttatttt tctaaaacctATTGTCTTCTCTTACTTTAGATTCTCCTGGACTTGAAAAC GCTTCATACGTACAAAACTTACAAGACAAAATATTGACGTCATTTGAAAA TTATGAACGAACAAAATACCCAACACAAATTGAACGATGCAGCAAACTGC TTTTATTGTTATCATCATTAAGAACAATCAACCCTGTCCTTCTTagtcaa attttctttgtatgGTCTTATGGCAAAGCACCTATTCTGGATGAGATCGT TCAAGACATGTTACTGGCATCTTACAACAACACCAGTGCATCATATGTTG GTGGTATTCAAATACCAACCACAACTCAAAATCCTTACAGTAATGAGCAA CCAACGAACTATCCAAATTATAGTTCTTCTTCCATATAATTCTTTTATag cttttgattatttttttaaatattctaaaaatgaaatttaaccGTTTGTA AATAGAGGGATTGTTTCCAAGAAGAAAGGTCAGAATCTGC
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00068138TCONS_00068138Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00068138-proteinTCONS_00068138-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_48supercontigscaffold_48:443694..453033 +
Orthologs
The following orthologs are found for this feature:
Ortholog NameDescriptionOrganism
NR2F2COUP transcription factor 2 isoform a Homo Sapiens
NR2F1COUP transcription factor 1 Homo Sapiens
NR2F6nuclear receptor subfamily 2 group F member 6 Homo Sapiens
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.03 0 0 0 1.26 1.02 1.6 1.59 0.74 1.41 0.21 1.23 1.88 0.74 0.18 0.74 0 0.04 0.14 0.09 0.03 0 0 0.03 0.08 0.05 0 0.04 0 0