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Sequence
The following sequences are available for this feature:
polypeptide sequence >TCONS_00068138-protein ID=TCONS_00068138-protein|Name=TCONS_00068138-protein|organism=Clytia hemisphaerica|type=polypeptide|length=490bp
LETICKRSKVDFSTFRMENYAATAGGGLSLPSTTSSFNEQLHTYAPVISS
TAPSTTSDYQHQHQYQHLMGAYNNLMPTTATFSTSSSSSHEATGKHIDFN
PAPLESSSLQSWGSTISLRSNTSSASSSSPTTPCSSTQGEDKLSDGNVQC
AVCEDKASGKHYGVMTCEGCKSFFKRSIRRNLQYACRVDNNCNVDKHRRN
QCQACRLTKCFKAGMKKDSVQRGRQTVTRYSPYNKYQQTQANELTTTMIS
QFIASPTHHEQNTENLNTKGVSILLNIIQWAKTNPYFPSLTANDQLSLLR
MSWKELFVLHLAESSTIPPQIENLIRNNTSLQGGSFANYVKSFQRQLDTL
ASMQLDQAEYACLKALLLFTADSPGLENASYVQNLQDKILTSFENYERTK
YPTQIERCSKLLLLLSSLRTINPVLLSQIFFVWSYGKAPILDEIVQDMLL
ASYNNTSASYVGGIQIPTTTQNPYSNEQPTNYPNYSSSSI Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
This polypeptide derives from the following transcript feature(s):
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0043565 | sequence-specific DNA binding |
| GO:0003700 | transcription factor activity, sequence-specific DNA binding |
| GO:0008270 | zinc ion binding |
| GO:0003707 | steroid hormone receptor activity |
| GO:0003677 | DNA binding |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006355 | regulation of transcription, DNA-templated |
| GO:0043401 | steroid hormone mediated signaling pathway |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0005634 | nucleus |
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006355 |
regulation of transcription, DNA-templated |
| biological_process |
GO:0043401 |
steroid hormone mediated signaling pathway |
| cellular_component |
GO:0005634 |
nucleus |
| molecular_function |
GO:0003677 |
DNA binding |
| molecular_function |
GO:0043565 |
sequence-specific DNA binding |
| molecular_function |
GO:0003707 |
steroid hormone receptor activity |
| molecular_function |
GO:0003700 |
transcription factor activity, sequence-specific DNA binding |
| molecular_function |
GO:0008270 |
zinc ion binding |
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| IPR001628 | Zinc finger, nuclear hormone receptor-type | PRINTS | PR00047 | STROIDFINGER | coord: 199..207
score: 64.76
coord: 166..181
score: 59.24
coord: 207..215
score: 53.58
coord: 150..166
score: 58.22 |
| IPR001628 | Zinc finger, nuclear hormone receptor-type | SMART | SM00399 | c4gold | coord: 147..218
e-value: 1.0E-37
score: 141.3 |
| IPR001628 | Zinc finger, nuclear hormone receptor-type | PFAM | PF00105 | zf-C4 | coord: 149..217
e-value: 1.4E-30
score: 105.5 |
| IPR001628 | Zinc finger, nuclear hormone receptor-type | PROSITE | PS00031 | NUCLEAR_REC_DBD_1 | coord: 150..176 |
| IPR001628 | Zinc finger, nuclear hormone receptor-type | PROSITE | PS51030 | NUCLEAR_REC_DBD_2 | coord: 147..222
score: 20.593 |
| IPR001723 | Nuclear hormone receptor | PRINTS | PR00398 | STRDHORMONER | coord: 410..427
score: 35.85
coord: 211..221
score: 39.35
coord: 290..306
score: 41.75
coord: 353..368
score: 42.5
coord: 269..290
score: 28.93 |
| IPR000536 | Nuclear hormone receptor, ligand-binding domain | SMART | SM00430 | holi | coord: 268..422
e-value: 1.4E-25
score: 101.0 |
| IPR000536 | Nuclear hormone receptor, ligand-binding domain | PFAM | PF00104 | Hormone_recep | coord: 257..432
e-value: 1.2E-22
score: 80.4 |
| IPR000536 | Nuclear hormone receptor, ligand-binding domain | SUPERFAMILY | 48508 | Nuclear receptor ligand-binding domain | coord: 199..449 |
| IPR013088 | Zinc finger, NHR/GATA-type | GENE3D | 3.30.50.10 | | coord: 142..209
e-value: 1.4E-31
score: 108.0 |
| None | No IPR available | GENE3D | 1.10.565.10 | | coord: 210..451
e-value: 5.1E-55
score: 186.2 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 120..143 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 469..490 |
| None | No IPR available | CDD | cd06916 | NR_DBD_like | coord: 150..221
e-value: 2.33419E-47
score: 158.494 |
| None | No IPR available | SUPERFAMILY | 57716 | Glucocorticoid receptor-like (DNA-binding domain) | coord: 148..224 |
Blast
BLAST of TCONS_00068138-protein vs. Swiss-Prot (Human)
Match: COT1 (COUP transcription factor 1 OS=Homo sapiens GN=NR2F1 PE=1 SV=1) HSP 1 Score: 275.404 bits (703), Expect = 8.165e-88 Identity = 141/355 (39.72%), Postives = 218/355 (61.41%), Query Frame = 0
Query: 128 SSPTTPCSS-TQGEDKLSDG----NVQCAVCEDKASGKHYGVMTCEGCKSFFKRSIRRNLQYACRVDNNCNVDKHRRNQCQACRLTKCFKAGMKKDSVQRGRQTVTRYSPYNKYQQTQANELTT-TMISQFIASPTHHE-----------------QNTENLNTKGVSILLNIIQWAKTNPYFPSLTANDQLSLLRMSWKELFVLHLAESSTIPPQIENLIRNN-------TSLQGGSFANYVKSFQRQLDTLASMQLDQAEYACLKALLLFTADSPGLENASYVQNLQDKILTSFENYERTKYPTQIERCSKLLLLLSSLRTINPVLLSQIFFVWSYGKAPILDEIVQDMLLAS 452
+P TP ++ +G+ G +++C VC DK+SGKHYG TCEGCKSFFKRS+RRNL Y CR + NC +D+H RNQCQ CRL KC K GM++++VQRGR T+ +P +Y T + L +S +I+ E EN+ +L + ++WA+ P+FP L DQ+SLLR++W ELFVL+ A+ S +P + L+ ++ + +F ++++ FQ Q++ L ++ +D AEY+CLKA++LFT+D+ GL +A+++++LQ+K + E Y R++YP Q R KLLL L SLRT++ ++ Q+FFV GK PI + +++DMLL+
Sbjct: 59 GAPATPGTAGDKGQGPPGSGQSQQHIECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRANRNCPIDQHHRNQCQYCRLKKCLKVGMRREAVQRGRMPPTQPNP-GQYALTNGDPLNGHCYLSGYISLLLRAEPYPTSRYGSQCMQPNNIMGIENICELAARLLFSAVEWARNIPFFPDLQITDQVSLLRLTWSELFVLNAAQCS-MPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDACGLSDAAHIESLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVRLVGKTPI-ETLIRDMLLSG 410
The following BLAST results are available for this feature:
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