XLOC_027399 (gene) - C. hemisphaerica

Overview
NameXLOC_027399
Unique NameXLOC_027399
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0004503:249..4661+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_027399 ID=XLOC_027399|Name=XLOC_027399|organism=Clytia hemisphaerica|type=gene|length=4413bp|location=Sequence derived from alignment at sc0004503:249..4661+ (Clytia hemisphaerica)
GTTCAGTGAGTATCTTATCCAGCTTGGCCACTTCTTTTAATCTCAAACAA
TACCAAAATGTTATTGTCAACAAAGTGaacaaaaatgacgtcactctaGA
CATCCttgaaatcatattcaaagacAACTTAGTCACACGTGGTGACTCGT
GGAGACTTCATCGATCATTGATTGGATCATGTATTTATTACAGTCAGAAA
TCCAATTTTCTGGATATGAGAAGTACAGTTAATGAGATGTGGATGAGAGG
CTGTAAAGTGGCTTGTGGTGTGGTCGGTGAAACTACAAAGGTATCATTGC
TCAAATTATCATTTTCTTAGGATAGTGCTACGAATGAAAAGAAATTGTTT
ATCTAAGTTCATTGGTTATAActgtaattttatttttaaattttaaatat
taaaaaaaagcccTTTTTTAATCACAATAACTCACCAGGACTATATAAGA
GCTCCGTTTTACGTTTTATCGACAATTAATCAAGTTGTTATTCTGCGCAA
TCAGTCCTAATTCTCCATAATCCTTTTCTTTAATACacccagaaaaaatt
aaaacagaaTAATTACATATTCATATTGTCACACAAATCTTCATAATCTA
CattttatataattttcattGTGTTTTTTATACTCtaatatatttcattt
taaaaaccttaGTATTAGTAATTGGATGTATTTGGAGTATTGTAAGTTGA
TCTTATgttgacacccacccaccctTCTTTAAAACtggaaataaataaaa
gatCGGAATGCTGACTGCTTATAAACGGTCATAGggaaaatgtctttttt
tcaatcagtgaccCCGACCTTTCttttaaagaagggtgtcagaattacaT
GAggaatgtcgacattagaccaacttacgataTGAGTTTTTTATCAAGAC
ATACAGAGGACAAGAGATTTTAATTGAAGGGTCTTTGAACAACTGGGAAT
TTTTAGGTTACAGTTGGTATTTATCAATGTTATTTCTAGGTTGTTTACAG
ATCAGCCAGTGCAATGTTCCACATCCTCCTAGACAAGAGATTTCAATTGA
AGGGTTTTTGACCACTAGGAATTTCTTGTGGTTACAGTTGGTGTTTTTTG
TTATTTCTAGGTTGTTTACAGGTCAGCCAGTGCAATGTTCCACATCTTCG
TACAAATGAGTGCTGAGATGTGGGAATGTGACTACACAGGGGAATTGTTC
TTCGAGAAAGCCATCATGTATTTCTTGAAAGACCTCTTCAACAAGTGgaa
agacaaagaaaataatTGCAATCATCAAGTggttattgttttgttttcaa
gaaCATATTATACCGCTAAAACTCTAGGTATGGATTTCAGTCTAATGTGA
ACTGCGCCTGTTCCCTTCTTATCTTGCActcagatgcagaaattttcatt
cgaaacgctaaagctctaaaggtcggggaaattttcaacatctggaaggt
ttagattacggaactCTACAAGACCGCGTCGAGTATTTTGTAGCGTGAGG
TCTGGTACTctttttcggggattggcgggtccaacagaaatatttttagg
tttacaGACAAGTGCAGTTGAACCTGACTGGGGATGCGGCATATCAAAGG
CCGTCTATCATTGACTATCATATAAATTGGctcgctcctttagagcttta
gcgtgggcggccgccaatccgccatcggaatatcagataagttcCCCTTA
TCCATGGAGATATGTGAGCagaaatattgattttattgtttagtaaattg
gaaaaaattagaaCCAAATTTATGTACATAGCCCTTTTCTTAGTAAAGGT
TTATTCTTCGATTTTTTACTATGATATGAATTTTAGAGTAAAACCTCACt
agaattgaaatatcaaaaacatTGAATGCAAAAGGAATTATCTTAGAAGG
GACACTCCTCTATATTGTCTCCTTTGTATGAAAGCGTAAAGCAACATATG
TACcatttttatttctaattaCAGACGAACTATCACCTGGACTACAAAAT
GACGTTTTACGAAGTCACGATGGTCGATATTATCAAGATTTCTACAAAGT
CATTCGGCAATGTGAAAAACATGATAATTTACAGAACGTTATTTTGGACT
TGAAAAGCAGTTTCCATGGTTATCCTCTATACGTTGGGTGTCAACAACCG
TTCAGTGATGATAAGACAAACCCCAAAGGAATTGGTATCAATTCAAGAGC
GCACGAAGGGAATTTACTTGAAGCTATTAATCTTTCTCTGAATGGTTAGT
AGATCTTTACAGAAagcccccagccgggtcataccagagattttcaaaat
ggtacttgatgcctctctgcttgatgctcagcaattaagagaagaatTAA
Ggttaagtggagcaatccagggagaaagagtggcgccctcccctaccgtc
gggtagatagctatcgaaaaaggagccttcgggtcgcttccgaggtcgca
gacttactttaCTACTTTACAGAAACTTCTACCCAGTACTTCGAttcact
tttttggcatttctGATACattaaagaagaaattttggcgggaagaaaat
ttggtgaATCAATTCGCCagattaagttcccgccaaatttaattttttcc
gtcatccgccaaattaaattcctaccAGATTTAAATTGCTCTATTTATTC
CCacaaatgtgtgctatttcaggctttaaaacaggctttttcctttttta
atggcgttttttgaacaaaaatgcccttcatccgccaaattaaattcccg
ccaaatttaatttttcaagttatcctctaaattaaattccctccgaaaaa
actttttcggaaactttttcggccatccgccaaattaaattcccgccgaa
ataaattcccgccaaaatttcttcctttaatgtagcTCTCACGAAAGATT
ATGCTTAACAAATGTTAGTTAGAATGTTAGTTTTACAGGTTTCCCCTTGA
TGTTTTAATTTAGAAAGCCGCTGGATAGGAGGGTGGGGGGTACGGTACTC
AGAAAAATAGAGTACGAAGACTACATGCCGCTGGTCAGGACTGCATCATC
CACATATCACAAAGTAGGTTTTGGAAAATGTAAAATGTTAAATCTTACAG
GGTCCAAATTTCGTCTGTCAGGGTCTGAATTTTGTCTTCCAGGGTCTGTT
TACGAAAGCTCTCCCTCGAAAGCTCCAACGGTACATCACCATCGGCTGTC
TAGGTCATTACCTGGGACTCGAAATCTAGTCAATTAGAAAAACTTATctt
ttttgtaacatttttctcttttcccCTTGAGGGCCTCATAATATCTATAA
GTGTATAATCGATTTTTTCTCGTAGTATTTGAGAAAGGTTACATCAATTG
CAACTTAGAAGAGACGAATTGTACGACCCTTATCATTACTCCAACAAGTG
GTGTCTTCGAGGTTGATGAAGAACTCACTGCTTTAACAAGAAACAGGCTC
ATCGATAACGgtaaataatactttttttgaAGTATAAGAAATCATTGCAA
ACCTAATTTTAAACAGCCTGTAAtaaactgatctttgttttgatgttttt
acacATGTTAAAAGTATACCGTTTATGTCTAACTAATATTGACAATTCAA
CCTAATTTCCAATGATCTGCGTCTTCAGGCttttattcaaaagaaataCT
CAGTGAAATTCCAGTCATTAGGTCCATTCTGAACTTGACGACATGTTCAT
GTCCATACTGGTTGTGTTTAACCGATTTAAACCTTTTAATCCAATTTACA
TTGATTCTATTGTTGGGGCTTTTATTTAATATATTCACCTACGGTGGCGT
TACGGCGATCTTAGGTCCCTACCGGTGGTATCCAGTCAAAGATGAGTAAG
ACGTCTGATGCCTCTCTGTTTGATGCctagcaactaaagagacgaaTCAA
GGGTAGGTGGAGatatccagggaaaggagtggcgcccccctaccttcggg
tagacagctatacgaaaagggagccttcggggcGCCCTCGACTTACTTAT
ATTTCTTTGTCTTAAACATCAGGTGTTGGTATCGATCTTGTCTGTCTTGG
TGAGCAGCCTCTCCACGCTGTTCCACTCATCAAATTCTGTTCCAAATCTT
CCAAGACGAGTACCGAAGATACATATAATGTTCCACAGTGGATCAACTTG
AGTTATTACTCTAAACCTGACTCCAAATCTTCTGTATTCGTACCTCGCAT
GACGGTACCTGAAAAACCACCTCCTTCTGAAATTTGTaagttgtttttct
cttttttattttattatgcTTGATACTTTTACGGCTTAAGGATATCAGTT
GATCCTTTAAAGGTTTGATTTTTACATAAGTCTTCCCGTTTCATACCAGA
CACATGTTttccttttcctctttctaaccaatcttgctccacatccgtgt
caatccaatgtga
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00043716TCONS_00043716Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00043716-proteinTCONS_00043716-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004503supercontigsc0004503:249..4661 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.51	0.64	4.21	5.62	4.27	2.52	4.87	5.48	2.15	3.06	1.8	1.92	2.85	2.59	2.15	3.09	2.86	2.83	2.1	1.35	1.79	1.97	1	1.76	4.1	4.24	0.39	0.35	1.46	1.07