XLOC_027188 (gene) - C. hemisphaerica

Overview
NameXLOC_027188
Unique NameXLOC_027188
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0004289:762..7615+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_027188 ID=XLOC_027188|Name=XLOC_027188|organism=Clytia hemisphaerica|type=gene|length=6854bp|location=Sequence derived from alignment at sc0004289:762..7615+ (Clytia hemisphaerica)
tgaattttcaCTGCTATTATTTTTCGCGGACTTTTTTTAATTACGTCATA
CCCGGAAAAACCTTTACGCATGCGTAACATAGTGAATGTAAACaacattg
taattttttttgaatgttcAGAATTTCAAACATTTATTTCTTGGTTTGTT
GGTTTTGGTTCAGAATGCCGGTAAAATCTGTCCAACTTTCCAAGAAGAAA
AACATCTGGATTTGAAtggtttttaagaaaatttagcAGTGGAAATAGGC
GAAAGAAAGATTTATTTTGCTAAAAGATATTCTCTGCTTGGACTGATTGA
GTGAAATGAACTTGAGCAGGTTTGCAGCAACTTTGCAACGCAGAATTTTA
TCAAAGCATGAATTAGAATCACATTTCATTATCTGCTCACAGTGTAGAAA
TCTCAGTAGAAAAACTCCAGCTGCATTTCAACTTGCCTCTTCTCAAGAGG
ATTTCATTGATTGCACTAAACCTGCACGTAAGGTGAAAGTTGGAGTAGTA
TTTGATATCGATGGAGTGTTGGTTAGGGGTCGGAATGTTATACCCACTGC
AAAGGAAGCCATTCATAGACTAGAGGACAATAATGTTCCATATATATATT
TAACAAATGGGGGTTGTGAAACAGAGGAACAGAAAGCTGAAAAGCTGAAA
GAAAGACTCGGTATTGAGGTAAACAAAATTCTCCAAAGCTTTCTCTTATA
CAACGGGCCATTCTAGAATTTGTCTATAACAGGGGAGCGGaagacacagg
atttccgagggcaaaagttttcaccaaaattcgaaatttccaaggtgaga
gaagaaaatgtatgaatacgcctttcccgtaattcaaagttctcagaaat
ggcccggcaAAATGTGTGCTCCaacgttgtgtataaaattgcttgggagg
taaaaaacgcgtttttgcctgtNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNA
TCTTGCGTTCCTGTGTATAAGGCCCGGGTACAAAGAAAGGCAGACGCTTG
CTAATCTATCCCTATATAAAAACGTATCAGAGGGGTTGCGTGCAGCGTAC
AAAAAACTTGCTTgttaatttctgtaattttggAGGTGTGTTGGAGGCGT
TGGAAAATCGACATATTTTTTACGCGCGTTTGAATCTACGAAAGTTCAAT
ATTTGCTTTGATATAAGTTACTATAAAATTTCTATaagtttttcttcctt
ttcccTCTGCTATAAAAGATATTAATTCAAAAATCTGGAagaaaagttga
attttcaCTGCTATTATTTTTCGCGGACTTTTTTTAATTACGTCATACCC
GGAAAAACCTTTACGCATGCGTAACATAGTGAATGTAAACaacattgtaa
ttttttttgaatgttcAGAATTTCAAACATTTATTTCTTGGTTTGTTGGT
TTTGGTTCAGAATGCCGGTAAAATCTGTCCAACTTTCCAAGAAGAAAAAC
ATCTGGATTTGAAtggtttttaagaaaatttagcAGTGGAAATAGGCGAA
AGAAAGATTGTATTTTGCTAAAAGATATTCTCTGCTTGGACTGATTGAGT
GAAATGAACTTGAGCAGGTTTGCAGCAACTTTGCAACGCAGAATTTTATC
AAAGCATGAATTAGAATCACATTTCATTATCTGCTCACAGTGTAGAAATC
TCAGTAGAAAAACTCCAGCTGCATTTCAACTTGCCTCTTCTCAAGAGGAT
TTCATTGATTGCACTAAACCTGCACGTAAGGTGAAAGTTGGAGTAGTATT
TGATATCGATGGAGTGTTGGTTAGGGGTCGGAATGTTATACCCACTGCAA
AAGAAGCCATTCATAGACTAGAGGACAATAATGTTCCATATATATATTTA
ACAAATGGGGGTTGTGAAACAGAGGAACAGAAAGCTGAAAAGCTGAAAGA
AAGACTCGGTATTGAGGTAAACAAAATTCTCCAAAGCTTTCTCTTATACA
ACGGGCCATTCTAGAATTTGTCTATAACAGGGGAGCGGaagacacaggat
ttccgagggcaaaagttttcaccaaaattcgaaatttccaaggtgagaga
agaaaatgtatgaatacgcctttcccgtaattcaaagttctcagaaatgg
cccggcaAAATGTGTGCTCCaacgttgtgtataaaattgcttgggaggta
aaaaacgcgtttttgcctgtgAGGGGTTAGGGGAAGTGGGATTtgagcct
ctaacttttgacagcgatcttcttttggcaaaataatttcagggtggtat
aatatcatgaatagattgaacatactaaaatttgattgaggggattttgt
tcaacagaacttaagaaaagctcaaaaaaccaactttccctaagggaacg
caggcaaaaacgggtttgtttacctccagacggtgtcaatcgaacgaatc
gaacgccgaatcaattgaacccaatcgaacacaatcgaataattgcgatt
cgattgtcgaacgcaatcgaatattacccagaatttgccgttccattgct
tcgattacgtttgattgtattcgactatgttcgattgcgttcgattgatt
caattgtattctaTTTTATTCATTCTAGTACGGTTACTTATGCATTCGGC
CGTCCACGCTAAAAAGAGCTTTAAAGGAGTGATCAAagttaatttaatcg
caatcaaacttatCGAAAATAATCATAATCGAAGATCAATCGAAGGTAAt
ttacaatcaatcgaaccaattaaACATAGGTTggctatcaatcgaaccaa
tcgaacgttacttgaacgcaatcgaacacaatcgaatattacccaagaat
cggccgttcgattgagattcgattgcgttcggcaatcgaatcgcaatcat
tcgatcgcgttcgtttgcgttcgattggttcgattgcgatttccgtttga
agttgttcgattgacaccgtctggttacctccagagaccaaacggtggag
agcatcaaaatattGCGTGTGcgttagttttacgaattatgGCAAAGGTg
tatttccaaggcaattgaattaaaaaaggcaaaaaagagtggaatttctg
atgcattttgcaaaagtacatggattttttatcagaatttccgaccaccg
ctggaaaagaaaaattatttccgaggctagaataaattttaaaatgcacg
tcgtccgacagagggtaacaaaaattttctggaatggcccaacgACCCTG
CCTGCCAGAACAGTGTGTCTGTCCTGCCAATGCACTGGACTTNTCCGAca
gggggtaacaaaaattttctggaatggcccaacgACCCTGCCTGCCAGAA
CAGTGTGTCTGTCCTGCCAATGCACTAGACTTACAAAAGCACCTAATGTG
AATGTCAAATGAGAAATTTTTTACAACAAAACAATCCAAACaccagactc
aatttgtagaaaTTAGACTAATACAGTAATGGGCCATTCTGCGATTTTGA
TcctgaaaaagatttcaaactGGTCCACCCAAAgggaaaatcacaaattt
tgtgAACTGAACTTGACCCAAACATCAATGTTTGGGtcaaaagaatgttt
ttctattttggccTGCTCAAACATTCGactggaaaatgtttttgaggtcT
GCTCAAGATACACTGTGGGTCGTGAAATTTGTttcgtaagttggtctaat
tattcctatctttaaagaagggtgtcggaattagaagagggatgttaaca
ttagaccaacttatatacagtactctcgggtgcctattATTTTTGTGTca
aatttcccgcctgtacgcacatagtgtcctccccccccctttataaaggg
gggggattctgattttggccctttttttaaagtatgggggaaaatgaaaa
atttgaaaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNTAAGCACTTCCCTTGAATTTGCAAAGTA
AAGTATTTTATAAAGTTAGTATGTGATAATTTCTGCTTGTAGATAACAGA
TTAGGCCTTTTTCCTGCTTTTTCAGACacaaatgtttgatttttttaggt
GGACCCTGATCAAGTGGTATTATCGCATTCACCGCTCAGGATATTGGACA
TTCTACATCATAAACATGTCATGGTTTCTGGACAAGGACCTGTCTCGGAA
ATTGCACAAATGTatcttttctaaaaaatttatttttgtttgggGAAACT
AAATTCTTTTGTCTTTATATTATGACtgatatctttttaaaaaactttaa
ccTCAGCTAAACGGTTGCCTCAAATTTCGAATTACAAATTTGCATATTTG
CATATTTTCACAGACATGCTGTTATATTTCTGTCACCATGANCAAATTTG
CATATTTGCATATTTTCACAGACATGCTGTTATATTTCTGTCACCATGAG
TAAACTGTTTTTAATTTGATCCTATTCATTAATAATCTACAtaatttgtt
tttaactttttaaagtcagttcaaaataattatttctccATAAGATCAAA
TGCTGTCACAGCTTCTTGCCATTTTAATGATGACATCAGAAATATGCATG
GAATTATTTATTTTAGTTTACAATAATTTTAAATATACAAAGTAAGAATA
ATGAATGGATgagtgaatgaatgaatgagtgaattaatcaaaaaatgata
aaaaacagGACTAATGAAATGTGCCACCATTGATTGGAtttaaattctat
ttttttacAAACCAATTACCCTTAACTGTGATGAAATTTAACGAAACAGG
TGTGGTTTTTCCAAAGTGTCGCATGTGAATCATATTGATGGATATTTTCC
AGAGCTTGATGTCAATGATCGAAGGAAACAAGAACGAATGGTAAGTAGCT
ACCCAAAGATGAgacatttttaacaaaatcagGAATTTTCATTTCCACTG
AGTGAGACTTgtgcattgttttttttttggtttccgCTGTCTTCTAGAAT
TATATTCTTTCATTTGTTGGCTATCAACACGTTCGCTGTCGACTACGAAT
ATTCTTAGTAGAGGGGTCAAAATACCCCGGTAGTACTTCAAcgagccata
acttttgatacagaaattttttattgcaatattaAGGCCCCCCAGGAGTC
TCTGAAAAGTcaaacttttgatgaaatttcaagatgtcaattttccgatt
tctg
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00043494TCONS_00043494Clytia hemisphaericatranscript
TCONS_00043495TCONS_00043495Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00043494-proteinTCONS_00043494-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004289supercontigsc0004289:762..7615 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
11.73	11.54	3.34	3.36	12.14	8.51	10.88	12.06	16.29	16.09	23.51	23.75	18.58	26.08	14.18	13.24	25.01	36.65	28.51	25.28	41.37	40.62	14.8	19.92	30.53	27.56	12.84	11.28	9.47	10.13