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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00043495 ID=TCONS_00043495|Name=TCONS_00043495|organism=Clytia hemisphaerica|type=transcript|length=1052bp
ATTTCTTGGTTTGTTGGTTTTGGTTCAGAATGCCGGTAAAATCTGTCCAA
CTTTCCAAGAAGAAAAACATCTGGATTTGAAtggtttttaagaaaattta
gcAGTGGAAATAGGCGAAAGAAAGATTGTATTTTGCTAAAAGATATTCTC
TGCTTGGACTGATTGAGTGAAATGAACTTGAGCAGGTTTGCAGCAACTTT
GCAACGCAGAATTTTATCAAAGCATGAATTAGAATCACATTTCATTATCT
GCTCACAGTGTAGAAATCTCAGTAGAAAAACTCCAGCTGCATTTCAACTT
GCCTCTTCTCAAGAGGATTTCATTGATTGCACTAAACCTGCACGTAAGGT
GAAAGTTGGAGTAGTATTTGATATCGATGGAGTGTTGGTTAGGGGTCGGA
ATGTTATACCCACTGCAAAAGAAGCCATTCATAGACTAGAGGACAATAAT
GTTCCATATATATATTTAACAAATGGGGGTTGTGAAACAGAGGAACAGAA
AGCTGAAAAGCTGAAAGAAAGACTCGGTATTGAGgtGGACCCTGATCAAG
TGGTATTATCGCATTCACCGCTCAGGATATTGGACATTCTACATCATAAA
CATGTCATGGTTTCTGGACAAGGACCTGTCTCGGAAATTGCACAAATGTG
TGGTTTTTCCAAAGTGTCGCATGTGAATCATATTGATGGATATTTTCCAG
AGCTTGATGTCAATGATCGAAGGAAACAAGAACGAATGGTAAGTAGCTAC
CCAAAGATGAgacatttttaacaaaatcagGAATTTTCATTTCCACTGAG
TGAGACTTgtgcattgttttttttttggtttccgCTGTCTTCTAGAATTA
TATTCTTTCATTTGTTGGCTATCAACACGTTCGCTGTCGACTACGAATAT
TCTTAGTAGAGGGGTCAAAATACCCCGGTAGTACTTCAAcgagccataac
ttttgatacagaaattttttattgcaatattaAGGCCCCCCAGGAGTCTC
TGAAAAGTcaaacttttgatgaaatttcaagatgtcaattttccgatttc
tg Run BLAST on NCBI transcript from alignment at sc0004289:2194..7615+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00043495 ID=TCONS_00043495|Name=TCONS_00043495|organism=Clytia hemisphaerica|type=transcript|length=5422bp|location=Sequence derived from alignment at sc0004289:2194..7615+ (Clytia hemisphaerica)
ATTTCTTGGTTTGTTGGTTTTGGTTCAGAATGCCGGTAAAATCTGTCCAA
CTTTCCAAGAAGAAAAACATCTGGATTTGAAtggtttttaagaaaattta
gcAGTGGAAATAGGCGAAAGAAAGATTGTATTTTGCTAAAAGATATTCTC
TGCTTGGACTGATTGAGTGAAATGAACTTGAGCAGGTTTGCAGCAACTTT
GCAACGCAGAATTTTATCAAAGCATGAATTAGAATCACATTTCATTATCT
GCTCACAGTGTAGAAATCTCAGTAGAAAAACTCCAGCTGCATTTCAACTT
GCCTCTTCTCAAGAGGATTTCATTGATTGCACTAAACCTGCACGTAAGGT
GAAAGTTGGAGTAGTATTTGATATCGATGGAGTGTTGGTTAGGGGTCGGA
ATGTTATACCCACTGCAAAAGAAGCCATTCATAGACTAGAGGACAATAAT
GTTCCATATATATATTTAACAAATGGGGGTTGTGAAACAGAGGAACAGAA
AGCTGAAAAGCTGAAAGAAAGACTCGGTATTGAGGTAAACAAAATTCTCC
AAAGCTTTCTCTTATACAACGGGCCATTCTAGAATTTGTCTATAACAGGG
GAGCGGaagacacaggatttccgagggcaaaagttttcaccaaaattcga
aatttccaaggtgagagaagaaaatgtatgaatacgcctttcccgtaatt
caaagttctcagaaatggcccggcaAAATGTGTGCTCCaacgttgtgtat
aaaattgcttgggaggtaaaaaacgcgtttttgcctgtgAGGGGTTAGGG
GAAGTGGGATTtgagcctctaacttttgacagcgatcttcttttggcaaa
ataatttcagggtggtataatatcatgaatagattgaacatactaaaatt
tgattgaggggattttgttcaacagaacttaagaaaagctcaaaaaacca
actttccctaagggaacgcaggcaaaaacgggtttgtttacctccagacg
gtgtcaatcgaacgaatcgaacgccgaatcaattgaacccaatcgaacac
aatcgaataattgcgattcgattgtcgaacgcaatcgaatattacccaga
atttgccgttccattgcttcgattacgtttgattgtattcgactatgttc
gattgcgttcgattgattcaattgtattctaTTTTATTCATTCTAGTACG
GTTACTTATGCATTCGGCCGTCCACGCTAAAAAGAGCTTTAAAGGAGTGA
TCAAagttaatttaatcgcaatcaaacttatCGAAAATAATCATAATCGA
AGATCAATCGAAGGTAAtttacaatcaatcgaaccaattaaACATAGGTT
ggctatcaatcgaaccaatcgaacgttacttgaacgcaatcgaacacaat
cgaatattacccaagaatcggccgttcgattgagattcgattgcgttcgg
caatcgaatcgcaatcattcgatcgcgttcgtttgcgttcgattggttcg
attgcgatttccgtttgaagttgttcgattgacaccgtctggttacctcc
agagaccaaacggtggagagcatcaaaatattGCGTGTGcgttagtttta
cgaattatgGCAAAGGTgtatttccaaggcaattgaattaaaaaaggcaa
aaaagagtggaatttctgatgcattttgcaaaagtacatggattttttat
cagaatttccgaccaccgctggaaaagaaaaattatttccgaggctagaa
taaattttaaaatgcacgtcgtccgacagagggtaacaaaaattttctgg
aatggcccaacgACCCTGCCTGCCAGAACAGTGTGTCTGTCCTGCCAATG
CACTGGACTTNTCCGAcagggggtaacaaaaattttctggaatggcccaa
cgACCCTGCCTGCCAGAACAGTGTGTCTGTCCTGCCAATGCACTAGACTT
ACAAAAGCACCTAATGTGAATGTCAAATGAGAAATTTTTTACAACAAAAC
AATCCAAACaccagactcaatttgtagaaaTTAGACTAATACAGTAATGG
GCCATTCTGCGATTTTGATcctgaaaaagatttcaaactGGTCCACCCAA
AgggaaaatcacaaattttgtgAACTGAACTTGACCCAAACATCAATGTT
TGGGtcaaaagaatgtttttctattttggccTGCTCAAACATTCGactgg
aaaatgtttttgaggtcTGCTCAAGATACACTGTGGGTCGTGAAATTTGT
ttcgtaagttggtctaattattcctatctttaaagaagggtgtcggaatt
agaagagggatgttaacattagaccaacttatatacagtactctcgggtg
cctattATTTTTGTGTcaaatttcccgcctgtacgcacatagtgtcctcc
ccccccctttataaaggggggggattctgattttggccctttttttaaag
tatgggggaaaatgaaaaatttgaaaNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAAGCACTTC
CCTTGAATTTGCAAAGTAAAGTATTTTATAAAGTTAGTATGTGATAATTT
CTGCTTGTAGATAACAGATTAGGCCTTTTTCCTGCTTTTTCAGACacaaa
tgtttgatttttttaggtGGACCCTGATCAAGTGGTATTATCGCATTCAC
CGCTCAGGATATTGGACATTCTACATCATAAACATGTCATGGTTTCTGGA
CAAGGACCTGTCTCGGAAATTGCACAAATGTatcttttctaaaaaattta
tttttgtttgggGAAACTAAATTCTTTTGTCTTTATATTATGACtgatat
ctttttaaaaaactttaaccTCAGCTAAACGGTTGCCTCAAATTTCGAAT
TACAAATTTGCATATTTGCATATTTTCACAGACATGCTGTTATATTTCTG
TCACCATGANCAAATTTGCATATTTGCATATTTTCACAGACATGCTGTTA
TATTTCTGTCACCATGAGTAAACTGTTTTTAATTTGATCCTATTCATTAA
TAATCTACAtaatttgtttttaactttttaaagtcagttcaaaataatta
tttctccATAAGATCAAATGCTGTCACAGCTTCTTGCCATTTTAATGATG
ACATCAGAAATATGCATGGAATTATTTATTTTAGTTTACAATAATTTTAA
ATATACAAAGTAAGAATAATGAATGGATgagtgaatgaatgaatgagtga
attaatcaaaaaatgataaaaaacagGACTAATGAAATGTGCCACCATTG
ATTGGAtttaaattctatttttttacAAACCAATTACCCTTAACTGTGAT
GAAATTTAACGAAACAGGTGTGGTTTTTCCAAAGTGTCGCATGTGAATCA
TATTGATGGATATTTTCCAGAGCTTGATGTCAATGATCGAAGGAAACAAG
AACGAATGGTAAGTAGCTACCCAAAGATGAgacatttttaacaaaatcag
GAATTTTCATTTCCACTGAGTGAGACTTgtgcattgttttttttttggtt
tccgCTGTCTTCTAGAATTATATTCTTTCATTTGTTGGCTATCAACACGT
TCGCTGTCGACTACGAATATTCTTAGTAGAGGGGTCAAAATACCCCGGTA
GTACTTCAAcgagccataacttttgatacagaaattttttattgcaatat
taAGGCCCCCCAGGAGTCTCTGAAAAGTcaaacttttgatgaaatttcaa
gatgtcaattttccgatttctg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00043495-exon-sc0004289-1491911889:2194..2727 | TCONS_00043495-exon-sc0004289-1491911889:2194..2727 | Clytia hemisphaerica | exon |
| TCONS_00043495-exon-sc0004289-1510915933:2194..2727 | TCONS_00043495-exon-sc0004289-1510915933:2194..2727 | Clytia hemisphaerica | exon |
| TCONS_00043495-exon-sc0004289-1575043694:2194..2727 | TCONS_00043495-exon-sc0004289-1575043694:2194..2727 | Clytia hemisphaerica | exon |
| TCONS_00043495-exon-sc0004289-1491911889:6510..6622 | TCONS_00043495-exon-sc0004289-1491911889:6510..6622 | Clytia hemisphaerica | exon |
| TCONS_00043495-exon-sc0004289-1510915933:6510..6622 | TCONS_00043495-exon-sc0004289-1510915933:6510..6622 | Clytia hemisphaerica | exon |
| TCONS_00043495-exon-sc0004289-1575043694:6510..6622 | TCONS_00043495-exon-sc0004289-1575043694:6510..6622 | Clytia hemisphaerica | exon |
| TCONS_00043495-exon-sc0004289-1491911889:7211..7615 | TCONS_00043495-exon-sc0004289-1491911889:7211..7615 | Clytia hemisphaerica | exon |
| TCONS_00043495-exon-sc0004289-1510915933:7211..7615 | TCONS_00043495-exon-sc0004289-1510915933:7211..7615 | Clytia hemisphaerica | exon |
| TCONS_00043495-exon-sc0004289-1575043694:7211..7615 | TCONS_00043495-exon-sc0004289-1575043694:7211..7615 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0004289 | supercontig | sc0004289:2194..7615 + |
Blast
BLAST of TCONS_00043495 vs. Swiss-Prot (Human)
Match: HDHD5 (Haloacid dehalogenase-like hydrolase domain-containing 5 OS=Homo sapiens GN=HDHD5 PE=1 SV=1) HSP 1 Score: 112.849 bits (281), Expect = 8.502e-28 Identity = 63/140 (45.00%), Postives = 85/140 (60.71%), Query Frame = 1
Query: 358 GVVFDIDGVLVRGRNVIPTAKEAIHRLEDNN----VPYIYLTNGGCETEEQKAEKLKERLGIEVDPDQVVLSHSPLRILDILHHKHVMVSGQGPVSEIAQMCGFSKVSHVNHIDGYFPELDVNDRRKQERMVSSYPKMRH 765
G + DIDGVLVRG VIP A +A RL ++ VP +++TN G + KA++L LG EVD DQV+LSHSP+++ H K ++VSGQGPV E AQ GF V V+ + FP LD+ D ER + + P R+
Sbjct: 48 GFLLDIDGVLVRGHRVIPAALKAFRRLVNSQGQLRVPVVFVTNAGNILQHSKAQELSALLGCEVDADQVILSHSPMKLFSEYHEKRMLVSGQGPVMENAQGLGFRNVVTVDELRMAFPLLDMVDL---ERRLKTTPLPRN 184
The following BLAST results are available for this feature:
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