XLOC_025517 (gene) - C. hemisphaerica

Overview
NameXLOC_025517
Unique NameXLOC_025517
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0002920:5582..15189-

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_025517 ID=XLOC_025517|Name=XLOC_025517|organism=Clytia hemisphaerica|type=gene|length=9608bp|location=Sequence derived from alignment at sc0002920:5582..15189- (Clytia hemisphaerica)
TACAGGACAACATCACGTGATCATTACGAAGTGATTCGATTGGTTTACAT
GTTGATGTTGAAAAACGAAGAAGAAAATGATATTGTTAATGAAAATTTCA
TTGAAATTCTTCTTTCCTTTAAAGGTAACTTTCCCTTGGGTTAACCAATC
AAATCTACCAAAACAATCTTTTATAACAAGTTTTATTTCATAACAGCACC
CCTGTTTGTTGCTCGCCCGATCTTAAGGTGCTTGTTTTGTCCCTTCAAAC
AATGGCTATTTTAAAAAATGCAATAAATCCATTATCGTTTAGATTTATAT
AACCAATCACAGCGCGATTTCAGTACCCACGTGACTCCATTTAACAGACC
TGATTGGCTAGCACCTTTTCAATACAACATGCTCCAACATTTTGCTGAAA
AATTCCCACCCTTTAAATCTTTTGTCGAAGATCTCTCTACGTCATCAGGA
GCAATCAAGGAATGGTCAGAAACAACACGCCCGGAAGAGACACCCTTACC
GCTTAACTCATCTTCGGCTCTGCGTGTTTTGGCCATTATGGCACTCCGTC
CGGATAGATTGAGTTTTGCATTGAAGAAATGGACCAGAGAAATTATGGAT
GATTTTACTTTCCCTGGGTTGATGGAATGTCTCGCTTCGTTTGATTCTGC
CAAGCCTTTGTTGATTGTGAAAAGCAGGGAGATGGAGTGTGCGCAATACA
TGGATCATCTACAAGCTTATGCAGAGGTAAATATCATTTCTTTTTTGACC
TTCTTAATAGAAAATATCTTCCTAAATATTGAATTAATTATAGGAAAAAT
TTAATGAGATATGAAACTAGAGTCGAGGTATATACAACATAACGTTGTTT
CAACAGCATATTTGCGTTATGCGGACGATAGAGATGAACCTTGTTTCAAC
CGTTTGTGCTAAGTTAGAACAAGACTACATAACTCTATATCGATTTCTAG
AATGGACATATATAGTCATTTCCACCTAACGGTCGAGGCTAGCCGTACCG
CAAAATGTTAGACAGGTTTTGTCTTGAAGAGGCTGTGTTTTCTTGTAATT
ACAGACGGAGCTGCAACGAAATTTTAACATTTGAATATAAATTTACATGA
TATTAAAATTGCATATAAAGGAGACATGATTGATAATTCTTTTCGATATC
TTCACTATATCTACAGAAGGAGAAATTAAAACCACACTACATTTGTATGA
GTCAAGCTGATCGAGATGCGATTGATGCCTCGCTCACCTCAGCTATACAA
CACGATTTATTCCTTGTTATTGACAATATTCATTTGACTAACCAAGACCA
TTTGTCTTCGTTATACAATCGCTTGTTCAGACTTCGTCAACAAAGTATTG
ATGGTAAGAATATGAATGTTGTTGCCGTGGTCACTTAGTACTAGAAGATC
AAATCTCGATAAAATAACTATACTATTTTGCCTTATTTTGGATAAGAAGG
TTGTACCAGTCTATCATTTGAAATTCAAATTTGTGAATTTGGGATAGTTA
AGGCGTTCTTAATTTCCCCTTGACGGGCAATTCTGTGTGATACCTTATCG
GGGAAAAGAATGTCGGAGTTTTATTTAGTCGGGGTTTTCTTTCGTCGGGG
AAAAACTTCGTCACCTAGAGGCATTTTCGTCACTTTTCCCCGACCAAAAT
CACTATTTAGTCACTTTCTCCCAACTAAATTGTCCAAGTAAAATGGTTTC
CTTCACTTGCTCGAAAGAAGATGTTGTAATTCGACGTTTAAAGCACTAAT
TTCGGTTAATAAAGGTGTGAAAAATTTAGATTTTAATTTTGTTTGGGGTT
TAAAAAAATCGAGTAAAAGTTTTGGTCGGGTGATAAAATATCGGGGAAAA
AATTCGTCACCCGCTCAAAATTTTCGTCACTTGCCCCCGACATTTTTCCC
CGATAAGGTAGTTGGCAAAAACCTCGAATGAATGATGCATAAAAAAGGAC
TTTTTTATTTCAATACCTGTAGTAGGGGGGGGGGTGTTTTCCTTATAAAG
TCGAGGATTTTATATTATCAAAAGATTTCTTTTTCTTTTTTTCATACTCA
CAGGTGTGCGATGGAGAGTAGCTCTGGTTACAAACGATACAAGGAATATT
AACGAACCCTTATTGAGATTATGTACAACGGTCAATTGGGATTCTATCAC
TTTTGACGAAAAACAGACAAATCTATGCGATGAATTATCATGGACGAAAT
GTTTACACTTCAACATCACAAAAGCTTTGAAGGTTAGTATATTGGCCTGT
CTCTGAATCAGAAGTTTTTTCGTATGTATTTTCTTTGCTCTTCAGGTACC
TTCAGGTTATTTTACAACAGACTTAAAATATGCAAATTTAAAGCTAACAA
GAAACTGACAATCGACTTTTAACCATACATTCATTATCATCGGTAGTCTA
GCTGATATACAGTTGAAAAGATACGTGAAAAATAAGCTTAGCTATATTTA
GGAATCAATCTCATGTTATGCTTGTGATATGCTTATTTATCCTGAAATCT
TTCAGTACATTCTTCAAAAGGTTAAAAATGAGCAATTAAGAATATTATTG
GTTTAGTGTAAATACTTGAGATCTTGGGATACTTGGTAAAAGGTAGTGGT
ATAATGGCTATTATCCTGGACTCGAGCCTGGGAGGCCCGAGTTCGTTACC
CACCCATTGAGTTTAAAGCCCGGATGGCTAGAGTAGAATCTCTATTCTTT
CTCAGGCAAGAAAAAGTGAAGCCATCCAGAACGCGCCTAGAACGCGCCGT
AATTATGACGATGGATTGTATCTATTGGTTTCTTTGTTTTTGAGGATTGT
ATTTTTTTAAATCAAGCGATAGACTTTACTTTCAATCTAGCGTTTGTGTA
AAAACCACGCGCGGGCGTTTTGGACTTACCCCGGTGGGGTGGAGGTCCTA
TAAATTCACCTCTGTCCGTTCGTCCGTCCGTCCGTTCGTTACCAGCTTTT
CTCGAGATTGAATCATAGGAATCATCTGATTTTTGGTACAAAGGTGCAAA
ATGGTGGTGGCCAAAATGTGACGGAGCCCGATTTTCGAAAAAAAAATTTT
TTGGCTAATTTCGGCCAAAAACGGCTAAAAACGGGTTTTTTGGACTTTGT
GAAAAATTGGATCATTAAATTTTTTTGATTTTTTACATGGAAGTAGGGTA
CCATCATAGGTAAAGGATGGCTCAAGCAGGTTTTTGCAAAAAAATTTATT
TGGCTTAAAAAACGCATGTTTATCTATAAGAATCACTATTAATAAGCATA
CAATTTTTTTTATGAGATATATATTTTTTTTTGCTCATGAGGGCTTACTT
TTAAAGAATATGTGTGTTAGCCATGACATTTTGGTTGCTTTGCGTGTTTT
TTTATAGAAAAACTGGCCAAATTCGATAATTTTTTATAAGCACATTATCA
ATTACTTAGGTATTAGCTTTTGTCGAGATTGGTTCTTTCATTCTTTATGA
CTTTTTGCACAAAGATGCATAACTTTAAACCCTCGAATGTGACGGAGTCC
AATCTTTGAAAAAAAAAATGTTTTAGGGCAAATTTGGGCCAAAAAACGGC
TAAACAACGGGTTTTTTGGACTTTGTGAAAAATTGGATCGTTGATTTTTT
TTGCATGAAAGTAGTGTACCATCATAGGTAAAAGATGGCTCAGGGAGATT
TTTGCAAAAAAGATTTGTTGGCTAAAAAAACGCATGTTTATCTATAAGAA
TCACTATTAATAAGCATACATCAATGTTCTTAGCCAAATTACTCAATTTT
TTGATGAGATAGATGTTTTTTGCTAACGAAGTCTTGAATATGAAAGAATA
TTTCAAGGGCATGAAATTTTGGTTTCTAAACGTTTTTTTAATAAGAAACA
AAGGACTAATTTTAATAAATCGTCACTATTTGTGTTCTGAATGATTGTTT
AACGTTCATATCCTCACGTAGATATCAATTATAAATGTGTTAAATGCATA
ACCAGGTAGGTCCATAAAAGTATCACTTGTTGAATGGGAAATTAAGTGGC
TTCATTTCCCATCCTGGAGTCTCGAGTTTAGCCCTTCGGGCTTGGAAGTC
AATATACCCACCGTGTCGCTACTTTTCGCTTGGCAAGTGAATATTCCTTT
GCCCGGGTCAACCCATGCCATGTGAGGAGAATTGGGTACCATTACTACAT
TACTATATAATATATGAGTGTGGGTAGACTTGGGTAGATAAGACTGGCAT
TGTGACGTGCCTTGGCACTCACAAAGTTCGACCTCGCGTGAGCATCGCTC
TCCCAGTGTCGTTCGAGTTTCATGGTATACGCCAAGGCTTGACAGCTCGC
GTCGATTGTCTTTTGTGATTTTTACTCCTTCGGAGTAGGACCCATCCCAA
ATAATTCGGAGGGCATATATCTATCTCTATCTACTTAGGATCTTGAAAGA
TCTTAAAATTTCACAACACATGACCAATGGGTAAAGGTCACTGATATGCT
TATGGTATGCTTATTTTTTCACAAAAGTTCTCGATAAACTTATAAACGTT
ATGCTTATAAAAAAACTTACTTGACTTCCTTTCTTTCAAAATTTTACGGT
ATCTCTTATTTTCTACAGAGAATCCCCGCTAGAGTTTGGAAAATACTACA
AGAGGGCTCATCACTAGACTTGCGGACGCTGGTGTACACATTGTGTGTTT
TAGACGGTTATGTGACGTCACTTTATGCTGATTGTGCATCGAAGCGATCG
CTTGTTCCGCTCGCATCCGATGGTTTTCTCAAAGTGGTGGATTATGTAAT
TGGAGAATTTGAGAAAGGAAAAACAGACAACTTTCTATACCATGAGATTG
TGTACCTTCTATCAGAGGTAGGCTAAACCTTTTTCAAACCTCACGACTCC
TAGTAGTAGCAGTCCTGCAGAAAATTAAAAAGATAAAATTCTTTCTACGT
CTGTTTAAGGTTACGTAAATGTTAGGAACGTGATATGAATGCTAAAACAA
CGTTGTATGTCAAGCCANAAATGTTAGGAACGTGATATGAATGCTAAAAC
AACGTTGTGTGTCAAGCCGATCCTAAGAGAGTGTACAAAAACAGGGTTGT
TTCCAGGGCTTGAAATAACGGTCGGACATAAATAGCCCCAAATAGCTTCT
TGTCCGACCAGAAAATCATAATTTTCAAGCTGAAGCAACCCTGATCGGAC
ATATTGTACGACCCACTTGAAATCGTTATTTCGAGTCTTGTGTTTCTGTA
GAAAACATTACGTCATGAATATGATGAAAACATTTTTCCATTTCTTCAAC
AATATTGTTCAGAAAAGCATTCACGCAGTCATTATTGTTATTACTTCTTC
TTTAGGAAATTTACAGTTTCCAAAACGAGCCAAACCCAATCCGAGAATTA
GCTTTAGACATTGTTTGTCGGCCAGCTGCCAATCATGCTATCAAATCACT
TTCTATTGGTTCAATACAAATCCCTATTCCACCAATCAACGTTCCACCAC
GTGACTTTGCAACTTGGCTTGATAAATATTTCACCAAATGGTTGCAAGAA
AATTCTCCAATTGAATTAGAAGTTTGCCAAACAAAATGGCTGAGATTTAT
CCACACCGAAACGTAATATTTTTTGATTTTGTGTTTAAATTTTCCCAGGA
AAATACAGTATGTCCCAAAAAAAAGCGGACAAATTGTTATATAAAGTGTA
AAATCTTCGAAACTCATTATCTAAACTGGAATAATTGAAATAAGAATAAA
ACTCTTTGTTCAATCAATAGATATTCAATTCTCAAGATGATTGAATAGGT
TTTTGAGATTGAAATGTCAAGTATACAAGCATAAATTATGAGGATTTAAC
TTTATATAAAGGTTTGACCGTTTTTTTCGGGACACGCTGTATAACCCATA
CAAATAATAATACCCATTATAAGGGTAGTTTTTTTTAGTGAGGATCAATT
ACCCGGTAAGAGTGTAAAAAAAAGTTAGGAAAACGATTTTTTAGATTTCG
TGGAAAGCTACAAGCATGGTCAAAATATTTTGGACCCTCAGATCCTAAGG
TTAGTCTTAAGTCTTGTGTTAAAATTCAAAGCTAAAATTTTATCCTTCCA
ACCTAGCTTAGAGCACTTCCAAATCGTTTGTGGTTTTTAAAATTCGTGGA
AATTTCCCGTTTTTCAAAAATTAAGAACAACTGACTCTAAGCATGTGACA
GTCTCTTTTTTGTTTTTTTCAGATCCAAACGTTTTTGTGAAGATTTGAGC
TCAGTGTATACCAACCTTAACAACAACACAGCCATCTTACCGTCACGTAT
AATCCAGCCCTTAAAAATTAATGTTCAATCATTGTACGAGAACCTTTTAC
AATGCAAAGAGAACGTTCCAGAACAGATCATTTTAAAAGAACCGCTGACT
GGCTCTAAAGACATGCTAAAGATGTTCTGGAAAAAGGTTTGTTCAGCCAA
TTGGTAGAAAATTGTGACCACTTATTTGTGACCATACTGACCACTTTCCT
ATTTTTTTGTGAAAATATATTCAATCCACTGACCTTTATACATCCCTGGA
CCAAGTTTCTCAATACCGGCAAAACATAATCTTTGATCGGAGTTTTTTGA
AAAGTGGTACCCTAATGGCGGCACTACTCAATAGCGGTGTAAATGCATCG
AGAGCGCTAAGGTCTACTTTTCCTCAAATACTTTTGATGATGTAGCGCCG
TTAGACGTTAATTTTTGACATTGCAATGGCTTCTTCTCGGGTACCAATTC
CAAAAAACTCCAATCAAAGATTGCGGATATAGCTTGGTCCAGGGATATAT
AAAGGTCAGTGGTTTAATCAAATGCGTTATTTTTGAATACTTCTTTCATA
ATAAGCTTCTTTTGCAGCATTGAATTAAATTCTTTATTATAAGTATATAC
AAAGAGGGGGGGGTCGGTACTAGAATCTTAGACATGTTGTTTAGAGATGT
GGTGGTATATCCAAAAACTAAAAAATATTTTAGTACCACAGAGTACCAAA
ATACTAAAAAGGTGGTGTACAGACTAAAAGTACTTTGTACTAAAATTAGT
GTATTTCATCATTTTTTGAATCTTTTTCAGAATTGCTGTGATTTTCAGAA
TTTTTTTCATTTCAAGAAAGTTTCCCAAGATTAACCATTTTTGCAATCAT
TTTTTTAAGTTGTTAATGCTCAGTTGCTATAGGTGTATAGTGACCTAGTG
AACCGTAAAAATAGTGTGGTCGTGTTACAAAAATACAGGCTGTTTGTAGG
AAAAGAATAAGATCCAGCTGAAACTTTCTCCAGACCTTCTCTATAGAATG
GTTATGCCTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
TGGAGAAAGTTTCAGCTGGATCTTATTTTTTTCCCTTAAATTATGCTAGA
CAACCCCACTAAAATGGCAGATGAGAAGTTGCCCCCTTGGTAACTCACCT
ATTAGAAACCATTAGAAGGCAACTTCCCAGCTGCCATTTTACGATTCATT
AAAAGTCCGGTTATTTTCAACTCTTTACCTTTGACACCTTTACTCAGGAG
TGCAAGCATTTCAACGAGAAGATTTTACAAATCAACGAAATGATCAGTGT
GGTGGAGAAAAACATAGCTGGTGGAGAGCGTGTTTTACCACAAAAGTATC
ATGGAGATGTCATTGCATTGTCTTCTGGATATGCTCCTTCCTCTGTGTTG
CCCAACAATCGAAATCAAAACATGAATGACCTCAAGAAATGGTTAAATGG
TGAGATATTAATTACTGTACTTTACTTCGGCAAAAGTTACTTTTTGATCT
GGAATTCTTTGGTGTAGCGTCTTGGCAGGGGAACGGTCTGGAAGGTGCGG
ATTTTTTTCAAGGGCTTCTTTTCTTTGCTCATTTCTACACCTTGCTTTGT
GTTAACCCAAAAAAAATATTGAAAAATTGTCGCGCTGGCCTCCCTCGCGT
AGCGTTCAAACTTATTTTTCCACGCATTCACGCAAAAAATTTTCGCAATT
CAGGCATTCACGCAAGTTTTTCTCGAAATTCACGCAAACCCAATTTTTTG
GGAAATCGGGGAAATTTTCGGAAAAAATCGGGGAAAATGTCAAAAATAGA
GGTCTTGCACATTTCGCTAAGTTACGTAATTTACGTAATTTCCGCCATTT
TGGAGTAAAACGTTCGATTTGCATAAAAAAGTATGACAAGGCTGTACTCG
AGAAATTATTCGACCGGATCTGGTCATGCACTTGAGAAAAACTTAACTCA
GTAGTGATTTTTTCCTGTAGACCTGTACACCGTGGTTGGTAGCGTCATAA
GAAGCCCCCAAATAGAAAGCGTTACGTAATTTTTCAACTTTAGTCACATA
CCATCACGCAAGATATTTGATTATTCTAACTTGTCACGTTCTTTTGTAAA
AGGTGAAGCTTCTGCAGTTAACGTATCGCGATAGTAAGTGAAAAGATATG
CGCAGCAGGAATTTTTGTACAAAAATAGCTTAAACATAATCCAAAATAGG
TCAAACAAACTCGAGTATGACACCATGATGCTTAGCTCAGGGGTAAGGAG
GCGCAACCATAGTTTACGCAGAAAGGAAATTTTTGCATTTCTGTCACTCG
CGTTTGGCTAAAAATGCTCTCTTTAACACCATTGAAAAATAATGTAGTCT
AAATTCGTTAAAGGCAAGGTACGATCGCTTGATAGCTTGTAAAATGAGGT
AAAAAAATGAACATTTGTTGCGAGCGAAGCGATCAAAAAATTTAAAAAGA
AAGGTTTTAATCAGGGCTCGCGAATTAATTTCCTAACGTGGAGGGGCCGA
AAAGATAGTGGACTAAGGAGGCGCAACCATGTTTTGCGCCGACAGGAGAA
AATTTCTATTTTAACCCTCTGATGTGCTTAAATACGACTCTATTTCAGAC
TAATTTTGCCAAGAAATCAGGTTATCGAAAGTCTACATCATGGGTAAAAA
TTTCTTTG
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00041577TCONS_00041577Clytia hemisphaericatranscript
TCONS_00041576TCONS_00041576Clytia hemisphaericatranscript
TCONS_00041575TCONS_00041575Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00041576-proteinTCONS_00041576-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002920supercontigsc0002920:5582..15189 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.86	2.51	5.9	5.27	6.89	5.78	4.32	6.03	3.54	3.51	3.77	3.83	1.87	1.86	1.08	1.42	0.9	1.12	1.41	1.25	1.77	1.44	1.29	1.5	14.06	11.81	2.4	2.38	0.99	1.39