|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00041575 ID=TCONS_00041575|Name=TCONS_00041575|organism=Clytia hemisphaerica|type=transcript|length=2085bp ACGAAATGTTTACACTTCAACATCACAAAAGCTTTGAAGACGGTTATGTG ACGTCACTTTATGCTGATTGTGCATCGAAGCGATCGCTTGTTCCGCTCGC ATCCGATGGTTTTCTCAAAGTGGTGGATTATGTAATTGGAGAATTTGAGA AAGGAAAAACAGACAACTTTCTATACCATGAGATTGTGTACCTTCTATCA GAGGAAATTTACAGTTTCCAAAACGAGCCAAACCCAATCCGAGAATTAGC TTTAGACATTGTTTGTCGGCCAGCTGCCAATCATGCTATCAAATCACTTT CTATTGGTTCAATACAAATCCCTATTCCACCAATCAACGTTCCACCACGT GACTTTGCAACTTGGCTTGATAAATATTTCACCAAATGGTTGCAAGAAAA TTCTCCAATTGAATTAGAAGTTTgccaaacaaaatggctgagATTTATCC ACACCGAAAcatcCAAACGTTTTTGTGAAGATTTGAGCTCAGTGTATACC AACCTTAACAACAACACAGCCATCTTACCGTCACGTATAATCCAGCCCTT AAAAATTAATGTTCAATCATTGTACGAGAACCTTTTACAATGCAAAGAGA ACGTTCCAGAACAGATCATTTTAAAAGAACCGCTGACTGGCTCTAAAGAC ATGCTAAAGATGTTCTGGAAAAAGGAGTGCAAGCATTTCAACGAGAAGAT TTTACAAATCAACGAAATGATCAGTGTGGTGGAGAAAAACATAGCTGGTG GAGAGCGTGTTTTACCACAAAAGTATCATGGAGATGTCATTGCATTGTCT TCTGGATATGCTCCTTCCTCTGTGTTGCCCAACAATCGAAATCAAAACAT GAATGACCTCAAGAAATGGTTAAATGGTGAGATATTAATTACTGTACTTT ACTTCGGCAAAAGTTACTTTTTGATCTGGAATTCTTTGGTGTAGCGTCTT GGCAGGGGAACGGTCTGGAAGGTGCGGATTTTTTTCAAGGGCTTCTTTTC TTTGCTCATTTCTACACCTTGCTTTGTGTTAAcccaaaaaaaatattgaa aaattgtcGCGCTGGCCTCCCTCGCGTAGCGTTCAAACTTATTTTtccac gcattcacgcaaaaaattttcgcaattcAGGCATTCACGCAAGTTTTTCT CGAAATTCACGCAAACCCAATTTTTTgggaaatcggggaaattttcggaa aaaatcggggaaaatgtcaaaaatagaggtcttgcacatttcgctaagtt acgtaatttacgtaatttccgccattttggagtaaaacgttcgatttgca taaaaaagtatgacaaggctgtactcgagaaattattcgaccggatctgg tcatgcacttgagaaaaacttaactcagtagtgattttttcctgtagacc tgTACACCGTGGttggtagcgtcataagaagcccccaaatagaaagcgtt acgtaatttttcaactttagtCACATACCATCACGCAAGATATTTGATTA TTCTAACTTGTCACGTTCTTTTGTaaaaggtgaagcttctgcagttaacg tatcgcgatagtaagtgaaaagatatgcgcagcaggaatttttgtacaaa aatagcttaaacataatccaaaataggtcaaacaaactcgagtatgacac catgatgcttagctcaggggtaaggaggcgcaaccatagTTTACGCAGaa aggaaatttttgcatttctgtcactcgcgtttggctaaaaatgctctctt taacaccattgaaaaataatgtagtctaaattcgttaaaggcaaggtacg atcgcttgatagcttgtaaaatgaggtaaaaaaatgaacatttgttgcga gcgaagcgatcaaaaaatttaaaaagaaaggttttaatcagggctcgcga attaatttcctaacgtggaggggccgaaaaGATAGtggactaaggaggcg caaccatgttttgcgccgacaggagaaaatttctattttaaccctctgat gtgcttaaatacgactctatttcagactaattttgccaagaaatcaggtt atcgaaagtctacatcatgggtaaaaatttctttg Run BLAST on NCBI transcript from alignment at sc0002920:5582..12996- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00041575 ID=TCONS_00041575|Name=TCONS_00041575|organism=Clytia hemisphaerica|type=transcript|length=7415bp|location=Sequence derived from alignment at sc0002920:5582..12996- (Clytia hemisphaerica) ACGAAATGTTTACACTTCAACATCACAAAAGCTTTGAAGGTTAGTATATT
GGCCTGTCTCTGAATCAGAAGTTTTTTCGTATGTATTTTCTTTGCTCTTC
AGGTACCTTCAGGTTATTTTACAACAGACTTAAAATATGCAAATTTAAAG
CTAACAAGAAACTGACAATCGACTTTTAACCATACATTCATTATCATCGG
TAGTCTAGCTGATATACAGTTGAAAAGATACGTGAAAAATAAGCTTAGCT
ATATTTAGGAATCAATCTCATGTTATGCTTGTGATATGCTTATTTATCCT
GAAATCTTTCAGTACATTCTTCAAAAGGTTAAAAATGAGCAATTAAGAAT
ATTATTGGTTTAGTGTAAATACTTGAGATCTTGGGATACTTGGTAAAAGG
TAGTGGTATAATGGCTATTATCCTGGACTCGAGCCTGGGAGGCCCGAGTT
CGTTACCCACCCATTGAGTTTAAAGCCCGGATGGCTAGAGTAGAATCTCT
ATTCTTTCTCAGGCAAGAAAAAGTGAAGCCATCCAGAACGCGCCTAGAAC
GCGCCGTAATTATGACGATGGATTGTATCTATTGGTTTCTTTGTTTTTGA
GGATTGTATTTTTTTAAATCAAGCGATAGACTTTACTTTCAATCTAGCGT
TTGTGTAAAAACCACGCGCGGGCGTTTTGGACTTACCCCGGTGGGGTGGA
GGTCCTATAAATTCACCTCTGTCCGTTCGTCCGTCCGTCCGTTCGTTACC
AGCTTTTCTCGAGATTGAATCATAGGAATCATCTGATTTTTGGTACAAAG
GTGCAAAATGGTGGTGGCCAAAATGTGACGGAGCCCGATTTTCGAAAAAA
AAATTTTTTGGCTAATTTCGGCCAAAAACGGCTAAAAACGGGTTTTTTGG
ACTTTGTGAAAAATTGGATCATTAAATTTTTTTGATTTTTTACATGGAAG
TAGGGTACCATCATAGGTAAAGGATGGCTCAAGCAGGTTTTTGCAAAAAA
ATTTATTTGGCTTAAAAAACGCATGTTTATCTATAAGAATCACTATTAAT
AAGCATACAATTTTTTTTATGAGATATATATTTTTTTTTGCTCATGAGGG
CTTACTTTTAAAGAATATGTGTGTTAGCCATGACATTTTGGTTGCTTTGC
GTGTTTTTTTATAGAAAAACTGGCCAAATTCGATAATTTTTTATAAGCAC
ATTATCAATTACTTAGGTATTAGCTTTTGTCGAGATTGGTTCTTTCATTC
TTTATGACTTTTTGCACAAAGATGCATAACTTTAAACCCTCGAATGTGAC
GGAGTCCAATCTTTGAAAAAAAAAATGTTTTAGGGCAAATTTGGGCCAAA
AAACGGCTAAACAACGGGTTTTTTGGACTTTGTGAAAAATTGGATCGTTG
ATTTTTTTTGCATGAAAGTAGTGTACCATCATAGGTAAAAGATGGCTCAG
GGAGATTTTTGCAAAAAAGATTTGTTGGCTAAAAAAACGCATGTTTATCT
ATAAGAATCACTATTAATAAGCATACATCAATGTTCTTAGCCAAATTACT
CAATTTTTTGATGAGATAGATGTTTTTTGCTAACGAAGTCTTGAATATGA
AAGAATATTTCAAGGGCATGAAATTTTGGTTTCTAAACGTTTTTTTAATA
AGAAACAAAGGACTAATTTTAATAAATCGTCACTATTTGTGTTCTGAATG
ATTGTTTAACGTTCATATCCTCACGTAGATATCAATTATAAATGTGTTAA
ATGCATAACCAGGTAGGTCCATAAAAGTATCACTTGTTGAATGGGAAATT
AAGTGGCTTCATTTCCCATCCTGGAGTCTCGAGTTTAGCCCTTCGGGCTT
GGAAGTCAATATACCCACCGTGTCGCTACTTTTCGCTTGGCAAGTGAATA
TTCCTTTGCCCGGGTCAACCCATGCCATGTGAGGAGAATTGGGTACCATT
ACTACATTACTATATAATATATGAGTGTGGGTAGACTTGGGTAGATAAGA
CTGGCATTGTGACGTGCCTTGGCACTCACAAAGTTCGACCTCGCGTGAGC
ATCGCTCTCCCAGTGTCGTTCGAGTTTCATGGTATACGCCAAGGCTTGAC
AGCTCGCGTCGATTGTCTTTTGTGATTTTTACTCCTTCGGAGTAGGACCC
ATCCCAAATAATTCGGAGGGCATATATCTATCTCTATCTACTTAGGATCT
TGAAAGATCTTAAAATTTCACAACACATGACCAATGGGTAAAGGTCACTG
ATATGCTTATGGTATGCTTATTTTTTCACAAAAGTTCTCGATAAACTTAT
AAACGTTATGCTTATAAAAAAACTTACTTGACTTCCTTTCTTTCAAAATT
TTACGGTATCTCTTATTTTCTACAGAGAATCCCCGCTAGAGTTTGGAAAA
TACTACAAGAGGGCTCATCACTAGACTTGCGGACGCTGGTGTACACATTG
TGTGTTTTAGACGGTTATGTGACGTCACTTTATGCTGATTGTGCATCGAA
GCGATCGCTTGTTCCGCTCGCATCCGATGGTTTTCTCAAAGTGGTGGATT
ATGTAATTGGAGAATTTGAGAAAGGAAAAACAGACAACTTTCTATACCAT
GAGATTGTGTACCTTCTATCAGAGGTAGGCTAAACCTTTTTCAAACCTCA
CGACTCCTAGTAGTAGCAGTCCTGCAGAAAATTAAAAAGATAAAATTCTT
TCTACGTCTGTTTAAGGTTACGTAAATGTTAGGAACGTGATATGAATGCT
AAAACAACGTTGTATGTCAAGCCANAAATGTTAGGAACGTGATATGAATG
CTAAAACAACGTTGTGTGTCAAGCCGATCCTAAGAGAGTGTACAAAAACA
GGGTTGTTTCCAGGGCTTGAAATAACGGTCGGACATAAATAGCCCCAAAT
AGCTTCTTGTCCGACCAGAAAATCATAATTTTCAAGCTGAAGCAACCCTG
ATCGGACATATTGTACGACCCACTTGAAATCGTTATTTCGAGTCTTGTGT
TTCTGTAGAAAACATTACGTCATGAATATGATGAAAACATTTTTCCATTT
CTTCAACAATATTGTTCAGAAAAGCATTCACGCAGTCATTATTGTTATTA
CTTCTTCTTTAGGAAATTTACAGTTTCCAAAACGAGCCAAACCCAATCCG
AGAATTAGCTTTAGACATTGTTTGTCGGCCAGCTGCCAATCATGCTATCA
AATCACTTTCTATTGGTTCAATACAAATCCCTATTCCACCAATCAACGTT
CCACCACGTGACTTTGCAACTTGGCTTGATAAATATTTCACCAAATGGTT
GCAAGAAAATTCTCCAATTGAATTAGAAGTTTGCCAAACAAAATGGCTGA
GATTTATCCACACCGAAACGTAATATTTTTTGATTTTGTGTTTAAATTTT
CCCAGGAAAATACAGTATGTCCCAAAAAAAAGCGGACAAATTGTTATATA
AAGTGTAAAATCTTCGAAACTCATTATCTAAACTGGAATAATTGAAATAA
GAATAAAACTCTTTGTTCAATCAATAGATATTCAATTCTCAAGATGATTG
AATAGGTTTTTGAGATTGAAATGTCAAGTATACAAGCATAAATTATGAGG
ATTTAACTTTATATAAAGGTTTGACCGTTTTTTTCGGGACACGCTGTATA
ACCCATACAAATAATAATACCCATTATAAGGGTAGTTTTTTTTAGTGAGG
ATCAATTACCCGGTAAGAGTGTAAAAAAAAGTTAGGAAAACGATTTTTTA
GATTTCGTGGAAAGCTACAAGCATGGTCAAAATATTTTGGACCCTCAGAT
CCTAAGGTTAGTCTTAAGTCTTGTGTTAAAATTCAAAGCTAAAATTTTAT
CCTTCCAACCTAGCTTAGAGCACTTCCAAATCGTTTGTGGTTTTTAAAAT
TCGTGGAAATTTCCCGTTTTTCAAAAATTAAGAACAACTGACTCTAAGCA
TGTGACAGTCTCTTTTTTGTTTTTTTCAGATCCAAACGTTTTTGTGAAGA
TTTGAGCTCAGTGTATACCAACCTTAACAACAACACAGCCATCTTACCGT
CACGTATAATCCAGCCCTTAAAAATTAATGTTCAATCATTGTACGAGAAC
CTTTTACAATGCAAAGAGAACGTTCCAGAACAGATCATTTTAAAAGAACC
GCTGACTGGCTCTAAAGACATGCTAAAGATGTTCTGGAAAAAGGTTTGTT
CAGCCAATTGGTAGAAAATTGTGACCACTTATTTGTGACCATACTGACCA
CTTTCCTATTTTTTTGTGAAAATATATTCAATCCACTGACCTTTATACAT
CCCTGGACCAAGTTTCTCAATACCGGCAAAACATAATCTTTGATCGGAGT
TTTTTGAAAAGTGGTACCCTAATGGCGGCACTACTCAATAGCGGTGTAAA
TGCATCGAGAGCGCTAAGGTCTACTTTTCCTCAAATACTTTTGATGATGT
AGCGCCGTTAGACGTTAATTTTTGACATTGCAATGGCTTCTTCTCGGGTA
CCAATTCCAAAAAACTCCAATCAAAGATTGCGGATATAGCTTGGTCCAGG
GATATATAAAGGTCAGTGGTTTAATCAAATGCGTTATTTTTGAATACTTC
TTTCATAATAAGCTTCTTTTGCAGCATTGAATTAAATTCTTTATTATAAG
TATATACAAAGAGGGGGGGGTCGGTACTAGAATCTTAGACATGTTGTTTA
GAGATGTGGTGGTATATCCAAAAACTAAAAAATATTTTAGTACCACAGAG
TACCAAAATACTAAAAAGGTGGTGTACAGACTAAAAGTACTTTGTACTAA
AATTAGTGTATTTCATCATTTTTTGAATCTTTTTCAGAATTGCTGTGATT
TTCAGAATTTTTTTCATTTCAAGAAAGTTTCCCAAGATTAACCATTTTTG
CAATCATTTTTTTAAGTTGTTAATGCTCAGTTGCTATAGGTGTATAGTGA
CCTAGTGAACCGTAAAAATAGTGTGGTCGTGTTACAAAAATACAGGCTGT
TTGTAGGAAAAGAATAAGATCCAGCTGAAACTTTCTCCAGACCTTCTCTA
TAGAATGGTTATGCCTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNTGGAGAAAGTTTCAGCTGGATCTTATTTTTTTCCCTTAAATTA
TGCTAGACAACCCCACTAAAATGGCAGATGAGAAGTTGCCCCCTTGGTAA
CTCACCTATTAGAAACCATTAGAAGGCAACTTCCCAGCTGCCATTTTACG
ATTCATTAAAAGTCCGGTTATTTTCAACTCTTTACCTTTGACACCTTTAC
TCAGGAGTGCAAGCATTTCAACGAGAAGATTTTACAAATCAACGAAATGA
TCAGTGTGGTGGAGAAAAACATAGCTGGTGGAGAGCGTGTTTTACCACAA
AAGTATCATGGAGATGTCATTGCATTGTCTTCTGGATATGCTCCTTCCTC
TGTGTTGCCCAACAATCGAAATCAAAACATGAATGACCTCAAGAAATGGT
TAAATGGTGAGATATTAATTACTGTACTTTACTTCGGCAAAAGTTACTTT
TTGATCTGGAATTCTTTGGTGTAGCGTCTTGGCAGGGGAACGGTCTGGAA
GGTGCGGATTTTTTTCAAGGGCTTCTTTTCTTTGCTCATTTCTACACCTT
GCTTTGTGTTAACCCAAAAAAAATATTGAAAAATTGTCGCGCTGGCCTCC
CTCGCGTAGCGTTCAAACTTATTTTTCCACGCATTCACGCAAAAAATTTT
CGCAATTCAGGCATTCACGCAAGTTTTTCTCGAAATTCACGCAAACCCAA
TTTTTTGGGAAATCGGGGAAATTTTCGGAAAAAATCGGGGAAAATGTCAA
AAATAGAGGTCTTGCACATTTCGCTAAGTTACGTAATTTACGTAATTTCC
GCCATTTTGGAGTAAAACGTTCGATTTGCATAAAAAAGTATGACAAGGCT
GTACTCGAGAAATTATTCGACCGGATCTGGTCATGCACTTGAGAAAAACT
TAACTCAGTAGTGATTTTTTCCTGTAGACCTGTACACCGTGGTTGGTAGC
GTCATAAGAAGCCCCCAAATAGAAAGCGTTACGTAATTTTTCAACTTTAG
TCACATACCATCACGCAAGATATTTGATTATTCTAACTTGTCACGTTCTT
TTGTAAAAGGTGAAGCTTCTGCAGTTAACGTATCGCGATAGTAAGTGAAA
AGATATGCGCAGCAGGAATTTTTGTACAAAAATAGCTTAAACATAATCCA
AAATAGGTCAAACAAACTCGAGTATGACACCATGATGCTTAGCTCAGGGG
TAAGGAGGCGCAACCATAGTTTACGCAGAAAGGAAATTTTTGCATTTCTG
TCACTCGCGTTTGGCTAAAAATGCTCTCTTTAACACCATTGAAAAATAAT
GTAGTCTAAATTCGTTAAAGGCAAGGTACGATCGCTTGATAGCTTGTAAA
ATGAGGTAAAAAAATGAACATTTGTTGCGAGCGAAGCGATCAAAAAATTT
AAAAAGAAAGGTTTTAATCAGGGCTCGCGAATTAATTTCCTAACGTGGAG
GGGCCGAAAAGATAGTGGACTAAGGAGGCGCAACCATGTTTTGCGCCGAC
AGGAGAAAATTTCTATTTTAACCCTCTGATGTGCTTAAATACGACTCTAT
TTCAGACTAATTTTGCCAAGAAATCAGGTTATCGAAAGTCTACATCATGG
GTAAAAATTTCTTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
| TCONS_00041575-exon-sc0002920-1575043694:12958..12996 | TCONS_00041575-exon-sc0002920-1575043694:12958..12996 | Clytia hemisphaerica | exon |
| TCONS_00041575-exon-sc0002920-1575043694:10373..10536 | TCONS_00041575-exon-sc0002920-1575043694:10373..10536 | Clytia hemisphaerica | exon |
| TCONS_00041575-exon-sc0002920-1575043694:9628..9884 | TCONS_00041575-exon-sc0002920-1575043694:9628..9884 | Clytia hemisphaerica | exon |
| TCONS_00041575-exon-sc0002920-1575043694:8804..9017 | TCONS_00041575-exon-sc0002920-1575043694:8804..9017 | Clytia hemisphaerica | exon |
| TCONS_00041575-exon-sc0002920-1575043694:5582..6992 | TCONS_00041575-exon-sc0002920-1575043694:5582..6992 | Clytia hemisphaerica | exon |
| TCONS_00041575-exon-sc0002920-1510915933:12958..12996 | TCONS_00041575-exon-sc0002920-1510915933:12958..12996 | Clytia hemisphaerica | exon |
| TCONS_00041575-exon-sc0002920-1510915933:10373..10536 | TCONS_00041575-exon-sc0002920-1510915933:10373..10536 | Clytia hemisphaerica | exon |
| TCONS_00041575-exon-sc0002920-1510915933:9628..9884 | TCONS_00041575-exon-sc0002920-1510915933:9628..9884 | Clytia hemisphaerica | exon |
| TCONS_00041575-exon-sc0002920-1510915933:8804..9017 | TCONS_00041575-exon-sc0002920-1510915933:8804..9017 | Clytia hemisphaerica | exon |
| TCONS_00041575-exon-sc0002920-1510915933:5582..6992 | TCONS_00041575-exon-sc0002920-1510915933:5582..6992 | Clytia hemisphaerica | exon |
| TCONS_00041575-exon-sc0002920-1491911889:12958..12996 | TCONS_00041575-exon-sc0002920-1491911889:12958..12996 | Clytia hemisphaerica | exon |
| TCONS_00041575-exon-sc0002920-1491911889:10373..10536 | TCONS_00041575-exon-sc0002920-1491911889:10373..10536 | Clytia hemisphaerica | exon |
| TCONS_00041575-exon-sc0002920-1491911889:9628..9884 | TCONS_00041575-exon-sc0002920-1491911889:9628..9884 | Clytia hemisphaerica | exon |
| TCONS_00041575-exon-sc0002920-1491911889:8804..9017 | TCONS_00041575-exon-sc0002920-1491911889:8804..9017 | Clytia hemisphaerica | exon |
| TCONS_00041575-exon-sc0002920-1491911889:5582..6992 | TCONS_00041575-exon-sc0002920-1491911889:5582..6992 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
| sc0002920 | supercontig | sc0002920:5582..12996 - |
Blast
The following BLAST results are available for this feature:
|