XLOC_024580 (gene) - C. hemisphaerica

Overview
NameXLOC_024580
Unique NameXLOC_024580
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0002426:14644..22835+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_024580 ID=XLOC_024580|Name=XLOC_024580|organism=Clytia hemisphaerica|type=gene|length=8192bp|location=Sequence derived from alignment at sc0002426:14644..22835+ (Clytia hemisphaerica)
TGATCTTTCAAAAGCAATCCAATTTTTATGATTTACTTGTTGCATAAAAA
GTATAGATATTTGTTTTAATTCTTAAATTCAACACTTTTAACCTCGAAGC
AATTCAGACCTCAATTCAATGTTTTACCTGGCTTTTAAGGTAATAAAAta
atgtcatttttcattttttgtgaagtAAAGCAATGGTTTTTCATATTAta
tagaccagcgtccgagattcaaaaaaggccttaaaaatggttttcgtagg
gcaccccttagatctaaatctcgagatattttggtttaaatattgaaaat
tatcgatattttttgctgagtcagcagtttttcagcatatttatccACCT
TAAAAGTGAATTANTCATTTTTCCTTGTCAACATCAATTTTCAGGTACAT
ATAGGTCCATTCAACATGTAGCTTGTTTTTCTTATTTGTTTTGTCCATCC
ATTTTAGAGCGCGCTCAAGAAGAGCATCTCGTAGACGTAGTGTAAGttct
tttctattcaatttttttctgatttattaGATTTTTTACACAATATACTT
CTAAATTAGGAGAGAACGAAGGAAGTGACAAaatcaaacttaaaattttt
ctttttactttgttaGACCTGAGACTTTGATTGCTTTGTTTTAGTGCTAC
ACCTACTCTGTCAGCGCTCAGTTACCTATTGCCTANcaaaacgtcgattt
ttcgccttaaaaatgccatttctcggcactaggtggtcgaaacttaacaa
ataaccccattttctttatctacttttcacgctgaatccgttggtagtct
cagatatttgattttcagacttcaaaAANATTGCCTATCCAAGCTACTCG
TTCTCTGATTTATGGAACCTAACACCTTTGAATTGAAAGATGAAGGCTCT
ACCAATTTGTATAATATACATTTTAGATCTGAGTCAGTCTATTATATAAA
ACTATCTTTGATTTTTGTAGTGTTTGAAGACAATTGTTGGAAATCAACAG
GtaatgtttgatttttcgcCGTTTctatttgacttttaatataaccATAC
TTGGTTTGGGCTATACATGCCTCCTTTTCATGAGATAAATTAGAAGATTT
GCAGCATAATACATTCTAATAGCAACATTTTGCTAATGTTGTAGTCGAAG
ttctataaaaataaaatatNGGTCTGTATATTATCTTTATCCATAGATCA
ACAAATCTCCAACCAAGGCAGAAAAGAGTTAGTTTTGACCATTACAGGAG
TATGAAGTAAGCTATATTCATTCAACCCTGGTTCCCTCAGAAGAGTTCAT
TTACAATGCTAAATGGAacttgaaaagttttgtttcatGACAGTTGAGGG
AAAATATTTCTTGAGCAGTCCTGTGCGATATATTATAAAGACCGCTCTGG
TCTgcattttattcattttgtatAGAGCCTTATATCGAAAGATCAGTTTT
TACATCAGACTTCGTGCAGTAAAAATGCCACTTTGTTACATCCTGAAtag
gtttttccaaaaaaacttcacttttcaactttttattataatatctagca
actttgagaaaatgttttttcgtgTCATGTTTCTATTCTTATTTCCTGTA
GCTTGCATTTGTTACAGTTACTTTAACTAATTTTTTCCAATTATTTacag
gatttttgaaaaagacagCCATGAAAAAGGTGTGTCTCGGTTTTTCATTT
CAAGTGCTGGATTTTTCTTTTACTCtcacagggctgcaaataaatatttt
tagtcaatcggacatcatgtccgacagaaatgaaatcctgtcggtcaaac
tcaaaatcctgtcggtcattcaatgtataaatttttttaagttacagaga
aagcgagtaggaaaaataaaagtgatcttagaaacacccttggaagttac
gaagaaagcaagttgataaaagttaacttagaaacactcttaaaagtttt
aagaagaaagcgagttgataaaagttaacttagaaacactcttgaaagtt
atgaagtaagcacaagttgatgaaaatggtcttaaaaaaactcttgaaag
ttacaaagaaagcgaattgataaagtgatcttagaaacaaagaaggttac
gaagaaagcaagttgacaaaagtaatttagaaacacccttaaataagtta
caaagaaagcgggttgataaaagtgatcttagaaacaaagaaagtaacga
agaaagcaagtcgataaaagttaacttagaaacaccctgaaagctacaaa
ggaagcgagtattaaaagaataggctaagtaagagacaggggtgtaagag
atttattttcaactcttaagttaatggtttattccttttttcactcggac
atcatgaccgacacaaaagattttcagtcggtcaaatagctttttcagtc
ggacattgaccgatgaccgacgcttatttgcagccctgctctcaggtacc
taatagccgtccccccaattaattttttgaaaattatccacccaggacat
tcttattccaacccccgctaattaatttttgggaaaatgtttttgaaagt
tccctcttttgtcctaatttttGCTGTATTAGActccttttaaaattttc
caccctgaacatttttattctaaaaagGGGGCCGCCCTGCccgcttctta
aattttgatacaaccccccccccccggctattcgATTACTGTGAGTACCT
CTGCTTTTTTTTAAGACTTACTACTTTAACTGGATTAAATTTNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNgagggctaataatcaaactgcaagggca
gaattaatgacaacaacgaacgaaaacttaacgctattactattacaATC
CATATctgacattcaaacaacgtttttctAGCGTCAGTTAAGTCTTTTtg
cttcaatgcaatgtcttcaacaagttttgagtacccttgcgagcaggccg
caaatgaccaaaaagtgtttttttctgacgtcggtttagtctcaccgctt
caatgcaacgacttcaataaagttccgagcgggccgcaaatgccgcaaat
gacgttatcgccctataaccagggcggttaatgatatttcagccctctat
AGTGCGACGCCTTATttttctcagcgcgggtatgactatttgagtcatag
aacccttcaataccgcccgccattcgaatctttaatggcttacttaatga
ccgctatatggataataatagccattttttgccataaatggagacttgga
actagtttctcccccaaaaatacaattttaaaagttttgtggtggattta
atttcgcgaatcaggaatctcacgcgtgttcgcgagttttaatttcgcaa
aaatgggaaaaattcgcgaaatcgcgaaatttaatctcgcgaaaattaat
ctgaTTAAAGTACCCATTAATTCAATTTGAGGAACCGTTAGCAATAGATT
TAGTTTTTTATATCATactcaataaaaattcaaaacaaactaaACAATTT
TCCATCATCAAGCTAAAAACATACTTTAGGCTATGTCatatctttctttg
ttttgagcGGCCGTATCCTACAAGTAGGTGAAATCTCGGTGGGGTGACTA
GTGGCCAACccatagcagtgcctatagaccaagagtaaggcctaaaagcc
tggaactgtctattgtgtagactaacaCACCTGAACTAATTGACAattgt
tgttttgtttacttttagaTGAAGAGGATGAAAAGGTGAGTTTACAACCC
TTCTGTGCTCATCCCTGAACCTCAATATTACTATTTCCGCAACACGTACA
GGTGTATCAGAAATTGATTTCTACTTGTGTTTCTCTATTTTCGTTTGTCA
GCTTGACGTAGTATTTCCTTTATAATTTTATAACTCTTTCTAGGTTTATT
CAGACTTCAGACTATAATGGATATGTCTTGTGTTTAAGCAAAAGGTCTTT
GTCTAGGGTTGaagattattttgataattgcccctttttttaaatgctCC
CCCCCCCTCGAGTAAACACTCCTACTgcctaaaatccaaaaaaaggtGAA
CTccagggcgtttattcgaagtgatATGGTATATAATTTGTTAGAAGGAG
TGACCTATAGTAGGGTTGAtaaagaatgaatgaataaatgatTACTGGTT
CATTTTTATCTCCTTATTATTGTTTTTTCTCATAGACTGAATTCTTGGAT
AAGACGTCTCACGCTGAACACGACATGGACCTCACCAGACTAACAGAACT
TTCACCCAGTGGGGATGATTTGAATGaaactcaaaaaattcaaaatttct
ttaaattattttctgATGACAAGCCAACTACAAAAAATGGAATGGACACG
ACTCTTGGGATGCCATCTCTACACAGTGAATCACCACATGTAAACAACAA
TAAAACTATCCTCAATAACTATGACGTTATGGACGAGGCTTCTGAAACAT
TTGTGTCTTTCCCTCTAGGTACGGTCTAAGCTGAAAAAGAAACTAAAATC
TCTTCTGCTGACTTCTTGAGTAATTTTAAATCAACCAATGACAAGTCACC
AAAGAAAGATAGCACTATTAACCAGATCTTGAATGCTATTGACACACCAC
CGGAATCCTCCTTAGTCTCAGGTAAAGACTTTCTTGCAAAGCTCATAAGT
CATAAGACACCATCAGAAAGCGATGACCCACTTCCAGGGGCGATCGCTCT
TGAACTTAATAACATAACCACATTAAGCGAAGCTTCAATGGATATTACAG
ATGATGAGAACCAAAGAGAACTATGATGTTAAATCAACTTAACATGTCTG
CTGCTATCAGCCCATCCAGTAACACAAAAAATAGCTTGGAAGCTCATCAA
GAAACTCTCACCAAAGATGATCCTCCTGAAAATCAAACCAACATTGACAA
CAAAAATGTTCAGTTGAcgccaacaaaaacaaactttcgtGACAAATTTG
CCGACTCAAGTGATTTGGTTACTGTTTGTATCACACCTGATATCGAGACT
GATGCATAGCCTGTAGCCCCTTCTACAGAAACACCCTCGTTCcttgaaga
tttcaaaaatatcaatgttgGACCTAAGGCTAACAAGAGTAATGAAACCA
CTGgctcttcctttattatggactTCAAAGGGATGTGTGTGGATAGCCCT
GTAGATAAATCACAAACTGAAATTAGTACTGAAGGACCAAAATCAAGTAC
TCAAATACAAAAAGGATTCTCCGCAACTCCAGTAAGCAGCTACAGAGACT
ATTGTTCAACTTACGGAAAATCACCAAATATCAGCAATATAACTAAAATC
GCACTTGGAGATTCACCAACTAAAACAATCTCTATTCCAGCAACTCAGAC
TCCTATCTTGGTCACACCCAGAAGAAACGCCAAGGAGACTGCCACATCCA
TATCAAATGAAACACCATCTTTATCACATGATAAGCTTGCCCCTAAGGAA
GACATCCACTCAATTTCAcaattagtagggggaaatttgttcgttttttt
gaggtcgctcgacttttttagtcaaagcacttgttatacatttttggaaa
gctaaggggtaggggaatcaaNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNCTCAAATACAAAAAGGATTCTCCGCAACTCCAGTAAGCAGCTACAGA
GACTATTGTTCAACTTTTGGAAAATCACCAAACATCAGCAATATAACTAA
AATCGCACTTGGTGATTCACCAACTAAAACAATCTCTATTCCAGCAACTC
AGACTCCTATCTTGGTCACACCCAGAAGAAACGCCAAGGAGACTGCCACA
TCCATATCAAATGAAACACCATCTTTATCACATGATAAGCTTGCCCCTAA
TGAAGACATCAACTCAATTTCACAATCACAAAATGTCATCTTGGTAACAC
CAAAACGAAGCGTTTCAAAGAAAAGACCAGAAACAGCACCGGTCAGTGAA
GCCAAGTCGACTGGAATTTCGTTAGGTGAAACCTCCGCTTTCGCATCTGT
ACCCATGAAAAGGATAAAGTTATCAAATGAGGCTGAACCGGTCAAACTAC
CCTCAGTGTCAACCATACTTCCAAGGCTTAACCAAACGTCTCCCAAGAAA
AACTCAATAGCACCTTCCAGCCAAGAGCTGGTGGCAAGCAGTCAATCACC
ACAACTTTGTATCCCGACAACTGCCACACCAAAAGCCAACCCTCTTAAAT
TGCTGATGGAACAAAAAGAGGATGAAAATCCAACAATCAATGATATCAAA
ATGGCGTCCCCTCCAAAACAATTTTCATCAAATCTACCTATACCTTCAAC
TAATACAAACACATCAGTCCAGACCAAGCTCTCGTCTCCGACCAAACCTC
TCCCTATCAACACATTGCCTGGAGGATCACCACCTCAGATACTCAACACA
GACACCATATCTTCAATTCAAAATAAGGATACTAACCCACAAAGCCAATT
CAAAGTCGCTGATGAGAAGAAGGATCCACAGAATCGCAGAAAAACGTACA
CTCTGAGCAAAGACCGAAGGTTGACAATCCAAGATGTGATTCTGGCTGGC
AACGAAAAATNTCACTCTGAGCAAGTCAGACTTACCCTTAGTCACCCCTT
CGTCACCTGAGAAAACCAACGTCACCGAGAAACCGAAGAACGATCGACGG
GTGACATTCGTTATTCCACCGAAACCCTCAACGACCGAACAGTCTCTTAC
TGAACAGTCTTCACTCAACGATAAGCCGAAAAACCAGACAATTGTTCTCG
AGAAAGTCGACCAAAGTGAAAGTAAGAAGACAAAAAGCAACAAAGACCGA
AGGTTGACAATCCAAGATATGATTCTGGCTGGCAACGAAAAATGCATTGA
TGATTCAACCAACTTCGAACAAACTCTTGTGTTTAAACCACCCATTGCTA
ATAGTTCAATGATGGTTTTTCCTTCTGATGGCTTGGTGTCAACTGAAATT
ACACCAAAAGCTCCTCCACTATCGACCAAGGAGACTACATCCAATGAGAC
ATTTGTTGTCACTGAGACTAAGCAAAAACCAACCCAAAATCACACCAGTC
AATCGCTTCAGACTCCTGGATCTGCTGAAAATATTGATGACCAGTTTATA
CAGTCTGGAGCAAACGAGGTGCCAATTACAAACAAAACTTTTGTCGTTGA
AGAGCCATCAAAGATGGAGAAGATGTCAAAAACGTTGGAAATGAACTTCA
CTAAAGAAACTCTTGTCGTAGAAAAACCCACAAAGATGTCGAAAACTATG
GAAAAGACCTTCACTAAAGAGACACTGCCTGTAGACGTTTCTTCGCTTGT
TGAGGAACAAGCAAGTTCTTTGGTCTCTCAAGCTATTGCTGAAGCAGATC
TATCCATTGCTAAAGAGAACCAACCTACCCTTCCTAATGAAGAAACATTG
AAGAACGAAATTGTTCAACAGATCATGAGCCAGTTAGCAGTTTCACAAGC
TAACACCAATATTGCAGAATCTGTTCCATCTCAACAAAAAGATGAGATTC
AAAGAATGGTGATGAACATGCTCCAGAAATATAATCTACCAACTAAAGAA
ACAATTACACCTGTTGCCACGGCAGACCAAACTGATAGAGGT
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00040430TCONS_00040430Clytia hemisphaericatranscript
TCONS_00040431TCONS_00040431Clytia hemisphaericatranscript
TCONS_00040432TCONS_00040432Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00040430-proteinTCONS_00040430-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002426supercontigsc0002426:14644..22835 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.23	5.66	6.24	4.56	30.54	25.19	16.11	23.61	11.7	12.88	10.86	8.16	7.04	7.23	3.79	6.17	8.17	7.39	2.62	3.84	3.57	4.61	2.63	3.92	15.35	17.92	3.08	1.7	3.04	2.74