XLOC_023803 (gene) - C. hemisphaerica

Overview
NameXLOC_023803
Unique NameXLOC_023803
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0002113:14175..17719+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_023803 ID=XLOC_023803|Name=XLOC_023803|organism=Clytia hemisphaerica|type=gene|length=3545bp|location=Sequence derived from alignment at sc0002113:14175..17719+ (Clytia hemisphaerica)
TCGACAATATCTTACTTGACGAGAGtggaaagatcaaaatttcagGTAAG
ATTTACTTGgagtttttttaacaaaattcgtTACAAAATTACACTAAACT
CCTTTACTTTTCAAGCTTTACTGCGTACCCAGCTTGAAAAGTAAAGGAGT
TTAGtgttattttttaaaagttctaGAATCTGTTGGAACTGGAACTGCTT
TCAATAATTTTAAGTTGATCATAAGAAATTCATATTTCATATAATGtatc
aatattttattttatttcagatTTTGGCATTTCAAGTTTCCCATCATCAC
GTGATCACCTCTGTGATACATTCTGTGGAACCATGTCTCATATGGCTCCA
GAAGTGATTAGCGGATACAANCATTTCAGATTTTGGCATTTCAAGTTTCC
CATCATCACGTGATCACCTCTGTGATACATTCTGTGGAACCATGTCTCAT
ATGGCTCCAGAAGTGATTAGTGGATACAACGGCACCCGTGATGCCCGATA
TGATGGTCAGAAAGCAGACGTTTGGTCACTGtaagttgattttatttcaa
taatttaTAATAAAAAACCGACCACTACTTTCTGCACTGCATATGTTTGA
TCAAGCCCCTCCCCCTGGGCTGCGAGTTGAGTGCTTTTGCAATTAGGAAC
ACTTAAAACCTTATCTCCTTAGAGACTAAGGTCTAAATCTTTAGAAAGAA
AATGCTGTGTAACTATAGTTCGAACCGTAGCTTTGGTACACCATTTAAAC
CCGTTCAAGTGTCCCAGTCAGAAGTTTTGTTGTTAAATATATTAAATTCA
ATGTATATATCTACAATTTTTTCAATACACTGGATAGAACTCTTTCTAGC
CGTTGaagggcccccagcggtttgcgtgaatgcgtgaatgggcttttctc
acttgcgtgaatgcgtgagtTTGGAAAAAATCGTGTGATAAcgtgaattg
aaggtctgcGCTCTTGAAAGAAAGatgccaataaaaaagttaTCGAAGCA
GTATNATGGGCTTTtctcacttgcgtgaatgcgtgagtTTGGAAAAAATC
GTGTGATAAAGTGAATTGAAGGTCTGCGCTCTTGAAAGAAAGatgccaat
aaaaaagttaTCGAAGCAGTATACTGTACTTCACACGCcctatttcattt
attttagcGGAGTCATTCTCTTCGAACTCGTTACCGGTTGTTTACCATAT
CAACATACAAACAACCCTCTACAGTTCGAAAAACAATTACAACGTTTTCC
AAAACTCCCTTATGGAAGAAAACTCTCTTCAGGttagtaaatattttgaa
ctgaaATATCAAATGCTTGAAGAAAAGCAAACGACAAAATGATCAATATT
GTAATCCGCGATATAAGCGTTCTAATGTGAACCAAGTCCACACTCGTTCG
AATAACAAGAAGCATTCAATTTCAAGAtatatttaaaataatttaactCT
AACCTTGCTTAAAGAACTTGAATTTTGCtttttaactttccatttgcctt
AAGACTTTGATAAGGATAGAATGGTCGTATGCCAAAGGGTCGAGAGTATT
ATAATGCTTTCGTTCTACACAACGTCTCTCATGTCTGTGATTAGTGATTT
TAAACAAATAGAATAATGACTTATATATCTTTCGTTGTCATTTTAGAATT
CATCAATCTCTTGCGAGAAATGTTGCACCATGACCCATCAAGAAGGGCAA
CAATCGACAGAATTATCAACCATCCTTGGTTATCAGAGGATTTCGATATG
AAAGAGGTATGAAGCTTGAATTTTTTACACATTATCCCTATTCTTTAATA
CCTTTAACAATAGCAAGATGAGCCCCCACATTGCCTTTCTATTGANTGGT
TATCAGAGGATTTCGATATGAAAGAGGTATGAAGCTTGAATTTTTTACAC
ATCATCCCAATTCTTTAATACCTTTAACAATAGCAAGATGAGCCCCCACA
TTGCCTTTCTATTGAGAGAACACTAGACTTGCTCGATGAGCACCTCTCAG
ATAACAATCGaatcagtagcgtggtggggtAAATTTTCTGGCGTAGCCAA
AATTTTGGCAACccacaaaaatatattttgtttttggcCCCCTGAAAcct
tataacttttgaattgAGAGCGAAGCAAGCAGAAAAAAGTCAAtggtatt
ttaactaaaaaaaaGCAAGATACTTGTGAAAGGGCGCCATTTTCGTTAAG
AATGAGCACCTTTTCACGTTCCATTGAGCGCTGTCTAAGCTGGATCAAAT
ACTAGTGAAAACTTTAAGTCTTTAAGTGAGCAATGTTGAACCTTTAAATT
ATGGCCTTGGACTTGCAAATAAGAGACTTTAAGACAAAAATCTCCTTATC
CACTTTTACTAAAGtttgtgttttttaattttctcacagAACATTGAGCA
GATCAACAAAGAGAACACCGAAGACATCAAACGTCTCCTTGCCGAGCTGG
AATTGGCcaaccaaaaaatcaaaattttggagAGAAAAAATGAGGACTTG
AAGCAATCAATTCCTGCTTTTCTGGAACAAAAAGGCATCATTAACAAGGA
CAAGAATATCGAACGCTCAGAAAAGAACACCCAGCCTAAGGAAAATGAAG
CTTTCATTGTTGCTTCCAACCCACGATATCCAAATGGTCACCATTTTGAG
CCTACTGAGATGTGGGAGTACCCAAATGGGCACCACTTCCCCTCCGTGGA
GCAGTGGGAATAAATCAaccaaaaattatatttgtaaaTAATATATTTAA
AATCTTCATGATGTCACCACcgttaataaaaaaaacacaaaacctCCCTC
AAATATTTAGATTTCATTATCATCACATGTCTTCCCTGTATCCTGATTCA
AATTGTCAGAACCCAAAGTCTGTTGAAATCCGCACACAAATCCGTACACA
GCCTGCAAAGCAGTTTTCTTAGGGCAGCTAAAGAACTTAAACCTGCACTT
GAAATTAGTCTAAGATTTTAAACATTTCAAGCGCTCTTTAAGGTCTGAAt
tgaattgcttcatttttcaaccgaccaataaccttacaaaaacgtcaaaa
agttttcgctcgtGTCGCGCGTAAGCGGAGACCTTAACGGTTTAAAAAAG
TTNNNNNNNNNGtttgtgttttttaattttctcacagAACATTGAGCAGA
TCAACAAAGAGAACACCGAAGACATCAAACGTCTCCTTGCCGAGCTGGAA
TTGGCcaaccaaaaaatcaaaattttggagAGAAAAAATGAGGACTTGAA
GCAATCAATTCCTGCTTTTCTGGAACAAAAAGGCATCATTAACAAGGACA
AGAATATCGAACGCTCAGAAAAGAACACCCAGCCTAAGGAAAATGAAGCT
TTCATTGTTGCTTCCAACCCACGATATCCAAATGGTCACCATTTTGAGCC
TACTGAGATGTGGGAGTACCCAAATGGGCACCACTTCCCCTCCGTGGAGC
AGTGGGAATAAATCAaccaaaaattatatttgtaaaTAATATATTTAAAA
TCTTCATGATGTCACCACcgttaataaaaaaaacacaaaacctCC
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00039443TCONS_00039443Clytia hemisphaericatranscript
TCONS_00039444TCONS_00039444Clytia hemisphaericatranscript
TCONS_00039445TCONS_00039445Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00039444-proteinTCONS_00039444-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002113supercontigsc0002113:14175..17719 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.61	1.12	0.38	0.15	0.64	0.5	0.52	0.14	0.23	0.31	0.14	0.04	0.49	0.33	0	0	0	0.1	0	0	0	0.1	0.74	1.12	0.43	0.23	0.18	0.39	0.52	1.07