TCONS_00039443 (transcript) - C. hemisphaerica

Overview
NameTCONS_00039443
Unique NameTCONS_00039443
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length191

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00039443 ID=TCONS_00039443|Name=TCONS_00039443|organism=Clytia hemisphaerica|type=transcript|length=191bp
TCGACAATATCTTACTTGACGAGAGtggaaagatcaaaatttcagATTTT
GGCATTTCAAGTTTCCCATCATCACGTGATCACCTCTGTGATACATTCTG
TGGAACCATGTCTCATATGGCTCCAGAAGTGATTAGTGGATACAACGGCA
CCCGTGATGCCCGATATGATGGTCAGAAAGCAGACGTTTGG
Run BLAST on NCBI

transcript from alignment at sc0002113:14175..14699+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00039443 ID=TCONS_00039443|Name=TCONS_00039443|organism=Clytia hemisphaerica|type=transcript|length=525bp|location=Sequence derived from alignment at sc0002113:14175..14699+ (Clytia hemisphaerica)
TCGACAATATCTTACTTGACGAGAGtggaaagatcaaaatttcagGTAAG
ATTTACTTGgagtttttttaacaaaattcgtTACAAAATTACACTAAACT
CCTTTACTTTTCAAGCTTTACTGCGTACCCAGCTTGAAAAGTAAAGGAGT
TTAGtgttattttttaaaagttctaGAATCTGTTGGAACTGGAACTGCTT
TCAATAATTTTAAGTTGATCATAAGAAATTCATATTTCATATAATGtatc
aatattttattttatttcagatTTTGGCATTTCAAGTTTCCCATCATCAC
GTGATCACCTCTGTGATACATTCTGTGGAACCATGTCTCATATGGCTCCA
GAAGTGATTAGCGGATACAANCATTTCAGATTTTGGCATTTCAAGTTTCC
CATCATCACGTGATCACCTCTGTGATACATTCTGTGGAACCATGTCTCAT
ATGGCTCCAGAAGTGATTAGTGGATACAACGGCACCCGTGATGCCCGATA
TGATGGTCAGAAAGCAGACGTTTGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023803XLOC_023803Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039443-exon-sc0002113-1491911889:14175..14219TCONS_00039443-exon-sc0002113-1491911889:14175..14219Clytia hemisphaericaexon
TCONS_00039443-exon-sc0002113-1510915933:14175..14219TCONS_00039443-exon-sc0002113-1510915933:14175..14219Clytia hemisphaericaexon
TCONS_00039443-exon-sc0002113-1575043694:14175..14219TCONS_00039443-exon-sc0002113-1575043694:14175..14219Clytia hemisphaericaexon
TCONS_00039443-exon-sc0002113-1491911889:14554..14699TCONS_00039443-exon-sc0002113-1491911889:14554..14699Clytia hemisphaericaexon
TCONS_00039443-exon-sc0002113-1510915933:14554..14699TCONS_00039443-exon-sc0002113-1510915933:14554..14699Clytia hemisphaericaexon
TCONS_00039443-exon-sc0002113-1575043694:14554..14699TCONS_00039443-exon-sc0002113-1575043694:14554..14699Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002113supercontigsc0002113:14175..14699 +
Expression
No biomaterial libraries express this feature.
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00039443 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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