TCONS_00039445 (transcript) - C. hemisphaerica

Overview
NameTCONS_00039445
Unique NameTCONS_00039445
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length813

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00039445 ID=TCONS_00039445|Name=TCONS_00039445|organism=Clytia hemisphaerica|type=transcript|length=813bp
ggaaagatcaaaATTTCAGATTTTGGCATTTCAAGTTTCCCATCATCACG
TGATCACCTCTGTGATACATTCTGTGGAACCATGTCTCATATGGCTCCAG
AAGTGATTAGTGGATACAACGGCACCCGTGATGCCCGATATGATGGTCAG
AAAGCAGACGTTTGGTCACTcGGAGTCATTCTCTTCGAACTCGTTACCGG
TTGTTTACCATATCAACATACAAACAACCCTCTACAGTTCGAAAAACAAT
TACAACGTTTTCCAAAACTCCCTTATGGAAGAAAACTCTCTTCAGAATTC
ATCAATCTCTTGCGAGAAATGTTGCACCATGACCCATCAAGAAGGGCAAC
AATCGACAGAATTATCAACCATCCTTGGTTATCAGAGGATTTCGATATGA
AAGAGAACATTGAGCAGATCAACAAAGAGAACACCGAAGACATCAAACGT
CTCCTTGCCGAGCTGGAATTGGCcaaccaaaaaatcaaaattttggagAG
AAAAAATGAGGACTTGAAGCAATCAATTCCTGCTTTTCTGGAACAAAAAG
GCATCATTAACAAGGACAAGAATATCGAACGCTCAGAAAAGAACACCCAG
CCTAAGGAAAATGAAGCTTTCATTGTTGCTTCCAACCCACGATATCCAAA
TGGTCACCATTTTGAGCCTACTGAGATGTGGGAGTACCCAAATGGGCACC
ACTTCCCCTCCGTGGAGCAGTGGGAATAAATCAaccaaaaattatatttg
taaaTAATATATTTAAAATCTTCATGATGTCACCACcgttaataaaaaaa
acacaaaacctCC
Run BLAST on NCBI

transcript from alignment at sc0002113:14201..17719+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00039445 ID=TCONS_00039445|Name=TCONS_00039445|organism=Clytia hemisphaerica|type=transcript|length=3519bp|location=Sequence derived from alignment at sc0002113:14201..17719+ (Clytia hemisphaerica)
ggaaagatcaaaatttcagGTAAGATTTACTTGgagtttttttaacaaaa
ttcgtTACAAAATTACACTAAACTCCTTTACTTTTCAAGCTTTACTGCGT
ACCCAGCTTGAAAAGTAAAGGAGTTTAGtgttattttttaaaagttctaG
AATCTGTTGGAACTGGAACTGCTTTCAATAATTTTAAGTTGATCATAAGA
AATTCATATTTCATATAATGtatcaatattttattttatttcagatTTTG
GCATTTCAAGTTTCCCATCATCACGTGATCACCTCTGTGATACATTCTGT
GGAACCATGTCTCATATGGCTCCAGAAGTGATTAGCGGATACAANCATTT
CAGATTTTGGCATTTCAAGTTTCCCATCATCACGTGATCACCTCTGTGAT
ACATTCTGTGGAACCATGTCTCATATGGCTCCAGAAGTGATTAGTGGATA
CAACGGCACCCGTGATGCCCGATATGATGGTCAGAAAGCAGACGTTTGGT
CACTGtaagttgattttatttcaataatttaTAATAAAAAACCGACCACT
ACTTTCTGCACTGCATATGTTTGATCAAGCCCCTCCCCCTGGGCTGCGAG
TTGAGTGCTTTTGCAATTAGGAACACTTAAAACCTTATCTCCTTAGAGAC
TAAGGTCTAAATCTTTAGAAAGAAAATGCTGTGTAACTATAGTTCGAACC
GTAGCTTTGGTACACCATTTAAACCCGTTCAAGTGTCCCAGTCAGAAGTT
TTGTTGTTAAATATATTAAATTCAATGTATATATCTACAATTTTTTCAAT
ACACTGGATAGAACTCTTTCTAGCCGTTGaagggcccccagcggtttgcg
tgaatgcgtgaatgggcttttctcacttgcgtgaatgcgtgagtTTGGAA
AAAATCGTGTGATAAcgtgaattgaaggtctgcGCTCTTGAAAGAAAGat
gccaataaaaaagttaTCGAAGCAGTATNATGGGCTTTtctcacttgcgt
gaatgcgtgagtTTGGAAAAAATCGTGTGATAAAGTGAATTGAAGGTCTG
CGCTCTTGAAAGAAAGatgccaataaaaaagttaTCGAAGCAGTATACTG
TACTTCACACGCcctatttcatttattttagcGGAGTCATTCTCTTCGAA
CTCGTTACCGGTTGTTTACCATATCAACATACAAACAACCCTCTACAGTT
CGAAAAACAATTACAACGTTTTCCAAAACTCCCTTATGGAAGAAAACTCT
CTTCAGGttagtaaatattttgaactgaaATATCAAATGCTTGAAGAAAA
GCAAACGACAAAATGATCAATATTGTAATCCGCGATATAAGCGTTCTAAT
GTGAACCAAGTCCACACTCGTTCGAATAACAAGAAGCATTCAATTTCAAG
AtatatttaaaataatttaactCTAACCTTGCTTAAAGAACTTGAATTTT
GCtttttaactttccatttgccttAAGACTTTGATAAGGATAGAATGGTC
GTATGCCAAAGGGTCGAGAGTATTATAATGCTTTCGTTCTACACAACGTC
TCTCATGTCTGTGATTAGTGATTTTAAACAAATAGAATAATGACTTATAT
ATCTTTCGTTGTCATTTTAGAATTCATCAATCTCTTGCGAGAAATGTTGC
ACCATGACCCATCAAGAAGGGCAACAATCGACAGAATTATCAACCATCCT
TGGTTATCAGAGGATTTCGATATGAAAGAGGTATGAAGCTTGAATTTTTT
ACACATTATCCCTATTCTTTAATACCTTTAACAATAGCAAGATGAGCCCC
CACATTGCCTTTCTATTGANTGGTTATCAGAGGATTTCGATATGAAAGAG
GTATGAAGCTTGAATTTTTTACACATCATCCCAATTCTTTAATACCTTTA
ACAATAGCAAGATGAGCCCCCACATTGCCTTTCTATTGAGAGAACACTAG
ACTTGCTCGATGAGCACCTCTCAGATAACAATCGaatcagtagcgtggtg
gggtAAATTTTCTGGCGTAGCCAAAATTTTGGCAACccacaaaaatatat
tttgtttttggcCCCCTGAAAccttataacttttgaattgAGAGCGAAGC
AAGCAGAAAAAAGTCAAtggtattttaactaaaaaaaaGCAAGATACTTG
TGAAAGGGCGCCATTTTCGTTAAGAATGAGCACCTTTTCACGTTCCATTG
AGCGCTGTCTAAGCTGGATCAAATACTAGTGAAAACTTTAAGTCTTTAAG
TGAGCAATGTTGAACCTTTAAATTATGGCCTTGGACTTGCAAATAAGAGA
CTTTAAGACAAAAATCTCCTTATCCACTTTTACTAAAGtttgtgtttttt
aattttctcacagAACATTGAGCAGATCAACAAAGAGAACACCGAAGACA
TCAAACGTCTCCTTGCCGAGCTGGAATTGGCcaaccaaaaaatcaaaatt
ttggagAGAAAAAATGAGGACTTGAAGCAATCAATTCCTGCTTTTCTGGA
ACAAAAAGGCATCATTAACAAGGACAAGAATATCGAACGCTCAGAAAAGA
ACACCCAGCCTAAGGAAAATGAAGCTTTCATTGTTGCTTCCAACCCACGA
TATCCAAATGGTCACCATTTTGAGCCTACTGAGATGTGGGAGTACCCAAA
TGGGCACCACTTCCCCTCCGTGGAGCAGTGGGAATAAATCAaccaaaaat
tatatttgtaaaTAATATATTTAAAATCTTCATGATGTCACCACcgttaa
taaaaaaaacacaaaacctCCCTCAAATATTTAGATTTCATTATCATCAC
ATGTCTTCCCTGTATCCTGATTCAAATTGTCAGAACCCAAAGTCTGTTGA
AATCCGCACACAAATCCGTACACAGCCTGCAAAGCAGTTTTCTTAGGGCA
GCTAAAGAACTTAAACCTGCACTTGAAATTAGTCTAAGATTTTAAACATT
TCAAGCGCTCTTTAAGGTCTGAAttgaattgcttcatttttcaaccgacc
aataaccttacaaaaacgtcaaaaagttttcgctcgtGTCGCGCGTAAGC
GGAGACCTTAACGGTTTAAAAAAGTTNNNNNNNNNGtttgtgttttttaa
ttttctcacagAACATTGAGCAGATCAACAAAGAGAACACCGAAGACATC
AAACGTCTCCTTGCCGAGCTGGAATTGGCcaaccaaaaaatcaaaatttt
ggagAGAAAAAATGAGGACTTGAAGCAATCAATTCCTGCTTTTCTGGAAC
AAAAAGGCATCATTAACAAGGACAAGAATATCGAACGCTCAGAAAAGAAC
ACCCAGCCTAAGGAAAATGAAGCTTTCATTGTTGCTTCCAACCCACGATA
TCCAAATGGTCACCATTTTGAGCCTACTGAGATGTGGGAGTACCCAAATG
GGCACCACTTCCCCTCCGTGGAGCAGTGGGAATAAATCAaccaaaaatta
tatttgtaaaTAATATATTTAAAATCTTCATGATGTCACCACcgttaata
aaaaaaacacaaaacctCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023803XLOC_023803Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039445-exon-sc0002113-1491911889:14201..14212TCONS_00039445-exon-sc0002113-1491911889:14201..14212Clytia hemisphaericaexon
TCONS_00039445-exon-sc0002113-1510915933:14201..14212TCONS_00039445-exon-sc0002113-1510915933:14201..14212Clytia hemisphaericaexon
TCONS_00039445-exon-sc0002113-1575043694:14201..14212TCONS_00039445-exon-sc0002113-1575043694:14201..14212Clytia hemisphaericaexon
TCONS_00039445-exon-sc0002113-1491911889:14547..14704TCONS_00039445-exon-sc0002113-1491911889:14547..14704Clytia hemisphaericaexon
TCONS_00039445-exon-sc0002113-1510915933:14547..14704TCONS_00039445-exon-sc0002113-1510915933:14547..14704Clytia hemisphaericaexon
TCONS_00039445-exon-sc0002113-1575043694:14547..14704TCONS_00039445-exon-sc0002113-1575043694:14547..14704Clytia hemisphaericaexon
TCONS_00039445-exon-sc0002113-1491911889:15332..15456TCONS_00039445-exon-sc0002113-1491911889:15332..15456Clytia hemisphaericaexon
TCONS_00039445-exon-sc0002113-1510915933:15332..15456TCONS_00039445-exon-sc0002113-1510915933:15332..15456Clytia hemisphaericaexon
TCONS_00039445-exon-sc0002113-1575043694:15332..15456TCONS_00039445-exon-sc0002113-1575043694:15332..15456Clytia hemisphaericaexon
TCONS_00039445-exon-sc0002113-1491911889:15821..15930TCONS_00039445-exon-sc0002113-1491911889:15821..15930Clytia hemisphaericaexon
TCONS_00039445-exon-sc0002113-1510915933:15821..15930TCONS_00039445-exon-sc0002113-1510915933:15821..15930Clytia hemisphaericaexon
TCONS_00039445-exon-sc0002113-1575043694:15821..15930TCONS_00039445-exon-sc0002113-1575043694:15821..15930Clytia hemisphaericaexon
TCONS_00039445-exon-sc0002113-1491911889:17312..17719TCONS_00039445-exon-sc0002113-1491911889:17312..17719Clytia hemisphaericaexon
TCONS_00039445-exon-sc0002113-1510915933:17312..17719TCONS_00039445-exon-sc0002113-1510915933:17312..17719Clytia hemisphaericaexon
TCONS_00039445-exon-sc0002113-1575043694:17312..17719TCONS_00039445-exon-sc0002113-1575043694:17312..17719Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002113supercontigsc0002113:14201..17719 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.454843	0.443543	0	0	0.613318	0.484667	0	0.141396	0	0.306552	0	0	0	0	0	0	0	0	0	0	0	0	0.740826	0.948264	0	0.225134	0	0	0.504811	0
Blast
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BLAST of TCONS_00039445 vs. Swiss-Prot (Human)
Match: MELK (Maternal embryonic leucine zipper kinase OS=Homo sapiens GN=MELK PE=1 SV=3)

HSP 1 Score: 93.2041 bits (230), Expect = 4.142e-21
Identity = 46/132 (34.85%), Postives = 83/132 (62.88%), Query Frame = 1 
Query:    4 KIKISDFGISSFP-SSRDHLCDTFCGTMSHMAPEVISGYNGTRDARYDGQKADVWSLGVILFELVTGCLPYQHTNNPLQFEKQLQRFPKLPYGRKLSSEFINLLREMLHHDPSRRATIDRIINHPWLSEDFD 396
            K+K+ DFG+ + P  ++D+   T CG++++ APE+I G +      Y G +ADVWS+G++L+ L+ G LP+   N    ++K ++    +P  + LS   I LL++ML  DP +R ++  ++NHPW+ +D++
Sbjct:  145 KLKLIDFGLCAKPKGNKDYHLQTCCGSLAYAAPELIQGKS------YLGSEADVWSMGILLYVLMCGFLPFDDDNVMALYKKIMRGKYDVP--KWLSPSSILLLQQMLQVDPKKRISMKNLLNHPWIMQDYN 268
The following BLAST results are available for this feature:
BLAST of TCONS_00039445 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MELK4.142e-2134.85Maternal embryonic leucine zipper kinase OS=Homo s... [more]
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