XLOC_022408 (gene) - C. hemisphaerica

Overview
NameXLOC_022408
Unique NameXLOC_022408
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0001680:6228..15959-

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_022408 ID=XLOC_022408|Name=XLOC_022408|organism=Clytia hemisphaerica|type=gene|length=9732bp|location=Sequence derived from alignment at sc0001680:6228..15959- (Clytia hemisphaerica)
TTGAATAAGACTGGGCAATCTGTATCTGCTATTTACGAAGAGTGGAGAAA
ATACAAAATCAGAGTTCCTGTGTTTGGTGCAATCCTCATTGATGATACTT
TAGAGCAGGTATTCTAACATATTTTCAATTTTATTTATCCAAGAGGTGTT
TTTTTATTTTATTGAACATGATTTGGACAACAATTTTTCAATTTTTTTTT
CTCAAAATATATTTCGAGACCATCCCTAAGAATCTTTAATTTTTTAAATA
TCTAAAAACAAAATATTAAAACAGTTTAATCCTTTCCGTGCCACCATAAT
TGCAAAAAAGTTTTCATCTTTTTAAAATTATGAGTTGTTAGTTGCCAGGC
AGAATGCTAAATATACCCGACAATCGTTTCTAAATTTAAATTTAAAAAGT
TTAAAGTACAATAGTGTGGCTTGTCTGTTTTTGAACTTTGGCATTGGACA
TTGACATGAAAAGTAACGAGTTCTTTGAAAATTTATTCCAATCACTGATT
TTTTACAAAACATGAAGTTGCCAGTATTGAAAGAATAATTTTCATATGCT
CTCAAAATCAATCTAACACAGTACATTTGTATTTACACTGCTATCTCAAT
AGGCCTCAAAATAGGTGAAAATGTAAAATTTAAATAATTAGATGTTAAAT
AAATTAAGTAATAAGTAATTCCTTTTTCAGATTTTGTTGGTTCAAGGTTT
CCACAACAAAGCAAGTTGGGGATTTCCCAAAGGAAAAGTAAACAAAGATG
AAGAAGGCTTGACTTGTGCTATCAGAGAGGTACAGTTTTTTGAAATCTGT
TCATCAAGAACGCATACATAACTAGAATTCGTCGTAGAATTCGCATTTGG
AAACTGGAACTCTTACTTTATAAAAATAAGGACCTATTGCCCAATTTAAA
GGAATTTTAAATTTGTTCTGTATCTTCTTAGATTTATTTGAAATGTTTAT
TTTGTGGCACATAATTATTTAAATGGAAAATCCTTTTTTCCTCTACCAAT
TTGTAAAACATGTTTTTATACTTATATCAACCATTGACTTTAAAGCCCGA
AGGTCTAGAGTGGAGTAGAATCTCTAACCTTTCCCAGGCAAGAAAAAGTG
AAGCCACTTATTTTCCATCCAAAATAGGGATAGATTTTAGTTTCAATTCG
GCGTTTGTGTAAAAACCACGTGCAGGTGTTCTGGATGGGAAATAAGTGGT
TTCATTTCCCATCCAGGAGTCTCGAGTCTCGAGTCTAGCTCTTCAGTTGG
AAGTCAATGACTAATACCAAGTTTTGCTTTTAACATGTCCCCAATTAAAA
TTCATTGCTAAAATATATCGTCAGAATCTTACATGAAAACAATATGAATT
CACTTGTCTTCACCCAAAAATGATGCTATTTTTTCAGCGAATAGAAAATA
CAGCATATTAAGATTGTTTCCTTAAGATAAAAACAGGACTGCAAAGTTTT
CAAAATATAGCGTAAGCAACTTTTATTTCTCAGATAAACCCGCTTGGTAA
CATAATTTGTAAAGGGAAGAATAGCTGGTTGCTCTTCTGTCTTTCTGTCA
GAGATTTTTCTAACCTTATGCCTTTTAGGTTTGGGAAGAAGTTGGTTTCG
ATATTTCAAAGTTAGCAAAAGAAAGTGATTTTATCGAGAACAATTTTCAT
GACCATCAGGTGAGAAGATATAACTTTCTTTTTTTCGTGAATCTTTTTTA
CAACACGTTTTTAATGAGAACAAACTATAGAAGAACATAAAGCTTCGCTG
GTCCAATTATTAAGAACAAGTGAAGAATATTTGAAGGTTTTGCCGACTCT
AAGACATGGGATTTCTTAAGAAATTATAAAAACACCATAAAATGATGAAA
ATAAAGCCGATGTTTTAAAAACATTCTTAGGGTTAATCTCAAAAGTTAAG
TTAACATCTCAAGGCTTTAAAATTTTGGACTTTCTTATAAAGAAAAAACG
TGTATTCAATTCAAAGACATAAATTGGTTTGAATCTTAACCCTTCAAGTA
TCTTGGGAGAGGGTAAAGAGCCCCCTCAAAACGAAATTTGGATTTATTGA
TGACGCCATCTCCACCTGATGACCTCACCATTATTTGAAAATATCCCCTC
TACCTAAATACTGTATCGAGTGATTGGAAAATACTATTGACTTAAAATTT
TGACAAGTTTTAGGTTTTGATAATACAAGCTTTTAACCAAATTTAAACTA
AATCATACCAGGGGTTATGTCAAAAGTGAGCATTTTAGGTAAAATACGGA
CCGGTCTGTAAAATACCAACCAGTGGCCATGTGACTAAATTGAAATTTAG
TTTTGATTTCTGTTTGCAGATTCGGTTATACATAGTACCAGGAGTTGACA
AGACGTTCGATTTCAAACCAAACACTCGAGGTGAAATCAAAGTAAGACAC
CTCATCCATCCATTCATTCATTTATCTTTTTTTACAAAATGTCAGTGTTT
TTAAGACCAACTTTGTCATTGAACAATATTTTTTGATACTTTAATGGGAT
TAAATTTTGCAGGGGTTAAGTTTCACGGTTCAGCTCATCCATGAAATTTT
AATATTTTGTGGGGACTGAATTTCGAAGATGGCTTCATTGGGTGACAATA
TTTTCATGATTTTGTGCCTTTTACCGTCAAATCATGAATGTTGGTTGTTG
AAATACGCATTCTTAGCGCCACTTCGATGCCAGTAAATATTCAAAAAGTT
TTTATTTGACATTTTTCGTGTTTTGTTTAGAAATATTTTGCGGATAAGGA
CTTTCTAAATTCCCATTGGGGCTTAATTTCCCGGATGACACCCGAATCCG
CGAAAATCCACGAAATTTAATCCCCCCGAATATTTATCCCATTAAAGTAT
CCTGTCTAATACACCTATCAACCCTTGTTTTAAAGGTAGCCTACGAATGT
CGTGCTCCGAGAAAGATTTCTCCTTGTATATCCATTTCCAGTCCCTTTAA
AGCCGACTGCGCTGCGGTATATCAGTATGAGCAAACTTCCAAGCTTTAGT
AGTTGCTTGGTTACTAGGGAGCCAACTTTCAAGCTTTTGTAGTTGCTTGG
TTACTAGGGTTTTCAAGAAGTGAGAAAAGAAGAAAATGGTCATTTTTCTC
CCTCCCAAAAATTCCCAAAGTTAACCAAATTTATTACACCCATTCTTTCA
GCAGTATTTTAGCAAAAAAACAATCAGTTCCTTTTCTTTCAATAAAACGG
TTGAAAGGTATTATGCATTGGAAGGTTTCAAAGCTTGTTATTTATGATAT
GCACCATTGCAATGTCTTCTGACATTACATCATGGACCCAACAGCTGATT
GGTTGTAAGTGACGTAAAATCAATCAATACGTCACTTTCAACCAATCAGC
TGTTGGGTCCGTGGAAGACATTGNNNNNNNNNNNNNNNNNNNNNNNNNNN
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TTTTATTTCCATCGAAAAATGAAACGGATCTCAGCTTCTCAAAATATGCC
AGACAGTGTTGACTGTGCTACGACTTTGGAATGATTGCTGAATTTGTGGG
GATTGTTGATTTTTTTTTTTTGCCCTCATAAGAAACGTTCTTCCCCATCG
TTACTTTAGAGTTCGGTTTTTGCTAAACTGAAAAAAGAAACAAAGAGCAA
TTTTAGCTACTATTTTTTCAAACACCCTGAAGAATGATCCTTAATCGAAA
TTTCATTCCAAAAAGAGCAAATTGTTAACTCCTTTTCAAATCTTTTTACG
ATTCATCTTAGACCACTTCGAAAATGGATCCAGGACAAAAAAGAGGCCAT
GTCTAGTCAAAAACATTCCATACTGGAAGATTACTTCTCCGGCAGCACTT
CCCAGAAATCGAATTTTCTATCAAGCGCAAGTCCACAGTCTGAAGAACGC
CGTGAACATTTGAAGAAGAAACGAAAGAAGGAGCAGGAAGAACAGTATAA
GCAGTTGCACATCTTGATGAATCCACTTAACCCGTTGAGAAACCACGTGG
CTAATGAGAATGCGTTAAAATCAATACTCGGCGTACAAAGTTAGTGGATT
TTTTATCATTCTTCGCAACGGAAGTAGCCTAGTTAGCTAAGCCCGTATTC
ACAAGACTCAGATGCACGGCATACGGCAATGTAGCGTTTTCTGCGCTTTA
ACGATTTTTTACACAGGAAAAAATTAGCAGATCACCCGGATGGGAAAAGT
ATTTTTGACCATTTTTTCTCAATTTAAAAGGCATGATATCCAAAACTTCA
CAAAATTCAATGATTTTCAATGGAATTTTCAACAGTTTAATACTGAAAGA
AGACATTTTAATGTAAATTTTAGCTAATACTTACTGTTTTGAAGCCTGAA
TAGCGATTTTTAAAAGTTTTGGCAATATTTACGTAAGCCCAAAATTAGGC
TGTGGCCGAATAAGGGCCGGCGTAAAAGGGGCCGGAGTAAAAAGGACCGG
TAAGAAGGTACATAATTTTTCCCATGACTTATTTACGGATTTTGAAGTTT
GCCTTGGAATACTTTTTCAGTCACGACTTACCATCAGATTTATCCCAGCG
ACTGAATCAAGGTGATTTCGATGAGAAAACAAACACTACGGTTTAACTTA
CTAAAAAAAATTTTTATTGGACAGACACAATTGATCTTTATTTATGATAT
GCACCATTGCAATGTCTTCTGACATTACATCACGGACCCAGCAGCTGATT
GGTTGTAAGTGACGTAAAATCAGTCAATACGTCACTTGCAACCAATCAGC
TGTCGGGTCCGTCGAAGACATTGCAATGATGAAATGAAAAATAGGAACAT
ATTCTTTCCCACGTCATGACGCCAGTGGTTTAATTTACTAAAGAACAATA
GTGTGTGTTCAGTAAACAAATCTTTTTAGAGAGTTTAACCATAGTTAAGC
CTGATTTTTTACCTCGAATTTCCGTAACTCGAACGATTACTGATTATCCC
CTTGGTGTTCCAGCACTCGACTTAAAATACACTTCCCTACTTGCTCTAAC
TTTAATCATCAGGTAGGTCCAATAAGCGTTCCGGCTTGTTTCATTTATAC
GCTTCATTTTCTAACCATAGCTTCTCAACCACAACCGGAACAACCGGAAG
TTATCCGGAAACTCTTAACGGGGAATGTGCCACAATCCCCTCCAACCAAT
TCGTTCAAACGCTCACAAAAAGATCATTCCAAAGATTCGAAAAGACGGCC
AAACTTGACTTCTTTGTTCAGTACAGAAAACGATGAAAAATCATCGAAGG
GTGGCGTTGATTTACTTGGACACTCCCTCTACAGCCCTTTTGCAATGACC
AGCCTTCTACCAAAAGACCAAGCTTCACCATTGAAATGGAATACGAACGT
CTCTTCCCAAACAATCTCGGGAAAGAAACTTGGTAATACTAAGAGAAAGA
AGAAATTAGTTTACGCAGATTTTGACTTTTCTTCACCCGCTTTCACAAAT
TTCCGTTTCGATTATCAGTCTATTTTAAATGAGCTATGATGGAGAAGATA
GTTTCTAGTCTAAGTCTTTTGTAAATATTTTATACATTTTTGAACCTTTT
AGCAAACTTTTATGCTATATTTTCTAATTTTAGCATATTTACAGTAACTC
TTATTTGTCCTATATTTTTTATCTAAATATTGTCGTATTTTACGTACTAA
TTGACAACATAATACACCTTTTCGACCGGACCTTTTCGACTTTTCGCCAA
TTGACGTGCGGGCATTTTTTGTCCGTTTTACCATCCTAAAACCGTCCCAG
TCTTTTTTTCGAACAAAGTGTAAAAAAAGATTGGATCGAGTTTAGGGTGT
TGATTAAATATTAAAGTGGCACTCGCCTGACTTGCGACTACGGTCGAAAA
GGTGTATTGGTAAGGAGACATTTAAAACACTTCTCGACCATTTTTTTACG
ATCTTGAAAGAAATTTTAAGCCTCTTTCGACTGCGATTTCTTCTGTTTTC
ACTACCTCGTTTTATTTTTGAAGTTCTCCTTTTTGTTGACCATCCACAAG
CTTTAATAGTAAGTTTTAGAAACAGTATAGTATTTTATTCAGACACTAAT
TTGTATTTGTTTTTATTTTCACTTTTTATTAAAGTCTGTTCCAAAAAGAT
TGGCAGTCCGCACATTTTGATATATTGCTCTTGTATTAAAAAGATATAAT
TAAAAGTAATACCTCATTGAAAGGATAATCCTGAGCGGTTTTTCTCAAAA
TGTGCGGACTGCTAATTTTATAGAACAGACTTTCAATTGATTTTACTTTA
AAGCGTGTCCGGAAAAAAATACAGAACAAAATCTGTCAAAGTATTTTGTT
TTGCTGGCTTAAACTAATCACTGAACATAAATCGTTTTAAAGTTAGCATT
TTCAAGATTTTCGATTTCTCAGCCCCCAAAAAACCAACGCAATGATTTTT
AGTCAAAAGACGACCAAGCTTTCAGGTTATTAAATCAAAATCAATATCAA
AACGATAAATGCATTAAAAATTCTGGTACCTATAAGCTCTATATTTTTCT
CTTTACTTTTACGGGGTCGACAAAGCAAACTTATTATTTACAATACCTAT
TTTGGGTGAATCGCGCCTCGTATATGTATTTATTTGTTAATTAAAGAGTA
AAGGCCGGTCTTCACTTGCGCCCGCTGCAATCGCTCTTTTTGGCTTTAAC
CATGGCGTTCTAAATCTATTTACGTCATAAAAATGTAGCGCGCGCTTGAA
AAAAAAGTTAAACACATTTCAACTTTTTTTCAACCGTTGCGTCAGATCGC
GCCATTGGAATTGCTTCATTTTTCTTTTGACCAATAGCGCGGTAGCTTTG
CTCGAAAAAGTGCGCTTGCAGGCCGCGTGCAAGTGGAGACCGGCCTTAAC
CCCTTTACAATTATTTCATGTCATCGGATTTTACGTGGATGTCTCCAAAA
TTTTCATTTTTGTTTTTATTGTAGGAATATTATATTTTAACGTAGAATAT
GAATAAAATATAAGGGTATCACACATAGACATAGTGTTTCGAATTTCTAT
TTGCCTCGTTATAATATTCTATCAGTTACAAA
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00037662TCONS_00037662Clytia hemisphaericatranscript
TCONS_00037661TCONS_00037661Clytia hemisphaericatranscript
TCONS_00037660TCONS_00037660Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00037661-proteinTCONS_00037661-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001680supercontigsc0001680:6228..15959 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.75	3.13	4.03	3.78	62.64	57.19	39.07	52.8	43.55	40.73	37.97	36.49	31.61	35.52	11.02	13.76	19.37	12.73	6.73	6.09	9.96	8.21	19.33	18.93	13.4	26.88	8.85	5.36	14.22	19.66