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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00037660 ID=TCONS_00037660|Name=TCONS_00037660|organism=Clytia hemisphaerica|type=transcript|length=2479bp
ACTTTggaatgattgctgaatttgtggggattgttgattttttttttttg
ccctcATAAGAAACGTTCTTCCCCATCGTTACTTTAGAGTTCGGTTTTTG
ctaaactgaaaaaagaaacaaagagcAATTTTAGCtactattttttcaaa
caccCTGAAGAATGATCCTTAATCGAAATTTCATTCCAAAAAGAGCAAAT
TGTTAACtccttttcaaatctttttacgATTCATCTTAGACCACTTCGAA
AATGGATCCAGGACAAAAAAGAGGCCATGTCTAGTCAAAAACATTCCATA
CTGGAAGATTACTTCTCCGGCAGCACTTCCCAGAAATCGAATTTTCTATC
AAGCGCAAGTCCACAGTCTGAAGAACGCCGTGAACATTTGAAGAAGAAAC
GAAAGAAGGAGCAGGAAGAACAGTATAAGCAGTTGCACATCTTGATGAAT
CCACTTAACCCGTTGAGAAACCACGTGGCTAATGAGAATGCGTTAAAATC
AATACTCGGCGTACAAACTTCTCAACCACAACCGGAACAACCGGAAGTTA
TCCGGAAACTCTTAACGGGGAATGTGCCACAATCCCCTCCAACCAATTCG
TTCAAACGCTCACAAAAAGATCATTCCAAAGATTCGAAAAGACGGCCAAA
CTTGACTTCTTTGTTCAGTACAGAAAACGATGAAAAATCATCGAAGGGTG
GCGTTGATTTACTTGGACACTCCCTCTACAGCCCTTTTGCAATGACCAGC
CTTCTACCAAAAGACCAAGCTTCACCATTGAAATGGAATACGAACGTCTC
TTCCCAAACAATCTCGGGAAAGAAACTTGGTAATACTAAGAGAAAGAAGA
AATTAGTTTACGCAGATTTTGACTTTTCTTCACCCGCTTTCACAAATTTC
CGTTTCGATTATCAGTCTATTTTAAATGAGCTATGATGGAGAAGATAGTT
TCTAGTCTAAgtcttttgtaaatattttatacatttttgaacCTTTTAGC
AAACTTTTATGctatattttctaattttagcATATTTACAGTAACTCTTA
TTTGTCCtatattttttatctaaataTTGTCGTATTTTACGTACTAATTG
ACAacataatacaccttttcgaccggaCCTTTTCGACTTTTCGCCAATTG
acgtgcgggcattttttgtccgttttaccatcctaaaaccgtcccagtct
ttttttcgaacaaagtgtaaaaaaagattggatcgagtttagggtgttGA
TTAAATATTAAAGTGGCACTCGCCTGACttgcgactacggtcgaaaaggt
gtattggtaAGGAGACATTTAAAACACTTCTCGACCATTTTTTTACGATc
ttgaaagaaattttaagcCTCTTTCGACTGCGATTTCTTCTGTTTTCACT
ACCTCGttttatttttgaagttctcCTTTTTGTTGACCATCCACAAGCTT
TAATAGTAAGTTTTAGAAACAGTATAGTATTTTATTCAGACACTaatttg
tatttgtttttattttcactttttattaaagtctgttccaaaaagATTGG
CAGTCCGCACATTTTGATATATTGCTCTTGTATTAAAAAGATATaattaa
aagtaatacctcATTGAAAGGATAATCCTGAGCGGTTTTTCTCAAAATGT
GCGGACTGCTAATTTTATAGAACAGACTTTCAATTGATTTTACTTTAAAG
CGTGTCCGGAAAAAAATACAGAACAAAATCTGTCAAAGTATTTTGTTTTG
CTGGCTTAAACTAATCACTGAACATAAATCGTTTTAAAGTTagcattttc
aagattttcgatttcTCAGCCCCCAAAAAACCAACGCAATGATTTTTAGT
CAAAAGACGACCAAGCTTTCAGGTTattaaatcaaaatcaatatcaAAAC
GATAAATGCATTAAAAATTCTGGTACCTATAAGCTCtatatttttctctt
tactTTTACGGGGTCGACAAAGCAAACTTATTATTTACAATACCTATTTT
GGGTGAATCGCGCCTCGTATATGTATTTATTTGTTAATTAAAGAGTAAAG
GCCGGTCTTCACTTGCGCCCGCTGCAATCGCTCTTTTTGGCTTtaaccat
ggcgttctaaatctatttacgtcataaaaatgtagcgcgcgcttgaaaaa
aaagttaaacacatttcaactttttttcaaccgttgcgtcagatcgcgcc
attggaattgcttcatttttcttttgaccaatagcgcggtagctttgctc
gaaaaagtgcgctTGCAGGCCGcgtgcaagtggagaccggccttaacccC
TTTACAATTATTTCATGTCATCGGATTTTACGTGGATgtctccaaaattt
tcatttttgtttttattgtaggAATATTATATTTTAACGTAGAATATGAA
TAAAATATAAGGGTATCACACATAGACATAGTGTTTCGAATTTCTATTTG
CCTCGTTATAATATTCTATCAGTTACAAA Run BLAST on NCBI transcript from alignment at sc0001680:6228..9737- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00037660 ID=TCONS_00037660|Name=TCONS_00037660|organism=Clytia hemisphaerica|type=transcript|length=3510bp|location=Sequence derived from alignment at sc0001680:6228..9737- (Clytia hemisphaerica)
ACTTTGGAATGATTGCTGAATTTGTGGGGATTGTTGATTTTTTTTTTTTG
CCCTCATAAGAAACGTTCTTCCCCATCGTTACTTTAGAGTTCGGTTTTTG
CTAAACTGAAAAAAGAAACAAAGAGCAATTTTAGCTACTATTTTTTCAAA
CACCCTGAAGAATGATCCTTAATCGAAATTTCATTCCAAAAAGAGCAAAT
TGTTAACTCCTTTTCAAATCTTTTTACGATTCATCTTAGACCACTTCGAA
AATGGATCCAGGACAAAAAAGAGGCCATGTCTAGTCAAAAACATTCCATA
CTGGAAGATTACTTCTCCGGCAGCACTTCCCAGAAATCGAATTTTCTATC
AAGCGCAAGTCCACAGTCTGAAGAACGCCGTGAACATTTGAAGAAGAAAC
GAAAGAAGGAGCAGGAAGAACAGTATAAGCAGTTGCACATCTTGATGAAT
CCACTTAACCCGTTGAGAAACCACGTGGCTAATGAGAATGCGTTAAAATC
AATACTCGGCGTACAAAGTTAGTGGATTTTTTATCATTCTTCGCAACGGA
AGTAGCCTAGTTAGCTAAGCCCGTATTCACAAGACTCAGATGCACGGCAT
ACGGCAATGTAGCGTTTTCTGCGCTTTAACGATTTTTTACACAGGAAAAA
ATTAGCAGATCACCCGGATGGGAAAAGTATTTTTGACCATTTTTTCTCAA
TTTAAAAGGCATGATATCCAAAACTTCACAAAATTCAATGATTTTCAATG
GAATTTTCAACAGTTTAATACTGAAAGAAGACATTTTAATGTAAATTTTA
GCTAATACTTACTGTTTTGAAGCCTGAATAGCGATTTTTAAAAGTTTTGG
CAATATTTACGTAAGCCCAAAATTAGGCTGTGGCCGAATAAGGGCCGGCG
TAAAAGGGGCCGGAGTAAAAAGGACCGGTAAGAAGGTACATAATTTTTCC
CATGACTTATTTACGGATTTTGAAGTTTGCCTTGGAATACTTTTTCAGTC
ACGACTTACCATCAGATTTATCCCAGCGACTGAATCAAGGTGATTTCGAT
GAGAAAACAAACACTACGGTTTAACTTACTAAAAAAAATTTTTATTGGAC
AGACACAATTGATCTTTATTTATGATATGCACCATTGCAATGTCTTCTGA
CATTACATCACGGACCCAGCAGCTGATTGGTTGTAAGTGACGTAAAATCA
GTCAATACGTCACTTGCAACCAATCAGCTGTCGGGTCCGTCGAAGACATT
GCAATGATGAAATGAAAAATAGGAACATATTCTTTCCCACGTCATGACGC
CAGTGGTTTAATTTACTAAAGAACAATAGTGTGTGTTCAGTAAACAAATC
TTTTTAGAGAGTTTAACCATAGTTAAGCCTGATTTTTTACCTCGAATTTC
CGTAACTCGAACGATTACTGATTATCCCCTTGGTGTTCCAGCACTCGACT
TAAAATACACTTCCCTACTTGCTCTAACTTTAATCATCAGGTAGGTCCAA
TAAGCGTTCCGGCTTGTTTCATTTATACGCTTCATTTTCTAACCATAGCT
TCTCAACCACAACCGGAACAACCGGAAGTTATCCGGAAACTCTTAACGGG
GAATGTGCCACAATCCCCTCCAACCAATTCGTTCAAACGCTCACAAAAAG
ATCATTCCAAAGATTCGAAAAGACGGCCAAACTTGACTTCTTTGTTCAGT
ACAGAAAACGATGAAAAATCATCGAAGGGTGGCGTTGATTTACTTGGACA
CTCCCTCTACAGCCCTTTTGCAATGACCAGCCTTCTACCAAAAGACCAAG
CTTCACCATTGAAATGGAATACGAACGTCTCTTCCCAAACAATCTCGGGA
AAGAAACTTGGTAATACTAAGAGAAAGAAGAAATTAGTTTACGCAGATTT
TGACTTTTCTTCACCCGCTTTCACAAATTTCCGTTTCGATTATCAGTCTA
TTTTAAATGAGCTATGATGGAGAAGATAGTTTCTAGTCTAAGTCTTTTGT
AAATATTTTATACATTTTTGAACCTTTTAGCAAACTTTTATGCTATATTT
TCTAATTTTAGCATATTTACAGTAACTCTTATTTGTCCTATATTTTTTAT
CTAAATATTGTCGTATTTTACGTACTAATTGACAACATAATACACCTTTT
CGACCGGACCTTTTCGACTTTTCGCCAATTGACGTGCGGGCATTTTTTGT
CCGTTTTACCATCCTAAAACCGTCCCAGTCTTTTTTTCGAACAAAGTGTA
AAAAAAGATTGGATCGAGTTTAGGGTGTTGATTAAATATTAAAGTGGCAC
TCGCCTGACTTGCGACTACGGTCGAAAAGGTGTATTGGTAAGGAGACATT
TAAAACACTTCTCGACCATTTTTTTACGATCTTGAAAGAAATTTTAAGCC
TCTTTCGACTGCGATTTCTTCTGTTTTCACTACCTCGTTTTATTTTTGAA
GTTCTCCTTTTTGTTGACCATCCACAAGCTTTAATAGTAAGTTTTAGAAA
CAGTATAGTATTTTATTCAGACACTAATTTGTATTTGTTTTTATTTTCAC
TTTTTATTAAAGTCTGTTCCAAAAAGATTGGCAGTCCGCACATTTTGATA
TATTGCTCTTGTATTAAAAAGATATAATTAAAAGTAATACCTCATTGAAA
GGATAATCCTGAGCGGTTTTTCTCAAAATGTGCGGACTGCTAATTTTATA
GAACAGACTTTCAATTGATTTTACTTTAAAGCGTGTCCGGAAAAAAATAC
AGAACAAAATCTGTCAAAGTATTTTGTTTTGCTGGCTTAAACTAATCACT
GAACATAAATCGTTTTAAAGTTAGCATTTTCAAGATTTTCGATTTCTCAG
CCCCCAAAAAACCAACGCAATGATTTTTAGTCAAAAGACGACCAAGCTTT
CAGGTTATTAAATCAAAATCAATATCAAAACGATAAATGCATTAAAAATT
CTGGTACCTATAAGCTCTATATTTTTCTCTTTACTTTTACGGGGTCGACA
AAGCAAACTTATTATTTACAATACCTATTTTGGGTGAATCGCGCCTCGTA
TATGTATTTATTTGTTAATTAAAGAGTAAAGGCCGGTCTTCACTTGCGCC
CGCTGCAATCGCTCTTTTTGGCTTTAACCATGGCGTTCTAAATCTATTTA
CGTCATAAAAATGTAGCGCGCGCTTGAAAAAAAAGTTAAACACATTTCAA
CTTTTTTTCAACCGTTGCGTCAGATCGCGCCATTGGAATTGCTTCATTTT
TCTTTTGACCAATAGCGCGGTAGCTTTGCTCGAAAAAGTGCGCTTGCAGG
CCGCGTGCAAGTGGAGACCGGCCTTAACCCCTTTACAATTATTTCATGTC
ATCGGATTTTACGTGGATGTCTCCAAAATTTTCATTTTTGTTTTTATTGT
AGGAATATTATATTTTAACGTAGAATATGAATAAAATATAAGGGTATCAC
ACATAGACATAGTGTTTCGAATTTCTATTTGCCTCGTTATAATATTCTAT
CAGTTACAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00037660-exon-sc0001680-1575043694:9221..9737 | TCONS_00037660-exon-sc0001680-1575043694:9221..9737 | Clytia hemisphaerica | exon |
| TCONS_00037660-exon-sc0001680-1575043694:6228..8189 | TCONS_00037660-exon-sc0001680-1575043694:6228..8189 | Clytia hemisphaerica | exon |
| TCONS_00037660-exon-sc0001680-1510915933:9221..9737 | TCONS_00037660-exon-sc0001680-1510915933:9221..9737 | Clytia hemisphaerica | exon |
| TCONS_00037660-exon-sc0001680-1510915933:6228..8189 | TCONS_00037660-exon-sc0001680-1510915933:6228..8189 | Clytia hemisphaerica | exon |
| TCONS_00037660-exon-sc0001680-1491911889:9221..9737 | TCONS_00037660-exon-sc0001680-1491911889:9221..9737 | Clytia hemisphaerica | exon |
| TCONS_00037660-exon-sc0001680-1491911889:6228..8189 | TCONS_00037660-exon-sc0001680-1491911889:6228..8189 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001680 | supercontig | sc0001680:6228..9737 - |
Blast
The following BLAST results are available for this feature:
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