XLOC_020704 (gene) - C. hemisphaerica

Overview
NameXLOC_020704
Unique NameXLOC_020704
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0001311:45734..53453-

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_020704 ID=XLOC_020704|Name=XLOC_020704|organism=Clytia hemisphaerica|type=gene|length=7720bp|location=Sequence derived from alignment at sc0001311:45734..53453- (Clytia hemisphaerica)
ACTTCTTCTCAAAACAAAAATTATTAACTCAAAAGAAATAGTAAGTATAT
AGACTTTCAACTTTACTTTTCCAGTTCCACATAGAGTTATTTTTCTAGTG
GATCTGTTTAAAGCACCTTTTTTGCCCCTCACCCTAAAAAATGATTGAGG
CGTCTTTTCTTTTTTTTTTGCCACTTTTTTTCAGATTCATCATTCACTGC
ACTGAATCTGATTGTGGTTTTTATTCCCGCCCTTCAGATTCAAGGTCGAG
AATCACCTCTGAATCTATTTGCGGCAACCCGTGGCCAGGGCAGGTGTGGA
TCCTGTGCCTGCGACCGACCGAGCTTGTGCGTATCGACAGCTCATAAAGA
ATTCAACTGCCTTGTCAGTTATTAAAGTTACAAAAAACTCTTAAAAGTAT
AATATTTTTGCAAACAATTATAGTTTGACTAGATTATTTTATACTATATA
CAGTTAGAGCAGTTTTTCTATCTGTGCGCAAAGATGATATCTATTGCGTT
ATATCGTGCACGCATAGGAAGCTTTGCTTTTACATCTCAGAAAAATGTGA
AATGTATCGCTAAATCTATTGTTGTTGGNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNACACACCTTTAGATTTTCTGCATCTTTCAAAAAATGGAATTTTTG
TTCAATATCCCAACAACGTAGTGTACAAAGTGGGAGATCCAAACCTTATT
TTTTTTAAAGCAAATTACACGCTTCTATTATCAGGCGATATAGAACTTAA
CCCAGGCCCAACTGTTCAAGGTTCATTTCACCAGGGCAACAGTAAATTTG
GCAAGACTGCAGGTATACAATGTTCCTCAAATTGTTTTTTTGCTATTTGC
TATGCTCAGTTGAGGAAATTATTGCTATGGAAGACTCATGATTTGGATTA
TGTTTTAGATCAAGGCGATTTGAATTTCAAAAAGTTGGGAATCACAGGAA
AGTCTCCATTTGTTGAAGAGTTTTCTAAGACAATTGACATAGGAGGTAGC
ACTTGTGCACTGAATTTCAATATTTTTGAAGGCTATTTTGAGACTGGTGA
TATTTCAGTAAATTTTGTTCAGGAGGAACTCTTATTACAACATTCTGGTG
CAGTTTTAGTGATAGCTGGAAATTGCTTAGCTGTGATGCACTATAACAAA
AATTATTTTGACTCGCATAGCAGAGACTCCGAAGGCCATCAAGTTGAAGG
CAGTATTGGAACTTCAANCCGAGCTTGTGCGTATCGACAGCTCATAAAGA
ATTCAACTGCCTTGTCAGTTATTAAAGTTACAAAAAACTCTTAAAAGTAT
AATATTTTTGAAAACAATTGTAATTTGACTAGATTATTTTATACTATATA
CAGTTAGAGCAGTTTTTCTATCTGTGCGCAAAGATGATATCTATTGCGTT
ATATCGTGCACGCATAGGAAGCTTCGCTTTTACATCTCAGAAAAATGTGA
AATGTATCGCTAAATCTATTGTTGTTGGTTCTGACCTATCCAATAATGCT
CTTTTAAAACTATTGAGAGNACAACTTACAAGAAATTAAACAGTATATAA
GATCTGAGTATAAGAACATAAATCTTTTCAATATCATTTATCTCAAAACT
GATTTTCATGATTAGGAAAGTATAAATAGTACTGTATCAAGGCAAGTATC
ACGCAGACAAAAAAATTTTTCACAAAAGAGATCAGTTGAAAAGATTAAAG
GTACTGATCAATATAAAGATTTATTGGAAAAACAAAACGCTGCTCAGAAA
AGGTCACCNGAGCTAACAGAGCTTTACACACCTTTAGATTTTCTTCATCT
TTCAAAAAATGGAATTTTTGTTCAATATCCCAACAACGTAGTGTACAAAG
CAGGAGATCCAAACTTTATTTTTTTTAAAGCAAATTACACGCTTCTATTA
TCAGGCGATATAGAACTTAACCCAGGCCCAACTGTTCAAGGTTCATTTCA
CCAGGGCAACAGTAAATTTGGCNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNCTCGTTTGATGGTAATTTCTACGTATGCACAACCTGTCATAGA
AAATTAATGAAGGGAGAAATCCCATGCCAGTCTGTTTCTAACAAACTTCA
AATTTTTGATCTCCCAGATCATCTAAGTGATATAAGAAAATTGGAAAGAA
TTTTAGTGGCTCAAAGAATTTTATTTTCAAAAGTCATGATCATGCGTAAA
GGTGGATTCCCCAAATAGCAAGGTGCAATATGCAATGTTCCTATTGAAAC
ACCAGGTGTATGTAAAGTACTTCCTAGAGGAAGTTATAGTAGTGGTGTAA
TAAATGTTGAATTAAAAAGAAAAATATGCTACAAAAACCCTGTTATTTCG
CAGCAAGTAAGACGACAAATTTTTTTTGAAACTTTGGACTTTTTAGTGAA
TAATAATCCTTTGTATCATGATATAAATATTGATATGTCAATAATTGACC
AAATGAATAATGATGAATAAGTTGAAAGGGTTTTATCAAATAATGATTCC
ATATCAAACGCTTCTTCCAATAATATAAGATTTGTTGATGATACAACAGT
TACTTTAATCAAGCCTTTTGAAGAGCAATTAGAGAATGAATTTGATTCTG
ATGATCCACTCAGTGCGTATCGGACACCAACATGTGAAACAGTCATTGTA
TCAGAAGTGCGAAACATTATTTTAGATGATGAAAATGCAATTTTAGCTCC
GGGTGAAGGTCAAACCCCCAATTAATTAACTCAAGATGAATTTTGTGAAG
AGCCTGCCCATCCTCATCTTTTTCCTACTGGGAAATTTGGATATAACGTA
GAGCGAGATATAAAATTGTCGCCAACAAAGTACTTTAATCAGCGTCTTTT
AAATTACACTCAAAAGTTTGCTTCGGATTNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNTTTTTGCTCACAAAACTTTACTACAGCTTAATC
TTAGAAGTAAAATCAATATCGCAATGAGAATTTCAAATTCCAACTTGACT
GCGGGACTATTAGCAAAAAATTTTAATGATACAATTCAAAATTGCGTAGC
ATCTGATAATGCATACAAGTTTATGAGTACTATAAAAGGAACCCCTGCAT
TCTGGCAACATATGTTATCTGATGTTCTTGCAATGGTTAAACAACTTGGT
GTCCCAACATACTTTATGACTCTCTCTTGTGCAGATTTACGATGGGAGGA
ATTTGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGCGTCAA
TATCAATATAGAAAAGAGTTGTTTTTCAAAGAGATTATAATGGATGGCCA
ACTTGGAAAAATTACATACTATGCTCTCAGAGTAGAATTTACTTTCAAGG
GTAGTCCACATGATCATTGTTTGCTTTGGGCTAAAGATGTTCCAAAACTT
GAAAATGGGAAAGAAAAGTATATTGAACACATAGATAGTGTTATTTCTGC
TAATGTTCCTGAGAGAGAAGAAAGTCCTGAATTATGGAAGTTAGTCGNAC
CAGACAAAGATCAGCATTTGTTTCTAAAACGTGACCCATATTCTTGTTTT
GTCAACAATTATTTTGCAGAAGGCCTCCTAGCATGGGAGGTCAACATCGA
TATTCAGCCAGTCTTTAATGCATACAAGGCAGTTACATACATGCGTGCCT
ATTTTTCAAAAAGTGAAGATAAGTGTTCAACTGCAATGCAAGAAGCATTA
AAACAGGCCAAAGATTCAAATGACAGTCAGTTTGAGAAGAGAGAGAGAGT
GAGAGAGAGAGTGAACCATCCTAGATCATTAGGAATTGGCCTAGAAAAAT
TAAATATTAAATAAAATATCTCTAGGAAATTACTACGCGTAATAAAGCAA
AACAATATAGCACTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCATTCACAACGAT
CTTGCGCCAAAACAAACCAATTATCTTTACTGATATTAGCACGACGAAGT
GCTTTATACATTCCACGCCCAAAAGTAAATTCAGGTGCACCCCTTGGTCT
ACGATTTTTGACCCACGAAGATAACAATTTCCTCGGCATTCTTTCATAAG
ACATTCTAGACACGTGGCTNTTCGCAGGTTTGTCTGGATGTTCTAGGTCA
CCTTTATGGATTTCCATACCGAAAAGATCGAAATGTTCAACAAGTAGCGG
TGAGTACTCAGCCAAAGTCTCGCGAGATTCGAAAAGTACTGCAGTGTCGT
CTGCATATTCGGAGTCTTCGACTGGGAATTCGAAACCTTTGGCTTTGTAA
CGACGACCCGTCATCTGGAAATCATTTTTTGTGTGGAAAAGACAGAGTGG
TCGGTTCGCTTTCTTTCTCCAGGTGATCAGTCAGTTTGAGAAAATGTCTA
AAATTGCCAAAGTTTACAACCCTGATCAAAGGTACAGAATTTTCAAGTCA
AAAGAAGAAATTGAGGAATTGCCTGAGGATTCTGATGATCTTTTCAAACG
AAATATGTTAAACAGATATATTGACCGCCCAAACACAGGGCAATTCAATA
CTATGTGTTATGCCACATTCTGTGCAAACTATACATCGGACACAAAAAAA
AATACAAATGATGAAAATGATTGGCAGCCTACTGTACTAGATGATTCAAC
AAGTGAAGTAAATCATCAAGAACCCCAAACACTTCCAAAATCAGCCAAAT
TACTCAACAGTAAGGAAAAACTTAAGCTTCGTAAAGTTCCAAAAGTTTTG
AGGTACTACACTCCTAACAAAAACAAACATCCAGAAAAGTTTTCCCACCA
TATTCTAATGTTGTTTTACCCGTTTAGATCAGAAGAGAATGATTTGAAAC
TTGATGGCTCATATGTGTTGAAGCTCAACTTAGATGAAGTCAATGCAGTT
CTTAACGAGAACAAGCAAATATTTGAACCTGATGGTCATCTTGTTGATTT
AGTACTTCAAAACTATCGCAATGACCTTATGCATAATCAAGATGCCTTTA
CTCAACAAGAAAATGATGAAGTACAAGACCTAATGAGCAACTCATCAGAC
AGTGAAAATGATGATGAAAGTCATGATATCGAAGAAAATTTTGCACCATT
TACTCAAACAGTTCATGGCTTGCAAACTGATGACCAAATCAATAGCCATA
TAAGATCTTTAAATTCTAAGCAAAGAGATATTTTTTATTTTTAATATTTA
TTTCTAAATTGGGGAAGAATGTATGTGCAAAATTCCAAGTCCAATAATCC
TGTACTACTAGAACCATTGAGAATATTTTTAACAGGTGGTGCGGGCGTAG
GAAAATCTCACTTAATTAAA
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00035417TCONS_00035417Clytia hemisphaericatranscript
TCONS_00035416TCONS_00035416Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00035416-proteinTCONS_00035416-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001311supercontigsc0001311:45734..53453 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.08	3.63	3.74	2.79	3.59	3.14	2.55	3.35	1.73	1.16	1	1.55	1.58	1.67	1.59	2.52	1.48	1.39	1.88	1.95	3.76	4.25	1.59	1.81	1.72	3.36	4.16	2.95	3.57	2.54