TCONS_00035417 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00035417
Unique Name	TCONS_00035417
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	533

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0001311:45734..53453-

transcript sequence

>TCONS_00035417 ID=TCONS_00035417|Name=TCONS_00035417|organism=Clytia hemisphaerica|type=transcript|length=533bp
ACTTcttctcaaaacaaaaattattaacTCAAAAGAAATAATCAGAAGAG
AATGATTTGAAACTTGATGGCTCATATGTGTTGAAGCTCAACTTAGATGA
AGTCAATGCAGTTCTTAACGAGAACAAGCAAATATTTGAACCTGATGGTC
ATCTTGTTGATTTAGTACTTCAAAACTATCGCAATGACCTTATGCATAAT
CAAGATGCCTTTACTcaacaagaaaatgatgaagtaCAAGACCTAATGAG
CAACTCATCAgacagtgaaaatgatgatgaaagtCATGATATCGAAGAAA
ATTTTGCACCATTTACTCAAACAGTTCATGGCTTGCAAACTGATGACCAA
ATCAATAGCCATATAAGATCTTTAAATTCTAAGCAAagagatatttttta
tttttaatatttatttctaAATTGGGGAAGAATGTATGTGCAAAATTCCA
AGTCCAATAATCCTGTACTACTAGAaccattgagaatatttttaacaGGT
GGTGCGGGCGTAGGAAAATCTCACTTAATTAAA

Run BLAST on NCBI

transcript from alignment at sc0001311:45734..53453-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00035417 ID=TCONS_00035417|Name=TCONS_00035417|organism=Clytia hemisphaerica|type=transcript|length=7720bp|location=Sequence derived from alignment at sc0001311:45734..53453- (Clytia hemisphaerica)
ACTTCTTCTCAAAACAAAAATTATTAACTCAAAAGAAATAGTAAGTATAT
AGACTTTCAACTTTACTTTTCCAGTTCCACATAGAGTTATTTTTCTAGTG
GATCTGTTTAAAGCACCTTTTTTGCCCCTCACCCTAAAAAATGATTGAGG
CGTCTTTTCTTTTTTTTTTGCCACTTTTTTTCAGATTCATCATTCACTGC
ACTGAATCTGATTGTGGTTTTTATTCCCGCCCTTCAGATTCAAGGTCGAG
AATCACCTCTGAATCTATTTGCGGCAACCCGTGGCCAGGGCAGGTGTGGA
TCCTGTGCCTGCGACCGACCGAGCTTGTGCGTATCGACAGCTCATAAAGA
ATTCAACTGCCTTGTCAGTTATTAAAGTTACAAAAAACTCTTAAAAGTAT
AATATTTTTGCAAACAATTATAGTTTGACTAGATTATTTTATACTATATA
CAGTTAGAGCAGTTTTTCTATCTGTGCGCAAAGATGATATCTATTGCGTT
ATATCGTGCACGCATAGGAAGCTTTGCTTTTACATCTCAGAAAAATGTGA
AATGTATCGCTAAATCTATTGTTGTTGGNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNACACACCTTTAGATTTTCTGCATCTTTCAAAAAATGGAATTTTTG
TTCAATATCCCAACAACGTAGTGTACAAAGTGGGAGATCCAAACCTTATT
TTTTTTAAAGCAAATTACACGCTTCTATTATCAGGCGATATAGAACTTAA
CCCAGGCCCAACTGTTCAAGGTTCATTTCACCAGGGCAACAGTAAATTTG
GCAAGACTGCAGGTATACAATGTTCCTCAAATTGTTTTTTTGCTATTTGC
TATGCTCAGTTGAGGAAATTATTGCTATGGAAGACTCATGATTTGGATTA
TGTTTTAGATCAAGGCGATTTGAATTTCAAAAAGTTGGGAATCACAGGAA
AGTCTCCATTTGTTGAAGAGTTTTCTAAGACAATTGACATAGGAGGTAGC
ACTTGTGCACTGAATTTCAATATTTTTGAAGGCTATTTTGAGACTGGTGA
TATTTCAGTAAATTTTGTTCAGGAGGAACTCTTATTACAACATTCTGGTG
CAGTTTTAGTGATAGCTGGAAATTGCTTAGCTGTGATGCACTATAACAAA
AATTATTTTGACTCGCATAGCAGAGACTCCGAAGGCCATCAAGTTGAAGG
CAGTATTGGAACTTCAANCCGAGCTTGTGCGTATCGACAGCTCATAAAGA
ATTCAACTGCCTTGTCAGTTATTAAAGTTACAAAAAACTCTTAAAAGTAT
AATATTTTTGAAAACAATTGTAATTTGACTAGATTATTTTATACTATATA
CAGTTAGAGCAGTTTTTCTATCTGTGCGCAAAGATGATATCTATTGCGTT
ATATCGTGCACGCATAGGAAGCTTCGCTTTTACATCTCAGAAAAATGTGA
AATGTATCGCTAAATCTATTGTTGTTGGTTCTGACCTATCCAATAATGCT
CTTTTAAAACTATTGAGAGNACAACTTACAAGAAATTAAACAGTATATAA
GATCTGAGTATAAGAACATAAATCTTTTCAATATCATTTATCTCAAAACT
GATTTTCATGATTAGGAAAGTATAAATAGTACTGTATCAAGGCAAGTATC
ACGCAGACAAAAAAATTTTTCACAAAAGAGATCAGTTGAAAAGATTAAAG
GTACTGATCAATATAAAGATTTATTGGAAAAACAAAACGCTGCTCAGAAA
AGGTCACCNGAGCTAACAGAGCTTTACACACCTTTAGATTTTCTTCATCT
TTCAAAAAATGGAATTTTTGTTCAATATCCCAACAACGTAGTGTACAAAG
CAGGAGATCCAAACTTTATTTTTTTTAAAGCAAATTACACGCTTCTATTA
TCAGGCGATATAGAACTTAACCCAGGCCCAACTGTTCAAGGTTCATTTCA
CCAGGGCAACAGTAAATTTGGCNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNCTCGTTTGATGGTAATTTCTACGTATGCACAACCTGTCATAGA
AAATTAATGAAGGGAGAAATCCCATGCCAGTCTGTTTCTAACAAACTTCA
AATTTTTGATCTCCCAGATCATCTAAGTGATATAAGAAAATTGGAAAGAA
TTTTAGTGGCTCAAAGAATTTTATTTTCAAAAGTCATGATCATGCGTAAA
GGTGGATTCCCCAAATAGCAAGGTGCAATATGCAATGTTCCTATTGAAAC
ACCAGGTGTATGTAAAGTACTTCCTAGAGGAAGTTATAGTAGTGGTGTAA
TAAATGTTGAATTAAAAAGAAAAATATGCTACAAAAACCCTGTTATTTCG
CAGCAAGTAAGACGACAAATTTTTTTTGAAACTTTGGACTTTTTAGTGAA
TAATAATCCTTTGTATCATGATATAAATATTGATATGTCAATAATTGACC
AAATGAATAATGATGAATAAGTTGAAAGGGTTTTATCAAATAATGATTCC
ATATCAAACGCTTCTTCCAATAATATAAGATTTGTTGATGATACAACAGT
TACTTTAATCAAGCCTTTTGAAGAGCAATTAGAGAATGAATTTGATTCTG
ATGATCCACTCAGTGCGTATCGGACACCAACATGTGAAACAGTCATTGTA
TCAGAAGTGCGAAACATTATTTTAGATGATGAAAATGCAATTTTAGCTCC
GGGTGAAGGTCAAACCCCCAATTAATTAACTCAAGATGAATTTTGTGAAG
AGCCTGCCCATCCTCATCTTTTTCCTACTGGGAAATTTGGATATAACGTA
GAGCGAGATATAAAATTGTCGCCAACAAAGTACTTTAATCAGCGTCTTTT
AAATTACACTCAAAAGTTTGCTTCGGATTNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNTTTTTGCTCACAAAACTTTACTACAGCTTAATC
TTAGAAGTAAAATCAATATCGCAATGAGAATTTCAAATTCCAACTTGACT
GCGGGACTATTAGCAAAAAATTTTAATGATACAATTCAAAATTGCGTAGC
ATCTGATAATGCATACAAGTTTATGAGTACTATAAAAGGAACCCCTGCAT
TCTGGCAACATATGTTATCTGATGTTCTTGCAATGGTTAAACAACTTGGT
GTCCCAACATACTTTATGACTCTCTCTTGTGCAGATTTACGATGGGAGGA
ATTTGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGCGTCAA
TATCAATATAGAAAAGAGTTGTTTTTCAAAGAGATTATAATGGATGGCCA
ACTTGGAAAAATTACATACTATGCTCTCAGAGTAGAATTTACTTTCAAGG
GTAGTCCACATGATCATTGTTTGCTTTGGGCTAAAGATGTTCCAAAACTT
GAAAATGGGAAAGAAAAGTATATTGAACACATAGATAGTGTTATTTCTGC
TAATGTTCCTGAGAGAGAAGAAAGTCCTGAATTATGGAAGTTAGTCGNAC
CAGACAAAGATCAGCATTTGTTTCTAAAACGTGACCCATATTCTTGTTTT
GTCAACAATTATTTTGCAGAAGGCCTCCTAGCATGGGAGGTCAACATCGA
TATTCAGCCAGTCTTTAATGCATACAAGGCAGTTACATACATGCGTGCCT
ATTTTTCAAAAAGTGAAGATAAGTGTTCAACTGCAATGCAAGAAGCATTA
AAACAGGCCAAAGATTCAAATGACAGTCAGTTTGAGAAGAGAGAGAGAGT
GAGAGAGAGAGTGAACCATCCTAGATCATTAGGAATTGGCCTAGAAAAAT
TAAATATTAAATAAAATATCTCTAGGAAATTACTACGCGTAATAAAGCAA
AACAATATAGCACTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCATTCACAACGAT
CTTGCGCCAAAACAAACCAATTATCTTTACTGATATTAGCACGACGAAGT
GCTTTATACATTCCACGCCCAAAAGTAAATTCAGGTGCACCCCTTGGTCT
ACGATTTTTGACCCACGAAGATAACAATTTCCTCGGCATTCTTTCATAAG
ACATTCTAGACACGTGGCTNTTCGCAGGTTTGTCTGGATGTTCTAGGTCA
CCTTTATGGATTTCCATACCGAAAAGATCGAAATGTTCAACAAGTAGCGG
TGAGTACTCAGCCAAAGTCTCGCGAGATTCGAAAAGTACTGCAGTGTCGT
CTGCATATTCGGAGTCTTCGACTGGGAATTCGAAACCTTTGGCTTTGTAA
CGACGACCCGTCATCTGGAAATCATTTTTTGTGTGGAAAAGACAGAGTGG
TCGGTTCGCTTTCTTTCTCCAGGTGATCAGTCAGTTTGAGAAAATGTCTA
AAATTGCCAAAGTTTACAACCCTGATCAAAGGTACAGAATTTTCAAGTCA
AAAGAAGAAATTGAGGAATTGCCTGAGGATTCTGATGATCTTTTCAAACG
AAATATGTTAAACAGATATATTGACCGCCCAAACACAGGGCAATTCAATA
CTATGTGTTATGCCACATTCTGTGCAAACTATACATCGGACACAAAAAAA
AATACAAATGATGAAAATGATTGGCAGCCTACTGTACTAGATGATTCAAC
AAGTGAAGTAAATCATCAAGAACCCCAAACACTTCCAAAATCAGCCAAAT
TACTCAACAGTAAGGAAAAACTTAAGCTTCGTAAAGTTCCAAAAGTTTTG
AGGTACTACACTCCTAACAAAAACAAACATCCAGAAAAGTTTTCCCACCA
TATTCTAATGTTGTTTTACCCGTTTAGATCAGAAGAGAATGATTTGAAAC
TTGATGGCTCATATGTGTTGAAGCTCAACTTAGATGAAGTCAATGCAGTT
CTTAACGAGAACAAGCAAATATTTGAACCTGATGGTCATCTTGTTGATTT
AGTACTTCAAAACTATCGCAATGACCTTATGCATAATCAAGATGCCTTTA
CTCAACAAGAAAATGATGAAGTACAAGACCTAATGAGCAACTCATCAGAC
AGTGAAAATGATGATGAAAGTCATGATATCGAAGAAAATTTTGCACCATT
TACTCAAACAGTTCATGGCTTGCAAACTGATGACCAAATCAATAGCCATA
TAAGATCTTTAAATTCTAAGCAAAGAGATATTTTTTATTTTTAATATTTA
TTTCTAAATTGGGGAAGAATGTATGTGCAAAATTCCAAGTCCAATAATCC
TGTACTACTAGAACCATTGAGAATATTTTTAACAGGTGGTGCGGGCGTAG
GAAAATCTCACTTAATTAAA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_020704	XLOC_020704	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00035417-exon-sc0001311-1575043694:53414..53453	TCONS_00035417-exon-sc0001311-1575043694:53414..53453	Clytia hemisphaerica	exon
TCONS_00035417-exon-sc0001311-1575043694:45734..46226	TCONS_00035417-exon-sc0001311-1575043694:45734..46226	Clytia hemisphaerica	exon
TCONS_00035417-exon-sc0001311-1510915933:53414..53453	TCONS_00035417-exon-sc0001311-1510915933:53414..53453	Clytia hemisphaerica	exon
TCONS_00035417-exon-sc0001311-1510915933:45734..46226	TCONS_00035417-exon-sc0001311-1510915933:45734..46226	Clytia hemisphaerica	exon
TCONS_00035417-exon-sc0001311-1491911889:53414..53453	TCONS_00035417-exon-sc0001311-1491911889:53414..53453	Clytia hemisphaerica	exon
TCONS_00035417-exon-sc0001311-1491911889:45734..46226	TCONS_00035417-exon-sc0001311-1491911889:45734..46226	Clytia hemisphaerica	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0001311	supercontig	sc0001311:45734..53453 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.000179495	0	0	0	0.919061	1.02527	0	0.399487	0.182635	0.183678	0	0	0.190122	0.247614	0.231759	0.47817	0	0	0.207941	0.379433	0.873427	0.821863	0.71156	0	0	0.870923	0.49667	0	0.45059	0

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00035417 vs. Swiss-Prot (Human)

BLAST of TCONS_00035417 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00035417 (transcript) - C. hemisphaerica