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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00035416 ID=TCONS_00035416|Name=TCONS_00035416|organism=Clytia hemisphaerica|type=transcript|length=1383bp
CATTCACAACGATCTTGcgccaaaacaaaccaattatCTTTACTGATATT
AGCACGACGAAGTGCTTTATACATTCCACGCCCAAAAGTAAATTCAGGTG
CACCCCTTGGTCTACGATTTTTGACCCACGAAGATAACAATTTCCTCGGC
ATTCTTTCATAAGACATTCTAGACACGTGGCTNTTCGCAGGTTTGTCTGG
ATGTTCTAGGTCACCTTTATGGATTTCCATACCGAAAAGATCGAAATGTT
CAACAAGTAGCGGTGAGTACTCAGCCAAAGTCTCGCGAGATTCGAAAAGT
ACTGCAGTGTCGTCTGCATATTCGGAGTCTTCGACTGGGAATTCGAAACC
TTTGGCTTTGTAACGACGACCCGTCATCTGGAAATCATTTTTTGTGTGGA
AAAGACAGAGTGGTCGGTTCGCTTTCTTTCTCCAGGTGATCAGTCAGTTT
GAGAAAATGTCTAAAATTGCCAAAGTTTACAACCCTGATCAAAGGTACag
aattttcaagtcaaaagaagaaattgaggAATTGCCTGAGGATTCTGATG
atcttttcaaacgaaatatGTTAAACAGATATATTGACCGCCCAAACACA
GGGCAATTCAATACTATGTGTTATGCCACATTCTGTGCAAACTATACATC
GGacacaaaaaaaaatacaaatgatgaaaatgattggcAGCCTACTGTAC
TAGATGATTCAACAAGTGAAGTAAATCATCAAGAACCCCAAACACTTCCA
AAatcagccaaattactcaacagTAAGGAAAAACTTAAGCTTCGTAAAGT
TCCAAAAGTTTTGAGGTACTACACtcctaacaaaaacaaacatccagAAA
AGTTTTCCCACCATATTCTAATGTTGTTTTACCCGTTTAGATCAGAAGAG
AATGATTTGAAACTTGATGGCTCATATGTGTTGAAGCTCAACTTAGATGA
AGTCAATGCAGTTCTTAACGAGAACAAGCAAATATTTGAACCTGATGGTC
ATCTTGTTGATTTAGTACTTCAAAACTATCGCAATGACCTTATGCATAAT
CAAGATGCCTTTACTcaacaagaaaatgatgaagtaCAAGACCTAATGAG
CAACTCATCAgacagtgaaaatgatgatgaaagtCATGATATCGAAGAAA
ATTTTGCACCATTTACTCAAACAGTTCATGGCTTGCAAACTGATGACCAA
ATCAATAGCCATATAAGATCTTTAAATTCTAAGCAAagagatatttttta
tttttaatatttatttctaAATTGGGGAAGAATGTATGTGCAAAATTCCA
AGTCCAATAATCCTGTACTACTAGAaccattgagaatatttttaacaGGT
GGTGCGGGCGTAGGAAAATCTCACTTAATTAAA Run BLAST on NCBI protein sequence of TCONS_00035416-protein >TCONS_00035416-protein ID=TCONS_00035416-protein|Name=TCONS_00035416-protein|organism=Clytia hemisphaerica|type=polypeptide|length=266bp
MSKIAKVYNPDQRYRIFKSKEEIEELPEDSDDLFKRNMLNRYIDRPNTGQ
FNTMCYATFCANYTSDTKKNTNDENDWQPTVLDDSTSEVNHQEPQTLPKS
AKLLNSKEKLKLRKVPKVLRYYTPNKNKHPEKFSHHILMLFYPFRSEEND
LKLDGSYVLKLNLDEVNAVLNENKQIFEPDGHLVDLVLQNYRNDLMHNQD
AFTQQENDEVQDLMSNSSDSENDDESHDIEENFAPFTQTVHGLQTDDQIN
SHIRSLNSKQRDIFYF Run BLAST on NCBI transcript from alignment at sc0001311:45734..47116- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00035416 ID=TCONS_00035416|Name=TCONS_00035416|organism=Clytia hemisphaerica|type=transcript|length=1383bp|location=Sequence derived from alignment at sc0001311:45734..47116- (Clytia hemisphaerica)
CATTCACAACGATCTTGCGCCAAAACAAACCAATTATCTTTACTGATATT
AGCACGACGAAGTGCTTTATACATTCCACGCCCAAAAGTAAATTCAGGTG
CACCCCTTGGTCTACGATTTTTGACCCACGAAGATAACAATTTCCTCGGC
ATTCTTTCATAAGACATTCTAGACACGTGGCTNTTCGCAGGTTTGTCTGG
ATGTTCTAGGTCACCTTTATGGATTTCCATACCGAAAAGATCGAAATGTT
CAACAAGTAGCGGTGAGTACTCAGCCAAAGTCTCGCGAGATTCGAAAAGT
ACTGCAGTGTCGTCTGCATATTCGGAGTCTTCGACTGGGAATTCGAAACC
TTTGGCTTTGTAACGACGACCCGTCATCTGGAAATCATTTTTTGTGTGGA
AAAGACAGAGTGGTCGGTTCGCTTTCTTTCTCCAGGTGATCAGTCAGTTT
GAGAAAATGTCTAAAATTGCCAAAGTTTACAACCCTGATCAAAGGTACAG
AATTTTCAAGTCAAAAGAAGAAATTGAGGAATTGCCTGAGGATTCTGATG
ATCTTTTCAAACGAAATATGTTAAACAGATATATTGACCGCCCAAACACA
GGGCAATTCAATACTATGTGTTATGCCACATTCTGTGCAAACTATACATC
GGACACAAAAAAAAATACAAATGATGAAAATGATTGGCAGCCTACTGTAC
TAGATGATTCAACAAGTGAAGTAAATCATCAAGAACCCCAAACACTTCCA
AAATCAGCCAAATTACTCAACAGTAAGGAAAAACTTAAGCTTCGTAAAGT
TCCAAAAGTTTTGAGGTACTACACTCCTAACAAAAACAAACATCCAGAAA
AGTTTTCCCACCATATTCTAATGTTGTTTTACCCGTTTAGATCAGAAGAG
AATGATTTGAAACTTGATGGCTCATATGTGTTGAAGCTCAACTTAGATGA
AGTCAATGCAGTTCTTAACGAGAACAAGCAAATATTTGAACCTGATGGTC
ATCTTGTTGATTTAGTACTTCAAAACTATCGCAATGACCTTATGCATAAT
CAAGATGCCTTTACTCAACAAGAAAATGATGAAGTACAAGACCTAATGAG
CAACTCATCAGACAGTGAAAATGATGATGAAAGTCATGATATCGAAGAAA
ATTTTGCACCATTTACTCAAACAGTTCATGGCTTGCAAACTGATGACCAA
ATCAATAGCCATATAAGATCTTTAAATTCTAAGCAAAGAGATATTTTTTA
TTTTTAATATTTATTTCTAAATTGGGGAAGAATGTATGTGCAAAATTCCA
AGTCCAATAATCCTGTACTACTAGAACCATTGAGAATATTTTTAACAGGT
GGTGCGGGCGTAGGAAAATCTCACTTAATTAAA Coding sequence (CDS) from alignment at sc0001311:45734..47116- >TCONS_00035416 ID=TCONS_00035416|Name=TCONS_00035416|organism=Clytia hemisphaerica|type=CDS|length=801bp|location=Sequence derived from alignment at sc0001311:45734..47116- (Clytia hemisphaerica)
ATGTCTAAAATTGCCAAAGTTTACAACCCTGATCAAAGGTACAGAATTTT
CAAGTCAAAAGAAGAAATTGAGGAATTGCCTGAGGATTCTGATGATCTTT
TCAAACGAAATATGTTAAACAGATATATTGACCGCCCAAACACAGGGCAA
TTCAATACTATGTGTTATGCCACATTCTGTGCAAACTATACATCGGACAC
AAAAAAAAATACAAATGATGAAAATGATTGGCAGCCTACTGTACTAGATG
ATTCAACAAGTGAAGTAAATCATCAAGAACCCCAAACACTTCCAAAATCA
GCCAAATTACTCAACAGTAAGGAAAAACTTAAGCTTCGTAAAGTTCCAAA
AGTTTTGAGGTACTACACTCCTAACAAAAACAAACATCCAGAAAAGTTTT
CCCACCATATTCTAATGTTGTTTTACCCGTTTAGATCAGAAGAGAATGAT
TTGAAACTTGATGGCTCATATGTGTTGAAGCTCAACTTAGATGAAGTCAA
TGCAGTTCTTAACGAGAACAAGCAAATATTTGAACCTGATGGTCATCTTG
TTGATTTAGTACTTCAAAACTATCGCAATGACCTTATGCATAATCAAGAT
GCCTTTACTCAACAAGAAAATGATGAAGTACAAGACCTAATGAGCAACTC
ATCAGACAGTGAAAATGATGATGAAAGTCATGATATCGAAGAAAATTTTG
CACCATTTACTCAAACAGTTCATGGCTTGCAAACTGATGACCAAATCAAT
AGCCATATAAGATCTTTAAATTCTAAGCAAAGAGATATTTTTTATTTTTA
A
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00035416-exon-sc0001311-1575043694:45734..47116 | TCONS_00035416-exon-sc0001311-1575043694:45734..47116 | Clytia hemisphaerica | exon |
| TCONS_00035416-exon-sc0001311-1510915933:45734..47116 | TCONS_00035416-exon-sc0001311-1510915933:45734..47116 | Clytia hemisphaerica | exon |
| TCONS_00035416-exon-sc0001311-1491911889:45734..47116 | TCONS_00035416-exon-sc0001311-1491911889:45734..47116 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001311 | supercontig | sc0001311:45734..47116 - |
Blast
The following BLAST results are available for this feature:
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