XLOC_013012 (gene) - C. hemisphaerica

Overview
NameXLOC_013012
Unique NameXLOC_013012
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000444:14753..21828+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_013012 ID=XLOC_013012|Name=XLOC_013012|organism=Clytia hemisphaerica|type=gene|length=7076bp|location=Sequence derived from alignment at sc0000444:14753..21828+ (Clytia hemisphaerica)
ACGCGcgtgatttttttctctttgtagGCACGTCGGACGCTTATCTTCGT
AGCTTATCTTTGAGAGTCTAAGATGCGTGATTTAGAGGAGAGGGGGTGAT
ACAGGTAAATACAATATGGCGTTTTTGAAGCGGACGACAAACATTGACAT
TATTTTTCTGCTCTTAATTCTACCAGCTTTTAATATATATTTCTGCTATC
TATCGAAATAGAAAGTGTTTTGATTTCTCCAGGAGCATAGAAAAGTCATA
CCATGCCGACACACAAAAGTAGGATGGTGTGGACAGggcaaaattttccc
ctcaatttttgaaaaccaaactacctaattttattatttgaggCTTAGCT
tataggcggcaatcacaaatatcttcattttgccgtctcgttgggtctaa
aaagtgagtcggtcggttggtcggtTGGTCATAgaaatttttgggttttc
ttcTTCTCGTCGGAcctccatcatccatttttgccagCCAGCCAGAACAA
TCGCGTGTTATGGGTGGTTtcaaattgggctcttccagaaaaaaattgat
ataggGGGTGGATGACgggaattttcagataaaaaaagcactcggaaatc
cagtcaatttttcaaagtgctttggAAATTctgctcaattttttatttga
acccttggaaattccacataatttgtcaaagttttgaaaaaggtattggg
ggccgtcgacattcgactttcaaattttttaactgcatttggccgttaag
ggggggagggggtcgacCATGTGCCGTTATAAGGGAAGGTCGAAAATATC
TTTAGGGGTCAACTCACCACATTATCAATTCTTTTCACcagaaaatatcg
atttttgagacatttaatttttgacgtcaaatacaatATGTACGGCCACG
CTCTTGcgaatgaatgaaaaagaatggcaacaatcgatgaaaaacccact
gaaaatgctgaaaaatatggATCCTGTACCGCCAATAAATGCTTCACGAA
TGAAATAATAAAGGATAATGACATATTACAATGTAGGAAATGCCAGAGAT
TCGTTCATTATGCTTGTTTGGAGCTTCCCGCATACCAAATTCAGCTTTGT
CTGCAATACAAAAGCCGACGCttcgaatgtaaaaaatgtGTTACAGTCAC
GCCAATACTTTTGGAAAANNNNNNNNNNNNNNNNNTCGTTCATTATGCTT
GTTCGGAGCTTCCCGCATACCAAATTCAGCTTTGTCTGCAATACAAAAGC
CGACGCttcgaatgtaaaaaatgtGTTACAGTCACACCAatacttttgga
aaaaatcaaaacaagtaagCAAAGAGTCAGAAGTAACCAAATAACGCAAA
CAATAACGGAAGCAGAATGTCGAGATGGAGGTCAGCAAATATTTGAATCT
GTTTTCAACACTAGATTGCATAATCTAGAGAAGAAAATGGAGGAACTTAT
AGCTATGAACAAAGAAGACGTCGCTAAAGAACCAAAACGGGCAACATATG
CAGATATCACAAAGGAAGAGATGAAGAAACAGGAGGTTATCAtcaagaaa
tttatcaaaaatgaaaaagaagaaagagaagaCGATCGCTGGAAGATCTT
AACTAGATGTAACATCATTGTCCATCATTTAGGTGAAAATAAAGATGAGA
ACAAAGAGGAACAGCGGGCCGGTGACAAAGATTACGTGGAGGAAGTTGTA
GNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNCTCGAAAGGATGATATGTTCAAGA
CGAAAAGATGGCGGCCATTGAAAGTAACGTTGGCcaatgaagaagacaag
aaaagAATTATGGCCTCAGTCCATAAACTAAACAAAGATAATTTCAGTGT
AACAGATGACTTCTCCAAGAAAGAACTTGAAACCATTAAAGAATGAGAAG
GATGAATGCTGTgtatggaaagtgagaggtagcCCTCGGGCTAAGCTCTA
CTttaagaaaatatgtaaaaagaccGTTATCGATgaactgtaaatttgaa
ttagattgtttcatagaggtcaatagacctgcgaaatatactcCTATACT
TACTTCGTGATACTTCGTTATTGATTATGTACTTTATGGTACTCATCCAA
TTCGTTGAATCCGATGATTGACCATTACTGTTGTACTGTTAGANNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACCATTACTGTTGTAC
TGTTAGAGTCAGCTCTCCTGAAGTTGAAATAATTAGGAAGCAGCGGTTCG
TCTGGCAGTGTACTGAGGAATTGGTCAAGATGCTGTTTAAAGGTTTGTTT
GGTACAGTTTGTTAGGTTTCTAAGGGATTTTGGCAGAGCATTGAAGAGCC
TTGGTCCTTCTTGTGAGAGACAACCTCTccagatatttttatgtttgaca
tttACAGCTTTCAAATTGCATTTTCTNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNTTTTTGGATAGCGTTGTGTTGACAGAGACTCTCTGTGTTCTCC
CTGTAAGAAATGACTTTATCCAGGATAGAAGTTTTCCACAAATGCCATTT
CTTTCAAGtttctataaataaataaataaataattaactcgtaagattaa
ggtgcaccataaattgacgagttaattaactcgtaggattatggtgcacc
ataaattgacgagttaaattatctacttgtgacgtcataatttcccattg
atgacgtcacatttaacgtaactcgtgttttttgtaactcgtgtttttta
actcgtgttttttaacttgTGTTTTTTAACTTGTGTTTTCTGAGCGTCAT
TATGAACACTGTATGTAattataaacaaagtcaaaatgcagTGAATGCGC
TAGCTAGAAATTGCTCGCAAAAAAACGGCAATAATAAAAGTTATCATCAT
agacagaaaaagtccgacaaatttaccgactcaccgactcaattctaatc
aattttcgagagtccgTCGGGCGACGCGACATGaatatatttgtgattgc
cTCCTTAGGCCCTTACTTAGGACTATACAGACAAGTATTATATATAGTAA
TACATGATATTATTATAACATCAACACTCGATTATGATACATGCAGATGA
CCTTTCAAAAAAGACTGTGTCACTGCcagttttcagagcatgtcatCGTT
GCCCCCAAGGAAAATTTCCAACATAAAACTCTGCCCATAAAATCCGTCTC
CCACCACAAAAAAAGCCAGAAAGACAGGTAAATATAGCcatttttcaatg
attttgtcCCTGAACTGtagatattatcaaaattttgattgcGCCTGCCC
CTGCCTGCCCTTAAAAAGTGATGTGAGCACTCTTTGCCCTTGAGATTTTG
ATGATTTCTGTCATACTCTGAAAACTGGGGTCACTGCCACTGGGATTATA
AATAGTTGTTTTGCTTTGGCGAACTCAATGGTCTTTTGAATAACAATTAC
CGTCAGTCAggcaggcacatcctggcaaatgaatggggtatttttcactt
gcgattggtggcaaatgcaaggggtcgaaaacaaaagtgatgtaatagca
ctgaataccccacgcaattgaaccgggttggaaatattttgcttcatttc
aaagaactgcatagatgaaattgtttttccattggtcaattttgtcttcg
aaaattgaagaaacttttaacgaaaaaataaagttcccagttttcttcct
tttttcccattttcagtttgaagatcatttttattcattttcacgctttt
agcctgagacgtcctatctcatttacactgggtgacgaataccccatgca
aatgctcaccccgttcatttgccaggatgtgcctgactgaccgtaacttg
gtctaatgtcgacacccttttttatcagctgaaatttatagaaaggctGA
AACGTGTGATAGACACCATCTAAAATTTGATGCCCTTCTGAACAGTGACT
GGGCACAAAGATTTGAGTTTAGCAAGTATTTTCAGCTTGTGGTAGCTTTG
AGATGTCAACTACAAAACTAAATTTCGGCACAaatgttttgtcttttttt
tttgtctaagttttaaaatttatgttatgaaacaatttttttttattgca
tAAATAGATGATAAAAACAATAGTTTGGTGGACATGTGGAGGTGCTTTCG
CTGCCCTATACGCAAATAAAGTACAAGGCTTACATTTCCTTTACAGTAAG
TTTCATCTTTGATATTTAAGTTTGTTTGTCTagtttagaaaaaagttgct
gCTTTAATAAACAGTAaatgtaatgttgtttttaCATGTCATATTGAGGC
TTTCACATCAATCATTAGTAGAGGACATCTTCTGCTAAACTATTTGaatt
cttatacaaaaaaattcacttcCGATCGCAAACACCTGAAACACGTTGTC
GAATTTGctaatttctacaaaaagttatGACGAAACGCCTGTAAGGCTAA
CATATTCTCCCTTGTATATACTCTTCTTCCTATaaaacaattatttttat
tatagaaCCAAGAAGAATTGTATTAGTGacacttcttggattggctgtTG
GATACAAAGTTCATGAATTTGAAAGAGATTTACCACAACTAATGGTAGAG
GCTAGACGTGAACATGTTTTTGCTCCAAAATCTCGTGAAATGTTACTGAC
ATACCAAGCTATGGTGCGAAGAAATCAAGAGCAAGTGACTGAAGGAGGTA
CCTGCATTTCCTCATACTTTTATCTCGttgaatttcgaattttggggTAT
TGTTAATCGGTTTTTAAGTGTATATACCATACTTGTTCCTTcacaagcag
aaactttcataaaaatacactttttgtaTACAGCTTTTTGGAcccacccc
ggtggaggtcctataaattaaccgttgttcgttcgttcgttcgttcgttc
gttcgttcgttcgttcgttcgttcgttcgttcgttcgttcgtTCGTTCGT
CTGTTCTCCTGATATACCTTCAGGGAAATATTTTGCGAGTTATTCAAAAT
TGCAACTTTCCATACAGTAGGTGGCCTCTAAAAGTATATTATCGGGAAGC
TTGTCCTGCACAAGGCACTGTCATTTTGGACTGCACTCAAGACAAAGGAT
TCGCTAGCATACTTAAGGCGTACAAACTTGCGTGggcagaaattttcgcg
aggtcTAAAAATCgcacatttactttcgcgaattcgaTGAAAAACCAGTT
TCACGAGCATAAACATTCgcgaaatgaaaattttcacacgAAAAAATGGC
TCACAAgtacaaatacttcttggattggatTAAAGCTTTTGTCCTTTGAC
CAAGAGGCTTTAACTGGCTAAAAAAGTGTcataaatcttacatttttttt
attctggATTAGAAGTTTtgcagattttctattttgtcaaggatTTTTCA
CGAGCATAAAATTTGGTGAACGGCCCCTTCGAGAGTTTTCAAAGACTCac
aaaaagggctaaaattcgtgaaaatcgcgaaaaagtttctgctcatgaaa
gtttgtacgcctagtAAAGTATATCAGAAATTTAGGTAGTTCCAGTGTAA
GCTTGATAACCATATGCGATGATTCTATTTGATCNTAGGTAGTTCCAGTG
TAAGCTTGATAACCATATGCGAtgattctttttgattttttttacagatt
tcGAAGTTACagaagaagaggaagaagaagacGAAGATGAAGAGTAGACA
AATAACAAACAATTTTTTCGAATGTGTATTATATTTTTATCCCACTAGAT
ATCCTGTTTCtaaacaatatttttaaaattaatccacttctGGTGTCTTT
TGTTCATTTACTGTACTCTCGCATGGTAAGGGGCTATTCTTTAGGGCTTA
TGACAACAATTACCTTTGTGATTTTCTATGGCCTATTACCTAAAGAATTA
CCAGTTTCTTTTTGCTTGCTTTCGTAGCTCTATGGCTAAATTTATcgtat
tttatgaaatttgtcgttctttttgtctatttttattaaaTGTTGGATTC
TTTAGATTAACCTCCTCCACATATCATATCTATAACTCAATGCAACTGAT
TAAATAAATATTCTAGAGGCAGTGCTGCACTAATAATAGAAGGAAACAAA
TTAATCTGAACTTTTGACTCTCAAACTGCTCAAAAATTTCGAGGAAACTT
TTAGTCTCTCCACACTAAATTGGAGGAAAAATAATCGAGCAGACAACAAG
TTTTCGCCATGTCAAATATACATTCCCAATGAGCTTGTCAACCGAATTAA
TTTATACTCATCATATTTGAAATCACAATTCAAAACAACTAAATATCTAA
CGTAGATCATGAGAAAtttataaaatcatttttaaaaaagtgaCTCAATT
TTGAGTCAACAAAAATTGTAACTGAc
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00023143TCONS_00023143Clytia hemisphaericatranscript
TCONS_00023144TCONS_00023144Clytia hemisphaericatranscript
TCONS_00023145TCONS_00023145Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00023144-proteinTCONS_00023144-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000444supercontigsc0000444:14753..21828 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
95.33	93.69	125.5	146.42	93.09	73.69	73.92	73.48	72.86	56.69	56.15	64.48	43.32	48.12	55.51	60.84	104.03	114.93	25.07	24.65	84.96	76.29	67	57.79	79.03	81.34	60	42.24	41.25	36.84