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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00023145 ID=TCONS_00023145|Name=TCONS_00023145|organism=Clytia hemisphaerica|type=transcript|length=1798bp
TGATGTGAGCACTCTTTGCCCTTGAGATTTTGATGATTTCTGTCATACTC
TGAAAACTGGGGTCACTGCCACTGGGATTATAAATAGTTGTTTTGCTTTG
GCGAACTCAATGGTCTTTTGAATAACAATTACCGTCAGTCAggcaggcac
atcctggcaaatgaatggggtatttttcacttgcgattggtggcaaatgc
aaggggtcgaaaacaaaagtgatgtaatagcactgaataccccacgcaat
tgaaccgggttggaaatattttgcttcatttcaaagaactgcatagatga
aattgtttttccattggtcaattttgtcttcgaaaattgaagaaactttt
aacgaaaaaataaagttcccagttttcttccttttttcccattttcagtt
tgaagatcatttttattcattttcacgcttttagcctgagacgtcctatc
tcatttacactgggtgacgaataccccatgcaaatgctcaccccgttcat
ttgccaggatgtgcctgactgaccgtaacttggtctaatgtcgacaccct
tttttatcagctgaaatttatagaaaggctGAAACGTGTGATAGACACCA
TCTAAAATTTGATGCCCTTCTGAACAGTGACTGGGCACAAAGATTTGAGT
TTAGCAAGTATTTTCAGCTTGTGGTAGCTTTGAGATGTCAACTACAAAAC
TAAATTTCGGCACAaatgttttgtcttttttttttgtctaagttttaaaa
tttatgttatgaaacaatttttttttattgcatAAATAGATGATAAAAAC
AATAGTTTGGTGGACATGTGGAGGTGCTTTCGCTGCCCTATACGCAAATA
AAGTACAAGGCTTACATTTCCTTTACAaaCCAAGAAGAATTGTATTAGTG
acacttcttggattggctgtTGGATACAAAGTTCATGAATTTGAAAGAGA
TTTACCACAACTAATGGTAGAGGCTAGACGTGAACATGTTTTTGCTCCAA
AATCTCGTGAAATGTTACTGACATACCAAGCTATGGTGCGAAGAAATCAA
GAGCAAGTGACTGAAGGAGatttcGAAGTTACagaagaagaggaagaaga
agacGAAGATGAAGAGTAGACAAATAACAAACAATTTTTTCGAATGTGTA
TTATATTTTTATCCCACTAGATATCCTGTTTCtaaacaatatttttaaaa
ttaatccacttctGGTGTCTTTTGTTCATTTACTGTACTCTCGCATGGTA
AGGGGCTATTCTTTAGGGCTTATGACAACAATTACCTTTGTGATTTTCTA
TGGCCTATTACCTAAAGAATTACCAGTTTCTTTTTGCTTGCTTTCGTAGC
TCTATGGCTAAATTTATcgtattttatgaaatttgtcgttctttttgtct
atttttattaaaTGTTGGATTCTTTAGATTAACCTCCTCCACATATCATA
TCTATAACTCAATGCAACTGATTAAATAAATATTCTAGAGGCAGTGCTGC
ACTAATAATAGAAGGAAACAAATTAATCTGAACTTTTGACTCTCAAACTG
CTCAAAAATTTCGAGGAAACTTTTAGTCTCTCCACACTAAATTGGAGGAA
AAATAATCGAGCAGACAACAAGTTTTCGCCATGTCAAATATACATTCCCA
ATGAGCTTGTCAACCGAATTAATTTATACTCATCATATTTGAAATCACAA
TTCAAAACAACTAAATATCTAACGTAGATCATGAGAAAtttataaaatca
tttttaaaaaagtgaCTCAATTTTGAGTCAACAAAAATTGTAACTGAc Run BLAST on NCBI transcript from alignment at sc0000444:18771..21828+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00023145 ID=TCONS_00023145|Name=TCONS_00023145|organism=Clytia hemisphaerica|type=transcript|length=3058bp|location=Sequence derived from alignment at sc0000444:18771..21828+ (Clytia hemisphaerica)
TGATGTGAGCACTCTTTGCCCTTGAGATTTTGATGATTTCTGTCATACTC
TGAAAACTGGGGTCACTGCCACTGGGATTATAAATAGTTGTTTTGCTTTG
GCGAACTCAATGGTCTTTTGAATAACAATTACCGTCAGTCAggcaggcac
atcctggcaaatgaatggggtatttttcacttgcgattggtggcaaatgc
aaggggtcgaaaacaaaagtgatgtaatagcactgaataccccacgcaat
tgaaccgggttggaaatattttgcttcatttcaaagaactgcatagatga
aattgtttttccattggtcaattttgtcttcgaaaattgaagaaactttt
aacgaaaaaataaagttcccagttttcttccttttttcccattttcagtt
tgaagatcatttttattcattttcacgcttttagcctgagacgtcctatc
tcatttacactgggtgacgaataccccatgcaaatgctcaccccgttcat
ttgccaggatgtgcctgactgaccgtaacttggtctaatgtcgacaccct
tttttatcagctgaaatttatagaaaggctGAAACGTGTGATAGACACCA
TCTAAAATTTGATGCCCTTCTGAACAGTGACTGGGCACAAAGATTTGAGT
TTAGCAAGTATTTTCAGCTTGTGGTAGCTTTGAGATGTCAACTACAAAAC
TAAATTTCGGCACAaatgttttgtcttttttttttgtctaagttttaaaa
tttatgttatgaaacaatttttttttattgcatAAATAGATGATAAAAAC
AATAGTTTGGTGGACATGTGGAGGTGCTTTCGCTGCCCTATACGCAAATA
AAGTACAAGGCTTACATTTCCTTTACAGTAAGTTTCATCTTTGATATTTA
AGTTTGTTTGTCTagtttagaaaaaagttgctgCTTTAATAAACAGTAaa
tgtaatgttgtttttaCATGTCATATTGAGGCTTTCACATCAATCATTAG
TAGAGGACATCTTCTGCTAAACTATTTGaattcttatacaaaaaaattca
cttcCGATCGCAAACACCTGAAACACGTTGTCGAATTTGctaatttctac
aaaaagttatGACGAAACGCCTGTAAGGCTAACATATTCTCCCTTGTATA
TACTCTTCTTCCTATaaaacaattatttttattatagaaCCAAGAAGAAT
TGTATTAGTGacacttcttggattggctgtTGGATACAAAGTTCATGAAT
TTGAAAGAGATTTACCACAACTAATGGTAGAGGCTAGACGTGAACATGTT
TTTGCTCCAAAATCTCGTGAAATGTTACTGACATACCAAGCTATGGTGCG
AAGAAATCAAGAGCAAGTGACTGAAGGAGGTACCTGCATTTCCTCATACT
TTTATCTCGttgaatttcgaattttggggTATTGTTAATCGGTTTTTAAG
TGTATATACCATACTTGTTCCTTcacaagcagaaactttcataaaaatac
actttttgtaTACAGCTTTTTGGAcccaccccggtggaggtcctataaat
taaccgttgttcgttcgttcgttcgttcgttcgttcgttcgttcgttcgt
tcgttcgttcgttcgttcgttcgtTCGTTCGTCTGTTCTCCTGATATACC
TTCAGGGAAATATTTTGCGAGTTATTCAAAATTGCAACTTTCCATACAGT
AGGTGGCCTCTAAAAGTATATTATCGGGAAGCTTGTCCTGCACAAGGCAC
TGTCATTTTGGACTGCACTCAAGACAAAGGATTCGCTAGCATACTTAAGG
CGTACAAACTTGCGTGggcagaaattttcgcgaggtcTAAAAATCgcaca
tttactttcgcgaattcgaTGAAAAACCAGTTTCACGAGCATAAACATTC
gcgaaatgaaaattttcacacgAAAAAATGGCTCACAAgtacaaatactt
cttggattggatTAAAGCTTTTGTCCTTTGACCAAGAGGCTTTAACTGGC
TAAAAAAGTGTcataaatcttacattttttttattctggATTAGAAGTTT
tgcagattttctattttgtcaaggatTTTTCACGAGCATAAAATTTGGTG
AACGGCCCCTTCGAGAGTTTTCAAAGACTCacaaaaagggctaaaattcg
tgaaaatcgcgaaaaagtttctgctcatgaaagtttgtacgcctagtAAA
GTATATCAGAAATTTAGGTAGTTCCAGTGTAAGCTTGATAACCATATGCG
ATGATTCTATTTGATCNTAGGTAGTTCCAGTGTAAGCTTGATAACCATAT
GCGAtgattctttttgattttttttacagatttcGAAGTTACagaagaag
aggaagaagaagacGAAGATGAAGAGTAGACAAATAACAAACAATTTTTT
CGAATGTGTATTATATTTTTATCCCACTAGATATCCTGTTTCtaaacaat
atttttaaaattaatccacttctGGTGTCTTTTGTTCATTTACTGTACTC
TCGCATGGTAAGGGGCTATTCTTTAGGGCTTATGACAACAATTACCTTTG
TGATTTTCTATGGCCTATTACCTAAAGAATTACCAGTTTCTTTTTGCTTG
CTTTCGTAGCTCTATGGCTAAATTTATcgtattttatgaaatttgtcgtt
ctttttgtctatttttattaaaTGTTGGATTCTTTAGATTAACCTCCTCC
ACATATCATATCTATAACTCAATGCAACTGATTAAATAAATATTCTAGAG
GCAGTGCTGCACTAATAATAGAAGGAAACAAATTAATCTGAACTTTTGAC
TCTCAAACTGCTCAAAAATTTCGAGGAAACTTTTAGTCTCTCCACACTAA
ATTGGAGGAAAAATAATCGAGCAGACAACAAGTTTTCGCCATGTCAAATA
TACATTCCCAATGAGCTTGTCAACCGAATTAATTTATACTCATCATATTT
GAAATCACAATTCAAAACAACTAAATATCTAACGTAGATCATGAGAAAtt
tataaaatcatttttaaaaaagtgaCTCAATTTTGAGTCAACAAAAATTG
TAACTGAc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00023145-exon-sc0000444-1491911889:18771..19647 | TCONS_00023145-exon-sc0000444-1491911889:18771..19647 | Clytia hemisphaerica | exon |
| TCONS_00023145-exon-sc0000444-1510915933:18771..19647 | TCONS_00023145-exon-sc0000444-1510915933:18771..19647 | Clytia hemisphaerica | exon |
| TCONS_00023145-exon-sc0000444-1575043694:18771..19647 | TCONS_00023145-exon-sc0000444-1575043694:18771..19647 | Clytia hemisphaerica | exon |
| TCONS_00023145-exon-sc0000444-1491911889:19958..20149 | TCONS_00023145-exon-sc0000444-1491911889:19958..20149 | Clytia hemisphaerica | exon |
| TCONS_00023145-exon-sc0000444-1510915933:19958..20149 | TCONS_00023145-exon-sc0000444-1510915933:19958..20149 | Clytia hemisphaerica | exon |
| TCONS_00023145-exon-sc0000444-1575043694:19958..20149 | TCONS_00023145-exon-sc0000444-1575043694:19958..20149 | Clytia hemisphaerica | exon |
| TCONS_00023145-exon-sc0000444-1491911889:21100..21828 | TCONS_00023145-exon-sc0000444-1491911889:21100..21828 | Clytia hemisphaerica | exon |
| TCONS_00023145-exon-sc0000444-1510915933:21100..21828 | TCONS_00023145-exon-sc0000444-1510915933:21100..21828 | Clytia hemisphaerica | exon |
| TCONS_00023145-exon-sc0000444-1575043694:21100..21828 | TCONS_00023145-exon-sc0000444-1575043694:21100..21828 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000444 | supercontig | sc0000444:18771..21828 + |
Blast
The following BLAST results are available for this feature:
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