TCONS_00023144 (transcript) - C. hemisphaerica

Overview
NameTCONS_00023144
Unique NameTCONS_00023144
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1211

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00023144 ID=TCONS_00023144|Name=TCONS_00023144|organism=Clytia hemisphaerica|type=transcript|length=1211bp
ttgtgattgccTCCTTAGGCCCTTACTTAGGACTATACAGACAAGTATTA
TATATAGTAATACATGATATTATTATAACATCAACACTCGATTATGATAC
ATGCAGATGACCTTTCAAAAAAGACTGTGTCACTGCcagttttcagagca
tgtcatCGTTGCCCCCAAGGAAAATTTCCAACAAAAAAAGCCAGAAAGAC
AGATGATAAAAACAATAGTTTGGTGGACATGTGGAGGTGCTTTCGCTGCC
CTATACGCAAATAAAGTACAAGGCTTACATTTCCTTTACAaaCCAAGAAG
AATTGTATTAGTGacacttcttggattggctgtTGGATACAAAGTTCATG
AATTTGAAAGAGATTTACCACAACTAATGGTAGAGGCTAGACGTGAACAT
GTTTTTGCTCCAAAATCTCGTGAAATGTTACTGACATACCAAGCTATGGT
GCGAAGAAATCAAGAGCAAGTGACTGAAGGAGatttcGAAGTTACagaag
aagaggaagaagaagacGAAGATGAAGAGTAGACAAATAACAAACAATTT
TTTCGAATGTGTATTATATTTTTATCCCACTAGATATCCTGTTTCtaaac
aatatttttaaaattaatccacttctGGTGTCTTTTGTTCATTTACTGTA
CTCTCGCATGGTAAGGGGCTATTCTTTAGGGCTTATGACAACAATTACCT
TTGTGATTTTCTATGGCCTATTACCTAAAGAATTACCAGTTTCTTTTTGC
TTGCTTTCGTAGCTCTATGGCTAAATTTATcgtattttatgaaatttgtc
gttctttttgtctatttttattaaaTGTTGGATTCTTTAGATTAACCTCC
TCCACATATCATATCTATAACTCAATGCAACTGATTAAATAAATATTCTA
GAGGCAGTGCTGCACTAATAATAGAAGGAAACAAATTAATCTGAACTTTT
GACTCTCAAACTGCTCAAAAATTTCGAGGAAACTTTTAGTCTCTCCACAC
TAAATTGGAGGAAAAATAATCGAGCAGACAACAAGTTTTCGCCATGTCAA
ATATACATTCCCAATGAGCTTGTCAACCGAATTAATTTATACTCATCATA
TTTGAAATCACAATTCAAAACAACTAAATATCTAACGTAGATCATGAGAA
AtttataaaatcatttttaaaaaagtgaCTCAATTTTGAGTCAACAAAAA
TTGTAACTGAc
Run BLAST on NCBI

protein sequence of TCONS_00023144-protein

>TCONS_00023144-protein ID=TCONS_00023144-protein|Name=TCONS_00023144-protein|organism=Clytia hemisphaerica|type=polypeptide|length=143bp
MQMTFQKRLCHCQFSEHVIVAPKENFQQKKPERQMIKTIVWWTCGGAFAA
LYANKVQGLHFLYKPRRIVLVTLLGLAVGYKVHEFERDLPQLMVEARREH
VFAPKSREMLLTYQAMVRRNQEQVTEGDFEVTEEEEEEDEDEE
Run BLAST on NCBI

transcript from alignment at sc0000444:18443..21828+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00023144 ID=TCONS_00023144|Name=TCONS_00023144|organism=Clytia hemisphaerica|type=transcript|length=3386bp|location=Sequence derived from alignment at sc0000444:18443..21828+ (Clytia hemisphaerica)
ttgtgattgccTCCTTAGGCCCTTACTTAGGACTATACAGACAAGTATTA
TATATAGTAATACATGATATTATTATAACATCAACACTCGATTATGATAC
ATGCAGATGACCTTTCAAAAAAGACTGTGTCACTGCcagttttcagagca
tgtcatCGTTGCCCCCAAGGAAAATTTCCAACATAAAACTCTGCCCATAA
AATCCGTCTCCCACCACAAAAAAAGCCAGAAAGACAGGTAAATATAGCca
tttttcaatgattttgtcCCTGAACTGtagatattatcaaaattttgatt
gcGCCTGCCCCTGCCTGCCCTTAAAAAGTGATGTGAGCACTCTTTGCCCT
TGAGATTTTGATGATTTCTGTCATACTCTGAAAACTGGGGTCACTGCCAC
TGGGATTATAAATAGTTGTTTTGCTTTGGCGAACTCAATGGTCTTTTGAA
TAACAATTACCGTCAGTCAggcaggcacatcctggcaaatgaatggggta
tttttcacttgcgattggtggcaaatgcaaggggtcgaaaacaaaagtga
tgtaatagcactgaataccccacgcaattgaaccgggttggaaatatttt
gcttcatttcaaagaactgcatagatgaaattgtttttccattggtcaat
tttgtcttcgaaaattgaagaaacttttaacgaaaaaataaagttcccag
ttttcttccttttttcccattttcagtttgaagatcatttttattcattt
tcacgcttttagcctgagacgtcctatctcatttacactgggtgacgaat
accccatgcaaatgctcaccccgttcatttgccaggatgtgcctgactga
ccgtaacttggtctaatgtcgacacccttttttatcagctgaaatttata
gaaaggctGAAACGTGTGATAGACACCATCTAAAATTTGATGCCCTTCTG
AACAGTGACTGGGCACAAAGATTTGAGTTTAGCAAGTATTTTCAGCTTGT
GGTAGCTTTGAGATGTCAACTACAAAACTAAATTTCGGCACAaatgtttt
gtcttttttttttgtctaagttttaaaatttatgttatgaaacaattttt
ttttattgcatAAATAGATGATAAAAACAATAGTTTGGTGGACATGTGGA
GGTGCTTTCGCTGCCCTATACGCAAATAAAGTACAAGGCTTACATTTCCT
TTACAGTAAGTTTCATCTTTGATATTTAAGTTTGTTTGTCTagtttagaa
aaaagttgctgCTTTAATAAACAGTAaatgtaatgttgtttttaCATGTC
ATATTGAGGCTTTCACATCAATCATTAGTAGAGGACATCTTCTGCTAAAC
TATTTGaattcttatacaaaaaaattcacttcCGATCGCAAACACCTGAA
ACACGTTGTCGAATTTGctaatttctacaaaaagttatGACGAAACGCCT
GTAAGGCTAACATATTCTCCCTTGTATATACTCTTCTTCCTATaaaacaa
ttatttttattatagaaCCAAGAAGAATTGTATTAGTGacacttcttgga
ttggctgtTGGATACAAAGTTCATGAATTTGAAAGAGATTTACCACAACT
AATGGTAGAGGCTAGACGTGAACATGTTTTTGCTCCAAAATCTCGTGAAA
TGTTACTGACATACCAAGCTATGGTGCGAAGAAATCAAGAGCAAGTGACT
GAAGGAGGTACCTGCATTTCCTCATACTTTTATCTCGttgaatttcgaat
tttggggTATTGTTAATCGGTTTTTAAGTGTATATACCATACTTGTTCCT
TcacaagcagaaactttcataaaaatacactttttgtaTACAGCTTTTTG
GAcccaccccggtggaggtcctataaattaaccgttgttcgttcgttcgt
tcgttcgttcgttcgttcgttcgttcgttcgttcgttcgttcgttcgttc
gtTCGTTCGTCTGTTCTCCTGATATACCTTCAGGGAAATATTTTGCGAGT
TATTCAAAATTGCAACTTTCCATACAGTAGGTGGCCTCTAAAAGTATATT
ATCGGGAAGCTTGTCCTGCACAAGGCACTGTCATTTTGGACTGCACTCAA
GACAAAGGATTCGCTAGCATACTTAAGGCGTACAAACTTGCGTGggcaga
aattttcgcgaggtcTAAAAATCgcacatttactttcgcgaattcgaTGA
AAAACCAGTTTCACGAGCATAAACATTCgcgaaatgaaaattttcacacg
AAAAAATGGCTCACAAgtacaaatacttcttggattggatTAAAGCTTTT
GTCCTTTGACCAAGAGGCTTTAACTGGCTAAAAAAGTGTcataaatctta
cattttttttattctggATTAGAAGTTTtgcagattttctattttgtcaa
ggatTTTTCACGAGCATAAAATTTGGTGAACGGCCCCTTCGAGAGTTTTC
AAAGACTCacaaaaagggctaaaattcgtgaaaatcgcgaaaaagtttct
gctcatgaaagtttgtacgcctagtAAAGTATATCAGAAATTTAGGTAGT
TCCAGTGTAAGCTTGATAACCATATGCGATGATTCTATTTGATCNTAGGT
AGTTCCAGTGTAAGCTTGATAACCATATGCGAtgattctttttgattttt
tttacagatttcGAAGTTACagaagaagaggaagaagaagacGAAGATGA
AGAGTAGACAAATAACAAACAATTTTTTCGAATGTGTATTATATTTTTAT
CCCACTAGATATCCTGTTTCtaaacaatatttttaaaattaatccacttc
tGGTGTCTTTTGTTCATTTACTGTACTCTCGCATGGTAAGGGGCTATTCT
TTAGGGCTTATGACAACAATTACCTTTGTGATTTTCTATGGCCTATTACC
TAAAGAATTACCAGTTTCTTTTTGCTTGCTTTCGTAGCTCTATGGCTAAA
TTTATcgtattttatgaaatttgtcgttctttttgtctatttttattaaa
TGTTGGATTCTTTAGATTAACCTCCTCCACATATCATATCTATAACTCAA
TGCAACTGATTAAATAAATATTCTAGAGGCAGTGCTGCACTAATAATAGA
AGGAAACAAATTAATCTGAACTTTTGACTCTCAAACTGCTCAAAAATTTC
GAGGAAACTTTTAGTCTCTCCACACTAAATTGGAGGAAAAATAATCGAGC
AGACAACAAGTTTTCGCCATGTCAAATATACATTCCCAATGAGCTTGTCA
ACCGAATTAATTTATACTCATCATATTTGAAATCACAATTCAAAACAACT
AAATATCTAACGTAGATCATGAGAAAtttataaaatcatttttaaaaaag
tgaCTCAATTTTGAGTCAACAAAAATTGTAACTGAc

Coding sequence (CDS) from alignment at sc0000444:18443..21828+

>TCONS_00023144 ID=TCONS_00023144|Name=TCONS_00023144|organism=Clytia hemisphaerica|type=CDS|length=2160bp|location=Sequence derived from alignment at sc0000444:18443..21828+ (Clytia hemisphaerica)
ATGCAGATGACCTTTCAAAAAAGACTGTGTCACTGCcagttttcagagca
tgtcatCGTTGCCCCCAAGGAAAATTTCCAACAAAAAAAGCCAGAAAGAC
AGATGATAAAAACAATAGTTTGGTGGACATGTGGAGGTGCTTTCGCTGCC
CTATACGCAAATAAAGTACAAGGCTTACATTTCCTTTACAaaCCAAGAAG
AATTGTATTAGTGacacttcttggattggctgtTGGATACAAAGTTCATG
AATTTGAAAGAGATTTACCACAACTAATGGTAGAGGCTAGACGTGAACAT
GTTTTTGCTCCAAAATCTCGTGAAATGTTACTGACATACCAAGCTATGGT
GCGAAGAAATCAAGAGCAAGTGACTGAAGGAGatttcGAAGTTACagaag
aagaggaagaagaagacGAAGATGAAGAGTAGATGCAGATGACCTTTCAA
AAAAGACTGTGTCACTGCcagttttcagagcatgtcatCGTTGCCCCCAA
GGAAAATTTCCAACAAAAAAAGCCAGAAAGACAGATGATAAAAACAATAG
TTTGGTGGACATGTGGAGGTGCTTTCGCTGCCCTATACGCAAATAAAGTA
CAAGGCTTACATTTCCTTTACAaaCCAAGAAGAATTGTATTAGTGacact
tcttggattggctgtTGGATACAAAGTTCATGAATTTGAAAGAGATTTAC
CACAACTAATGGTAGAGGCTAGACGTGAACATGTTTTTGCTCCAAAATCT
CGTGAAATGTTACTGACATACCAAGCTATGGTGCGAAGAAATCAAGAGCA
AGTGACTGAAGGAGatttcGAAGTTACagaagaagaggaagaagaagacG
AAGATGAAGAGTAGATGCAGATGACCTTTCAAAAAAGACTGTGTCACTGC
cagttttcagagcatgtcatCGTTGCCCCCAAGGAAAATTTCCAACAAAA
AAAGCCAGAAAGACAGATGATAAAAACAATAGTTTGGTGGACATGTGGAG
GTGCTTTCGCTGCCCTATACGCAAATAAAGTACAAGGCTTACATTTCCTT
TACAaaCCAAGAAGAATTGTATTAGTGacacttcttggattggctgtTGG
ATACAAAGTTCATGAATTTGAAAGAGATTTACCACAACTAATGGTAGAGG
CTAGACGTGAACATGTTTTTGCTCCAAAATCTCGTGAAATGTTACTGACA
TACCAAGCTATGGTGCGAAGAAATCAAGAGCAAGTGACTGAAGGAGattt
cGAAGTTACagaagaagaggaagaagaagacGAAGATGAAGAGTAGATGC
AGATGACCTTTCAAAAAAGACTGTGTCACTGCcagttttcagagcatgtc
atCGTTGCCCCCAAGGAAAATTTCCAACAAAAAAAGCCAGAAAGACAGAT
GATAAAAACAATAGTTTGGTGGACATGTGGAGGTGCTTTCGCTGCCCTAT
ACGCAAATAAAGTACAAGGCTTACATTTCCTTTACAaaCCAAGAAGAATT
GTATTAGTGacacttcttggattggctgtTGGATACAAAGTTCATGAATT
TGAAAGAGATTTACCACAACTAATGGTAGAGGCTAGACGTGAACATGTTT
TTGCTCCAAAATCTCGTGAAATGTTACTGACATACCAAGCTATGGTGCGA
AGAAATCAAGAGCAAGTGACTGAAGGAGatttcGAAGTTACagaagaaga
ggaagaagaagacGAAGATGAAGAGTAGATGCAGATGACCTTTCAAAAAA
GACTGTGTCACTGCcagttttcagagcatgtcatCGTTGCCCCCAAGGAA
AATTTCCAACAAAAAAAGCCAGAAAGACAGATGATAAAAACAATAGTTTG
GTGGACATGTGGAGGTGCTTTCGCTGCCCTATACGCAAATAAAGTACAAG
GCTTACATTTCCTTTACAaaCCAAGAAGAATTGTATTAGTGacacttctt
ggattggctgtTGGATACAAAGTTCATGAATTTGAAAGAGATTTACCACA
ACTAATGGTAGAGGCTAGACGTGAACATGTTTTTGCTCCAAAATCTCGTG
AAATGTTACTGACATACCAAGCTATGGTGCGAAGAAATCAAGAGCAAGTG
ACTGAAGGAGatttcGAAGTTACagaagaagaggaagaagaagacGAAGA
TGAAGAGTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013012XLOC_013012Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00023144-exon-sc0000444-1491911889:18443..18624TCONS_00023144-exon-sc0000444-1491911889:18443..18624Clytia hemisphaericaexon
TCONS_00023144-exon-sc0000444-1510915933:18443..18624TCONS_00023144-exon-sc0000444-1510915933:18443..18624Clytia hemisphaericaexon
TCONS_00023144-exon-sc0000444-1575043694:18443..18624TCONS_00023144-exon-sc0000444-1575043694:18443..18624Clytia hemisphaericaexon
TCONS_00023144-exon-sc0000444-1491911889:18660..18679TCONS_00023144-exon-sc0000444-1491911889:18660..18679Clytia hemisphaericaexon
TCONS_00023144-exon-sc0000444-1510915933:18660..18679TCONS_00023144-exon-sc0000444-1510915933:18660..18679Clytia hemisphaericaexon
TCONS_00023144-exon-sc0000444-1575043694:18660..18679TCONS_00023144-exon-sc0000444-1575043694:18660..18679Clytia hemisphaericaexon
TCONS_00023144-exon-sc0000444-1491911889:19560..19647TCONS_00023144-exon-sc0000444-1491911889:19560..19647Clytia hemisphaericaexon
TCONS_00023144-exon-sc0000444-1510915933:19560..19647TCONS_00023144-exon-sc0000444-1510915933:19560..19647Clytia hemisphaericaexon
TCONS_00023144-exon-sc0000444-1575043694:19560..19647TCONS_00023144-exon-sc0000444-1575043694:19560..19647Clytia hemisphaericaexon
TCONS_00023144-exon-sc0000444-1491911889:19958..20149TCONS_00023144-exon-sc0000444-1491911889:19958..20149Clytia hemisphaericaexon
TCONS_00023144-exon-sc0000444-1510915933:19958..20149TCONS_00023144-exon-sc0000444-1510915933:19958..20149Clytia hemisphaericaexon
TCONS_00023144-exon-sc0000444-1575043694:19958..20149TCONS_00023144-exon-sc0000444-1575043694:19958..20149Clytia hemisphaericaexon
TCONS_00023144-exon-sc0000444-1491911889:21100..21828TCONS_00023144-exon-sc0000444-1491911889:21100..21828Clytia hemisphaericaexon
TCONS_00023144-exon-sc0000444-1510915933:21100..21828TCONS_00023144-exon-sc0000444-1510915933:21100..21828Clytia hemisphaericaexon
TCONS_00023144-exon-sc0000444-1575043694:21100..21828TCONS_00023144-exon-sc0000444-1575043694:21100..21828Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00023144-proteinTCONS_00023144-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000444supercontigsc0000444:18443..21828 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
22.9103	13.3284	21.7042	29.5627	20.7475	19.1971	13.5097	12.0734	3.71767	9.32296	2.64676	5.76676	0.719704	0.71346	2.72319	1.54887	13.8247	10.4554	0	1.2081	1.39363	3.4762	7.28082	7.34859	11.9813	9.41532	3.46056	3.37766	2.74802	2.19881
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00023144 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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