XLOC_012450 (gene) - C. hemisphaerica

Overview
NameXLOC_012450
Unique NameXLOC_012450
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000408:121788..131903+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_012450 ID=XLOC_012450|Name=XLOC_012450|organism=Clytia hemisphaerica|type=gene|length=10116bp|location=Sequence derived from alignment at sc0000408:121788..131903+ (Clytia hemisphaerica)
AAACACTTATTATGAAATCTGAGACCAAAACTGACATATAGTCTTACAAC ACATTTTTCAGTTGTAACTTCTTAGAAGGAGCTGAAAGTGACTTACAACA GCAAAAGTTTGTCCCACTCAGAAAATCAATCCCACTCAACTCTCATCATT GGACAGTTTTTGTTAATCTTATCATTTCTGTCTTCAAACTTTTAGACTGT CAACAAATATTACATCTGCTGCTGCTcttctaaaaatattaatttttcaa aatgggttTCTGGGTTAATGAATTTCCGAAATATTTTGTATTGGTGAGTT TTATTCATTTTGGTGTATCTTAATCCAATATATATGTTTTACataaattt tttaacaagatacCCTGCTTTTTAATCTTTATTTCTTTCTTAGAGTACTT TTTATTctagaagtatttcttttcaacgGCGTAGTACCAATGGAGCAATG TAGTCTAAGGTATGCAGTACCACAACcatacaacaaaatatatactCTAA CGGCTGACTTTTCTCAAAtctatattttttcaattttaatagTTTATTTG GCTTGGAATCAATGTTATGTTGTTTGCACTGGATTATATCAAATTTGATg atgaaaagaagtacttctacTTGAAATATATAGTCAAGGTTTGATTAAAA TGGTTATTTTTGTTCTGATTCAACATAAGAGATTATTTGTTTTGTTAGAT CTTTCAAGAAACGTATGTTTTAAAATCTGGTGCACAATATACTGTAATTT CATCAATACATTTTAGACTGGTTTGCCTGTTGCTCGTGGTTCAGCTGCAA TGTTGAATTTCAATTGCATGTTAATTCTATTTCCTGTCTGTAGGAATCTT CTATCTTTGATCAGAGATTTCCCAGTAAGTAACACATGTTTCTACTTACA GTTTTTTCAATTGCTTTCAGtgtttataaagtttttagaaatTATATTCA TTTGCCATAAAAAAGTCATGAAAGCTGAAATGTAAGTGTAAGAATTTCCT TTCCTTTTTAGaaatagaataaaaaacaattacTTTTCTTTGATATTTAG TTTTTGCCACATGCAGTTGGGCGTATCATGGACAAAAATATCACGTTTCA TCGAATGATTGCTTACATGATTTGTTTTGCAACAGGTAGGTCTTCCTTCG AGATATTTTTCTCGTTTAACTTGCATAATGAAGATCAGTTGTTAGTTGTT AGCTNGGGCGTATCATGGACAAAAATATCACGTTTCATCGAATGATTGCT TACATGATTTGTTTTGCAACAGGTAGGTCTTCCTTCAAGATATTTTTCTA GTTTAACTTGCATAATGAAGATCAGTTGTTAGTTGTTAGCTGGTGTTtgt ctcaaaatttcattcataCTCAATATAATTATTTGATATCAAGGAAGGAG TCTTCCTTATTAAGGGAAAGGGTAGACAAATCTCATCTATCCAATCTTTT ACATCTTACCTCACCATATTCACCTTTTTCTTGTTATATTAGCCTTACAT TTGGGTGCACATATCTTCAACTTTGAATATCTCATTGCAAGTAGAGATGC AACTACTGGCTTAACTAAATACttgaatgatttcaaagatggCGAAGATA AAGACCGATTAAATCCCATAGAATCTGCTGGATTGGTAGGTCAAAActct tattttcttatttttttgaccGAGTTGGTTTTAGTTCTTTGTTATATGAA TCTGCCTTCCTGTGCTCAAaccagaagaagaaaaattttaaagaattatt ATTGTTCTCTTATGATAATCACATTAAATTTATTGATGTACAAGTAAAAC AAAGTTTTCAACTTTCTCAACataaattttgttgtttacATGATGTATAC ATGTgtattatttcttattttagGATCCTGTTTTGGAGTTACTTCAAACT GTGGCTGGAATCACAGGAGTCATTATTACTATTTCTCTTATTACTATGGT AAGAGAACATCATATTGATGAAGAATTGATGAAAGTAGAGGGCTATGTGT AATTTTTTCTTGCACCTTGTAGCAGATGTGATGGGACCATAAAACACATA ACTTGGTTAAAGTTTACCGGTTAGGATTGATGTCAAAATTCTCTCAAGTC TGTGATAAAATTAATACAACGACTTCAGACATTTGACAGCAATCCTACAT GGTAATCTCTCTAACCCAGTTTTCTCAGGTTTTTATCATACTACTTCAAC CCTGAGATCTCTGGCATCTTGCAAAGGGTAAAAAGCAAAGTTGTTTCGAA TCTGATATAGAATAGTCTAGTACATAAACAAATTCTATATTACAAATTAT TCGGACTTCAAAACtcacaaaacaaattttaaagcaAGCTATAAAtcctt tcaatttcatttttaggtATCTTCTTCAACCGAGTTGATNCCGAGTTGGT TTTAGTTCTTTGTTATATGAATCTGCCTTCCTGTGCTCAAaccagaagaa gaaaaattttaaagaattattATTGTTCTCTTATGATAATCACATTAAAT TTATTGATGTACAAGTAAAACAAAGTTTTCAACTTTCTCAACataaattt tgttgtttacATGATGTATACATGTgtattatttcttattttagGATCCT GTTTTGGAGTTACTTCAAACTGTGGCTGGAATCACAGGAGTCATTATTAC TATTTCTCTTATTACTATGGTAAGAGAACATCATATTGATGAAGAATTGA TGAAAGTAGAGGGCTATGTGTAATTTTTTCTTGCACCTTGTAGCAGATGT GATGGGACCATAAAACACATAACTTGGTTAAAGTTTACCGGTTAGGATTG ATGTCAAAATTCTCTCAAGTCTGTGATAAAATTAATACAACGACTTCAGA CATTTGACAGCAATCCTACATGGTAATCTCTCTAACCCAGTTTTCTCAGG TTTTTATCATACTACTTCAACCCTGAGATCTCTGGCATCTTGCAAAGGGT AAAAAGCAAAGTTGTTTCGAATCTGATATAGAATAGTCTAGTACATAAAC AAATTCTATATTACAAATTATTCGGACTTCAAAACtcacaaaacaaattt taaagcaAGCTATAAAtcctttcaatttcatttttaggtATCTTCTTCAA CCGAGTTGATCAGGTATATATTAGGAATTTCCATTTTCGAGTGACTTAAA AGTTTCTTTGAGAATTTATTGTGCAGTTTCTTGAGTAAAAAATTCCACCT CATCGCCTCCCTCCAGGATGTCTGACAGCATGTGAAAACTAACCATTTAT GATGGATAATTCTCTTATGATATTTAtctgacatttttttattttttaga cgttcatattttgaagtattttggtTCACCCATCATTTGTTTGTTGTCTT TTTCATCGGAATGCTTTTCCATGGCTTCGGGTGAGTTGATATTCTCAGAA GGAGTGATTTCAGACTAGTCATTCATATATAAAACACTGCATAAAGCTTC TCCTTCCCTGGCCGAGGCAAAACGTGCAGTGAGTGAGTCATTGCAGTGTC AAAATGCTTCAACTAACCCCACTACCTTTTTaaagaaacatttttatgaG AACACCAGGTCAAACTTGATTAAACCTACGAATAATCAGAATCTCATTAC GACACAACAAAAAATTGATATCATTATGAACAAATTGCACCCTTTTAGTG AACTTCTACGATCCCAAAACAACACGTCTGAACACAATCCTGAATATTGT TCCCAAGATGACCGATACAATACTGACTCAGAATGTCAGAAACCTCCACG ATTCAGTGCTGCAGGACCACAGGTGAGagattttgaatcttttttttgac actttttcaatacctttttgttttcttggctGGGATGATCTTATCTTGAT CTTAGCATGGGTCGCTATAGTCCTACCAATACAGGACCAAAATTATGACA TTTCTGGGTTAAAATAGTAGGCGTATTCAGAAATTCTCTATCCTGTGATA TTCTAAGTATGAGGGGTCATTAATTCCACTTAACCGACCTGAAGGTAGGT ATCTCTATCCAAGATGGCAACTTATCATCCAGTAGAATATGTAACAGATT TCAGGGAATAGAATACTagatatgaaatatttttcaatcgttaTAGTCTT GGAAATGGATTATTGCTCCGATGGGGTTGTACTTGATTGAACGTTGCATT CGATTCTACAGATCTTTCCAAACTTGCGAGGTTAAAAAGGTAAATACTCT TTATTGGTGAAATTGAGTTTATCAAACCTTATACATATTTTCTTTTATTG CTACTGTATATTGCCTTTATTTACCATGCAACTCATTGCAATAAATCCAC CAAGTGAATGTTAAAAAGAAATTGTCATGTTGTACATTTGTTAAATTATA TCATTCTTTAGGTTGTTAAGCATCCATCGAAAGTCATTGAAGTTCAAATG AGGAAGCCTGGATTCAGAGCACAAGCTGGCCAGGTAGGTCGCTATTCAGA ATATGCACCACTGCAGTGTCTTAAGAGATTTTTACAATGTTTTTACCCAA TACGTCATTTTAAACCAATCATATTTCGTAAAAGTGACGTGTTgcgtgga aaattttgaaatttttaggaagacattgcagtggtgcatatcctGAACTG TTGCACATGGTCTGTGTTTGCTGCAGTCACTGTTGAAAAGTCTGCATGGA AAAGTGTCTTATTTGTTATTATGCTCGTCCTCCAACGAAAAAGTTTCTTC TAGAAATTTAGGTTTATATAGGAAGTatgaccatgttcgcacgtgacggt tctGTTTCGCTTCAAAACGATatttctattggttacatttcagtgttacg tcacttctaaccaatagaatggcttcatttcgtttcggagcgaaacagaA CCGTCATGTGCGAACATGAtctatatctatagaggtcttcGAACCAGACT ACTTTGCGATGCACTCGCAAGGAAAAGGAGTGCAtctgtttgtttgaaaa tgtcaaaataggACAAACTTTGGTAATGAACTTGAAATCGTTGTAGATAT CGGGACTTTTACAGGGACACACATTATCATCTTTCAAGGCTGATTTAGTA TAAGGaatttatataaaatatttgaGTGATTTTGATATGAAGGAACATGA CATAAACGCTTGTTGCAATAAATGCAAAATTCTAATTGAGTTTTTCTCTG CATAAATAGAATGAATGTCACCTCACTTTATAACTGTTTATTTTCTATAG TAAGTGAGTCACACTTTGACAGTGAGGCATTCTTGCATCCTACTGCGAAG TCTAGTATAATTTTAATAGATGCTTATCACACTGTGGTTAGAAATCGTTC ACATTTTTCTAATCTTCTGCCACAGGCACAGAGTGTAAGCACAATTAATC TTTAAAGACTATATATGTTACATACGGTGCATACTGTtatgacacattct ctttataaGCAGCCCCCAAATTTTGGGCTAAGGctgaagttatttttcat tccTTAAATTCCATTCCTTCTCCTGATATTACACTTGGatcaagggctat cgtttgccttcacgaaaaagtaaaaaaaaaattggctgatTTAAGGGGTC GAGATGGGATCCTTGTGTAatcatgatttttgtttttcttatattgCAGT ACATCTTTTTACATTGTCCAAGTATCTCACCTTTGGAATGGCATCCGTTT ACTCTGACATCGGTGAGtattaaatatttaaaagatAACATTTTAATCTA AACTCTTCGAATAATAACGTCATGGCCTAGCAGGAGgttaattgtatttt tgtaNCCTAAACTCTTCGAATAGTAACGTCATGGCCTAGCAGGAGgttaa ttgtatttttgtaagTTACGTAAATTTGCTTATATACTTTACActatttc atcaaaaattacaaaacttcATACATTATAACTAATATGGGGAACTGAAt ttgttttccatttttatGTTTCACCATGTTTTCACCATTTAGATCCAACT GGAACCTTTAAAAAGGCCTGGGAGAATATTCTGTTTCTAGAATGTCGttt tcttaaatattttttttcaaattcaagccaAACGTCTGTTTAAGATGATT TTCTCAGGGGATTCCTCAAATTGTCCTTGAGAGAATTGCAATTGTTTGAA AATCGTATTATCGTTAAAGGGGAATTGTTTTGGTTATAATTCTTTAGAGG TTATTGTTTgggaaaattaacaaaaacaaataaaaagtgTTATAATATCG TTCCTGTTCGTTATAGTGTCCAGAAGAAGATTTCTTTTCGGTCCATATTC GTATTGTTGGGGACTGGACTCGTAAGTCATTATCGCCTGCTATGTTCTAT TTTTATCATCCATGGCTTGAAAAATAAAGTTTGCGTCAAAATGACAATGA CTTAGCTCATTATTTAGTTTGATTTTCTCACGAGAAGTTGTAAGTCTAAT GGTTAATGTTACAAAAGGATGTTTTAGACCAACTTCTATTTATCCTTTTT AAAACTGTTTCCTAATACCCAACATATAAACATTTATCATTCGATTTCCA AACAGAGGCTTTGTCGAATTCTTGTGGTAATGACACTGATAACGTTGATG TCTCCAAAATTCCAAGGTAAACGAAACAACTTCTCCTTGATGGTAACTCT GCTCCCTTACTGTAATCACTACCTATATACTTTATTTATTCGAAATTAGA AATGTCGTCTATCTGTTAGTTGGATTATAATTAGATGTTAGATCTGGAAA AGATAAATGATTATGCTTTGTAGTTTTTGacgcttttttttcttttttac tttttttcagatTGGCATGTGATGGACCATTCGGAACTGCTAGTACTGTA AGTGTTACATTAATTGTGTAGTAGTGTAATGGGTATCGATCTTGACTGCC GTCCAGGAGGGTGGATTTCGATCGACACTTGGTGCTGTAATTCACCTGGA AAAGAATGTACCTTTTCccaggtcaacccataccatgagAGGGAAATCGG GTAGACAAAAACTCAAGAAGCCTATCGGTGACTGTGCTAGACATCGATTC CGTAATACATTCTGGATGGCCACTCTTCTTGCTCCCTGGTGGTTCACGCC CAAACTGTGGGCCAATATCGCTAAAGCCATAGAGCCTAGAATGCTCTGTT CACAACTGGGCATCTATAATTACAAAAAAGGTCCACGAACTAAGAGCAAC AGAAGGCCCAAAATCAACAAATCATAGATATGAATACTCAAAgctataaa tatataaatatgtTTAGAAAATTGATTTCACCGATTTTTCTTTGTAGGAC GTCTTCCGCCATGAAAATGTCATTTGTTGCGGAGCTGGTATTGGAGTCAC GCCCTTCGCCTCCATTCTCAAATCCATCTGGTAAGATATTCAAAATTCTA AACTTGTTTCTAGTACAAATTGATTCGATGTTAAGAAGCAAAGTGATTGA TTATGAGGCCTCATTCCAAACTTCCTTCTTTAGTGTTTCGTTCCTTTAGA TAGTGGGTCAAGCTGCCCATAAAACCTCGCAATATAGTTGATCATCTAAA AtccctttattatttttttcactgaGTTGATATTGGAAAATAACAACTCT ACAAGCTTGTTTAAGACTCTCTCTTCTGTTAAAGTTCTTGCTCTTCTTTA AAGGTACCGTCAACAGAGAAAGGATACAACCCTGAGAATCAAGAAAGTTT ATTTCTATTGGATTTGTCCAGACNTACCGTCAACAGAGAAAGGATACCAC CCTGAGAATCAAGAAAGTTTATTTCTATTGGATTTGTCCAGACACTAATG CTTTTGAATGGTTCTCTGATCTCCTCCAATCTCTTGAGCAACAGGTTTGT ATTCTAAACATATTTTCCATTCACGATAGCTATTAATAAAACGGCTCTGT TCTTTAATAAAAAGTTGAGGATAAAAAGAACTGAGTAGTTGTGATACTCA AACAAGACTTATTTCGGTTTCCTTCGCCTAGTATAATTAGATGAACTCTC CATTCCGACTCAACCTACAAGCCACCGCGCCGATTTAAAAAAACCTTGAA GAGAATTGTGTAGTCATTTCTGATTTTTGTCGAAAGCAACATTTACTTCA TTTATGGTTTGGAATTTTCGGAATAAGgaataattcaattttattttttg tttattagaTGATGGAGAAAGGCGAGATGGGATTTTTGGAATATAATATT TATTTGACCAGAGGTTGGGGAAAGGGTGATGTGAGTATTTTTTTGATCCT TTTGAAGAGCGTCCGTATCAATCTGTCTTGCGTCATTGTATCTCGATCTC TTCCACAACTCGAACGATTATTTGAAACAGAAACTGTGCAATATATATAT TTCATCTTTCTTTGCAGGCACGCAACATTATTCTGCATGAAAATGATGAA GAGGACGTCATCACAGGtctcaaacaaaaaacaaatttcgGACGTCCGAA CTGGGATGAGATTTTCAGAACTACTGCTATTAAACATAAAGGGTAAGATA TTGCATCAAGATCAGGCCCTTAGAACATTCTTTAGACTTTTGCTAAACAT ATTTCTGACANTATCAAGATCAGGCCCTTAGAATAGTCTTTAGACTTTTG CTAAACATATTTCTGACACCTGAGTTTACTGCAGCATGGTGTAGTAGGAA TTGTGTTTTGGGCCTTTCCAGAAAAGATTGTCTTGGGTTTTTGAGGACCT CAATTTAtggaaaatatttagatttGTGATTTGACAGGTATATAGGAGTT TTTATTCTTTCTTCTTACGCTTGCTTCATTCTCGAGAATGGtttcaattt taaaatgttCAATATTCCGTCATATTGATCGATGAACTTTTTGACCTCCT CGACCAGGATCATTCATGAGCTTTGGCGAATGATTCTCTCGACCTCCACA AAAACGACCTTATCTTCGACTAATCCCTCTGAATATTCAGACTTTTTATC ATGTGTTTACTCCCTGGATGTCTGCAATATCATCAAGACCCCCAtacttt ttttggggggggagCCTAATTGTTCTTCCAAATATGAAATAGGCTTAATA TTTGGATAATCTTTTCGATAAtacaagaaaaattaaactGGGTTTGATTA ATCTttggaaaaagtgtttaaaattAAGACTGAACTTTTGTTCATCTCTG GTTTCTAGATCTGATGTTGGTGTGTTCTTTTGTGGGCCAGCCATCCTTTC GCACACTTTACACGAGATGTCCAATAAGCATAGCAACGAAACGACCAAAT TCTATTAtaacaaggaaaatttctaagtGGGTTTAAATTGGATTGGATCA TATATTATTGGTTTATAATCAAGGATGGTTTTGTTGATATagaaactttt tccaaaatattttttggtctTCGCGAGACTGAATCTCATACACTTGGAGA tgaaatattatcaaataatagCAAAAGCTTTTGAAATGGTTGTAAtcgtt ttaatttttgattatcACATTGaaggaattttttgaatttcaatttcttc aattcaaaatttggtaaaaaacaAGGATTATGATTTTATCTTCAAAATGT TGAATTGTGAATCACCTAATTTTGAAAACCTTTTGCAAAGTAAAGAACAG TGCCAATAGAATAAAAGCCAACAGTAGAATAGATGTTTTACAGAAATTGT CCACTGCTTTTTACGTAAACACCATACTGTCCAAGACCAGGGCCTAAAAA CTTTGGTGACAGAGatttaccaaaaaatattttttgtataattataagaa atattaaatatttattttttagcttATTATTTTTGTTCCTCACAATaaag caaaaacattttctgtttatATCAGCAGTTCAACATTCGAAACTGAATTT CAAGAGTATGGGTGGGGCTTAGATAACGCCCCTAGATATATGAGACGCTT TTTTTCTATTCGCTTTCAGTTTGAAAGTCGATTCAACTTGATCTTCACAg caaaatttcacaaattttagCACATGTTTGATGAATTTTTCATCGTTTTT TTCTAGATTATGTAGCTTTTAATATgatgtaaatataaaaataatgtatt ttttttaccaaggataattattctttttgtatttttctggATAATGATTT ATAtggtaattttttgttttgttttttttcggtcCATGTGTTTTTGCATT GAATATTTTATACAAA
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00022194TCONS_00022194Clytia hemisphaericatranscript
TCONS_00022195TCONS_00022195Clytia hemisphaericatranscript
TCONS_00022196TCONS_00022196Clytia hemisphaericatranscript
TCONS_00022197TCONS_00022197Clytia hemisphaericatranscript
TCONS_00022198TCONS_00022198Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
Conserved uncharacterized proteinTCONS_00022194-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000408supercontigsc0000408:121788..131903 +
Orthologs
The following orthologs are found for this feature:
Ortholog NameDescriptionOrganism
CYBBcytochrome b-245 heavy chain Homo Sapiens
NOX1NADPH oxidase 1 isoform 1 Homo Sapiens
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
41.74 42.1 176.58 188.51 11.9 8.99 25.54 23.62 46.15 55.5 95.32 44.48 105.17 94.4 37.57 47.13 83.71 100.18 104.69 97.22 140.32 145.69 60.52 82.02 98.76 90.05 126.65 108.83 114.14 80.06