TCONS_00022196 (transcript) - C. hemisphaerica

Overview
NameTCONS_00022196
Unique NameTCONS_00022196
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length667

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00022196 ID=TCONS_00022196|Name=TCONS_00022196|organism=Clytia hemisphaerica|type=transcript|length=667bp
TTTTTGTTAATCTTATCATTTCTGTCTTCAAACTTTTAGACTGTCAACAA
ATATTACATCTGCTGCTGCTcttctaaaaatattaatttttcaaaatggg
ttTCTGGGTTAATGAATTTCCGAAATATTTTGTATTGTTTATTTGGCTTG
GAATCAATGTTATGTTGTTTGCACTGGATTATATCAAATTTGATgatgaa
aagaagtacttctacTTGAAATATATAGTCAAGACTGGTTTGCCTGTTGC
TCGTGGTTCAGCTGCAATGTTGAATTTCAATTGCATGTTAATTCTATTTC
CTGTCTGTAGGAATCTTCTATCTTTGATCAGAGATTTCCCATTTTTGCCA
CATGCAGTTGGGCGTATCATGGACAAAAATATCACGTTTCATCGAATGAT
TGCTTACATGATTTGTTTTGCAACAGCCTTACATTTGGGTGCACATATCT
TCAACTTTGAATATCTCATTGCAAGTAGAGATGCAACTACTGGCTTAACT
AAATACttgaatgatttcaaagatggCGAAGATAAAGACCGATTAAATCC
CATAGAATCTGCTGGATTGGATCCTGTTTTGGAGTTACTTCAAACTGTGG
CTGGAATCACAGGAGTCATTATTACTATTTCTCTTATTACTATGgtATCT
TCTTCAACCGAGTTGAT
Run BLAST on NCBI

transcript from alignment at sc0000408:121944..124176+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00022196 ID=TCONS_00022196|Name=TCONS_00022196|organism=Clytia hemisphaerica|type=transcript|length=2233bp|location=Sequence derived from alignment at sc0000408:121944..124176+ (Clytia hemisphaerica)
TTTTTGTTAATCTTATCATTTCTGTCTTCAAACTTTTAGACTGTCAACAA
ATATTACATCTGCTGCTGCTcttctaaaaatattaatttttcaaaatggg
ttTCTGGGTTAATGAATTTCCGAAATATTTTGTATTGGTGAGTTTTATTC
ATTTTGGTGTATCTTAATCCAATATATATGTTTTACataaattttttaac
aagatacCCTGCTTTTTAATCTTTATTTCTTTCTTAGAGTACTTTTTATT
ctagaagtatttcttttcaacgGCGTAGTACCAATGGAGCAATGTAGTCT
AAGGTATGCAGTACCACAACcatacaacaaaatatatactCTAACGGCTG
ACTTTTCTCAAAtctatattttttcaattttaatagTTTATTTGGCTTGG
AATCAATGTTATGTTGTTTGCACTGGATTATATCAAATTTGATgatgaaa
agaagtacttctacTTGAAATATATAGTCAAGGTTTGATTAAAATGGTTA
TTTTTGTTCTGATTCAACATAAGAGATTATTTGTTTTGTTAGATCTTTCA
AGAAACGTATGTTTTAAAATCTGGTGCACAATATACTGTAATTTCATCAA
TACATTTTAGACTGGTTTGCCTGTTGCTCGTGGTTCAGCTGCAATGTTGA
ATTTCAATTGCATGTTAATTCTATTTCCTGTCTGTAGGAATCTTCTATCT
TTGATCAGAGATTTCCCAGTAAGTAACACATGTTTCTACTTACAGTTTTT
TCAATTGCTTTCAGtgtttataaagtttttagaaatTATATTCATTTGCC
ATAAAAAAGTCATGAAAGCTGAAATGTAAGTGTAAGAATTTCCTTTCCTT
TTTAGaaatagaataaaaaacaattacTTTTCTTTGATATTTAGTTTTTG
CCACATGCAGTTGGGCGTATCATGGACAAAAATATCACGTTTCATCGAAT
GATTGCTTACATGATTTGTTTTGCAACAGGTAGGTCTTCCTTCGAGATAT
TTTTCTCGTTTAACTTGCATAATGAAGATCAGTTGTTAGTTGTTAGCTNG
GGCGTATCATGGACAAAAATATCACGTTTCATCGAATGATTGCTTACATG
ATTTGTTTTGCAACAGGTAGGTCTTCCTTCAAGATATTTTTCTAGTTTAA
CTTGCATAATGAAGATCAGTTGTTAGTTGTTAGCTGGTGTTtgtctcaaa
atttcattcataCTCAATATAATTATTTGATATCAAGGAAGGAGTCTTCC
TTATTAAGGGAAAGGGTAGACAAATCTCATCTATCCAATCTTTTACATCT
TACCTCACCATATTCACCTTTTTCTTGTTATATTAGCCTTACATTTGGGT
GCACATATCTTCAACTTTGAATATCTCATTGCAAGTAGAGATGCAACTAC
TGGCTTAACTAAATACttgaatgatttcaaagatggCGAAGATAAAGACC
GATTAAATCCCATAGAATCTGCTGGATTGGTAGGTCAAAActcttatttt
cttatttttttgaccGAGTTGGTTTTAGTTCTTTGTTATATGAATCTGCC
TTCCTGTGCTCAAaccagaagaagaaaaattttaaagaattattATTGTT
CTCTTATGATAATCACATTAAATTTATTGATGTACAAGTAAAACAAAGTT
TTCAACTTTCTCAACataaattttgttgtttacATGATGTATACATGTgt
attatttcttattttagGATCCTGTTTTGGAGTTACTTCAAACTGTGGCT
GGAATCACAGGAGTCATTATTACTATTTCTCTTATTACTATGGTAAGAGA
ACATCATATTGATGAAGAATTGATGAAAGTAGAGGGCTATGTGTAATTTT
TTCTTGCACCTTGTAGCAGATGTGATGGGACCATAAAACACATAACTTGG
TTAAAGTTTACCGGTTAGGATTGATGTCAAAATTCTCTCAAGTCTGTGAT
AAAATTAATACAACGACTTCAGACATTTGACAGCAATCCTACATGGTAAT
CTCTCTAACCCAGTTTTCTCAGGTTTTTATCATACTACTTCAACCCTGAG
ATCTCTGGCATCTTGCAAAGGGTAAAAAGCAAAGTTGTTTCGAATCTGAT
ATAGAATAGTCTAGTACATAAACAAATTCTATATTACAAATTATTCGGAC
TTCAAAACtcacaaaacaaattttaaagcaAGCTATAAAtcctttcaatt
tcatttttaggtATCTTCTTCAACCGAGTTGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012450XLOC_012450Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022196-exon-sc0000408-1491911889:121944..122080TCONS_00022196-exon-sc0000408-1491911889:121944..122080Clytia hemisphaericaexon
TCONS_00022196-exon-sc0000408-1510915933:121944..122080TCONS_00022196-exon-sc0000408-1510915933:121944..122080Clytia hemisphaericaexon
TCONS_00022196-exon-sc0000408-1575043694:121944..122080TCONS_00022196-exon-sc0000408-1575043694:121944..122080Clytia hemisphaericaexon
TCONS_00022196-exon-sc0000408-1491911889:122330..122425TCONS_00022196-exon-sc0000408-1491911889:122330..122425Clytia hemisphaericaexon
TCONS_00022196-exon-sc0000408-1510915933:122330..122425TCONS_00022196-exon-sc0000408-1510915933:122330..122425Clytia hemisphaericaexon
TCONS_00022196-exon-sc0000408-1575043694:122330..122425TCONS_00022196-exon-sc0000408-1575043694:122330..122425Clytia hemisphaericaexon
TCONS_00022196-exon-sc0000408-1491911889:122554..122661TCONS_00022196-exon-sc0000408-1491911889:122554..122661Clytia hemisphaericaexon
TCONS_00022196-exon-sc0000408-1510915933:122554..122661TCONS_00022196-exon-sc0000408-1510915933:122554..122661Clytia hemisphaericaexon
TCONS_00022196-exon-sc0000408-1575043694:122554..122661TCONS_00022196-exon-sc0000408-1575043694:122554..122661Clytia hemisphaericaexon
TCONS_00022196-exon-sc0000408-1491911889:122838..122922TCONS_00022196-exon-sc0000408-1491911889:122838..122922Clytia hemisphaericaexon
TCONS_00022196-exon-sc0000408-1510915933:122838..122922TCONS_00022196-exon-sc0000408-1510915933:122838..122922Clytia hemisphaericaexon
TCONS_00022196-exon-sc0000408-1575043694:122838..122922TCONS_00022196-exon-sc0000408-1575043694:122838..122922Clytia hemisphaericaexon
TCONS_00022196-exon-sc0000408-1491911889:123280..123422TCONS_00022196-exon-sc0000408-1491911889:123280..123422Clytia hemisphaericaexon
TCONS_00022196-exon-sc0000408-1510915933:123280..123422TCONS_00022196-exon-sc0000408-1510915933:123280..123422Clytia hemisphaericaexon
TCONS_00022196-exon-sc0000408-1575043694:123280..123422TCONS_00022196-exon-sc0000408-1575043694:123280..123422Clytia hemisphaericaexon
TCONS_00022196-exon-sc0000408-1491911889:123661..123735TCONS_00022196-exon-sc0000408-1491911889:123661..123735Clytia hemisphaericaexon
TCONS_00022196-exon-sc0000408-1510915933:123661..123735TCONS_00022196-exon-sc0000408-1510915933:123661..123735Clytia hemisphaericaexon
TCONS_00022196-exon-sc0000408-1575043694:123661..123735TCONS_00022196-exon-sc0000408-1575043694:123661..123735Clytia hemisphaericaexon
TCONS_00022196-exon-sc0000408-1491911889:124154..124176TCONS_00022196-exon-sc0000408-1491911889:124154..124176Clytia hemisphaericaexon
TCONS_00022196-exon-sc0000408-1510915933:124154..124176TCONS_00022196-exon-sc0000408-1510915933:124154..124176Clytia hemisphaericaexon
TCONS_00022196-exon-sc0000408-1575043694:124154..124176TCONS_00022196-exon-sc0000408-1575043694:124154..124176Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000408supercontigsc0000408:121944..124176 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
19.6913	19.7972	83.6469	89.5022	4.38222	2.9246	12.4186	9.50868	20.2331	24.7501	46.62	20.2939	46.378	38.9803	16.6404	20.9114	37.2194	43.288	45.8913	43.3897	68.2606	69.648	29.9766	37.0606	42.5237	38.2827	58.1343	47.5954	52.1118	36.9909
Blast
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BLAST of TCONS_00022196 vs. Swiss-Prot (Human)
Match: NOX1 (NADPH oxidase 1 OS=Homo sapiens GN=NOX1 PE=1 SV=2)

HSP 1 Score: 132.494 bits (332), Expect = 1.585e-35
Identity = 84/194 (43.30%), Postives = 118/194 (60.82%), Query Frame = 3 
Query:   96 MGFWV-NEFPKYFVLFIWLGINVMLFALDYIKFDDEKKYFYLKYIVKTGLPVARGSAAMLNFNCMLILFPVCRNLLSLIR-DFPFLPHAVGRIMDKNITFHRMIAYMICFATALHLGAHIFNFEYLIASRDATTGLTKYLNDFKDGEDK---DRLNPIESAGLDPVLELLQXXXXXXXXXXXXSLITMVSSSTE 662
            MG WV N +     L +WLG+NV LF   ++K++   KY+Y + I+ + L  AR SA  LNFN  LIL PVCRNLLS +R    F    + + +D N+TFH+++AYMIC  TA+H+ AH+FNF+    SR AT G    +      ++K     LNPI+S           ++AG+TGVI+TI+LI MV+S+TE
Sbjct:    1 MGNWVVNHWFSVLFLVVWLGLNVFLFVDAFLKYEKADKYYYTRKILGSTLACARASALCLNFNSTLILLPVCRNLLSFLRGTCSFCSRTLRKQLDHNLTFHKLVAYMICLHTAIHIIAHLFNFDCYSRSRQATDGSLASILSSLSHDEKKGGSWLNPIQSRNTTVEYVTFTSIAGLTGVIMTIALILMVTSATE 194
The following BLAST results are available for this feature:
BLAST of TCONS_00022196 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NOX11.585e-3543.30NADPH oxidase 1 OS=Homo sapiens GN=NOX1 PE=1 SV=2[more]
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