TCONS_00022195 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00022195
Unique Name	TCONS_00022195
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	2821

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000408:121788..131903+

transcript sequence

>TCONS_00022195 ID=TCONS_00022195|Name=TCONS_00022195|organism=Clytia hemisphaerica|type=transcript|length=2821bp
AAACACTTATTATGAAATCTGAGACCAAAACTGACATATAGTCTTACAAC
ACATTTTTCAGTTGTAACTTCTTAGAAGGAGCTGAAAGTGACTTACAACA
GCAAAAGTTTGTCCCACTCAGAAAATCAATCCCACTCAACTCTCATCATT
GGACAGTTTTTGTTAATCTTATCATTTCTGTCTTCAAACTTTTAGACTGT
CAACAAATATTACATCTGCTGCTGCTcttctaaaaatattaatttttcaa
aatgggttTCTGGGTTAATGAATTTCCGAAATATTTTGTATTGTTTATTT
GGCTTGGAATCAATGTTATGTTGTTTGCACTGGATTATATCAAATTTGAT
gatgaaaagaagtacttctacTTGAAATATATAGTCAAGACTGGTTTGCC
TGTTGCTCGTGGTTCAGCTGCAATGTTGAATTTCAATTGCATGTTAATTC
TATTTCCTGTCTGTAGGAATCTTCTATCTTTGATCAGAGATTTCCCATTT
TTGCCACATGCAGTTGGGCGTATCATGGACAAAAATATCACGTTTCATCG
AATGATTGCTTACATGATTTGTTTTGCAACAGCCTTACATTTGGGTGCAC
ATATCTTCAACTTTGAATATCTCATTGCAAGTAGAGATGCAACTACTGGC
TTAACTAAATACttgaatgatttcaaagatggCGAAGATAAAGACCGATT
AAATCCCATAGAATCTGCTGGATTGGATCCTGTTTTGGAGTTACTTCAAA
CTGTGGCTGGAATCACAGGAGTCATTATTACTATTTCTCTTATTACTATG
gtATCTTCTTCAACCGAGTTGATCAGacgttcatattttgaagtattttg
gtTCACCCATCATTTGTTTGTTGTCTTTTTCATCGGAATGCTTTTCCATG
GCTTCGGTGAACTTCTACGATCCCAAAACAACACGTCTGAACACAATCCT
GAATATTGTTCCCAAGATGACCGATACAATACTGACTCAGAATGTCAGAA
ACCTCCACGATTCAGTGCTGCAGGACCACAGTCTTGGAAATGGATTATTG
CTCCGATGGGGTTGTACTTGATTGAACGTTGCATTCGATTCTACAGATCT
TTCCAAACTTGCGAGGTTAAAAAGGTTGTTAAGCATCCATCGAAAGTCAT
TGAAGTTCAAATGAGGAAGCCTGGATTCAGAGCACAAGCTGGCCAGTACA
TCTTTTTACATTGTCCAAGTATCTCACCTTTGGAATGGCATCCGTTTACT
CTGACATCGTGTCCAGAAGAAGATTTCTTTTCGGTCCATATTCGTATTGT
TGGGGACTGGACTCAGGCTTTGTCGAATTCTTGTGGTAATGACACTGATA
ACGTTGATGTCTCCAAAATTCCAAGatTGGCATGTGATGGACCATTCGGA
ACTGCTAGTACTGACGTCTTCCGCCATGAAAATGTCATTTGTTGCGGAGC
TGGTATTGGAGTCACGCCCTTCGCCTCCATTCTCAAATCCATCTGGTACC
GTCAACAGAGAAAGGATACAACCCTGAGAATCAAGAAAGTTTATTTCTAT
TGGATTTGTCCAGACACTAATGCTTTTGAATGGTTCTCTGATCTCCTCCA
ATCTCTTGAGCAACAGaTGATGGAGAAAGGCGAGATGGGATTTTTGGAAT
ATAATATTTATTTGACCAGAGGTTGGGGAAAGGGTGATGCACGCAACATT
ATTCTGCATGAAAATGATGAAGAGGACGTCATCACAGGtctcaaacaaaa
aacaaatttcgGACGTCCGAACTGGGATGAGATTTTCAGAACTACTGCTA
TTAAACATAAAGGATCTGATGTTGGTGTGTTCTTTTGTGGGCCAGCCATC
CTTTCGCACACTTTACACGAGATGTCCAATAAGCATAGCAACGAAACGAC
CAAATTCTATTAtaacaaggaaaatttctaagtGGGTTTAAATTGGATTG
GATCATATATTATTGGTTTATAATCAAGGATGGTTTTGTTGATATagaaa
ctttttccaaaatattttttggtctTCGCGAGACTGAATCTCATACACTT
GGAGAtgaaatattatcaaataatagCAAAAGCTTTTGAAATGGTTGTAA
tcgttttaatttttgattatcACATTGaaggaattttttgaatttcaatt
tcttcaattcaaaatttggtaaaaaacaAGGATTATGATTTTATCTTCAA
AATGTTGAATTGTGAATCACCTAATTTTGAAAACCTTTTGCAAAGTAAAG
AACAGTGCCAATAGAATAAAAGCCAACAGTAGAATAGATGTTTTACAGAA
ATTGTCCACTGCTTTTTACGTAAACACCATACTGTCCAAGACCAGGGCCT
AAAAACTTTGGTGACAGAGatttaccaaaaaatattttttgtataattat
aagaaatattaaatatttattttttagcttATTATTTTTGTTCCTCACAA
TaaagcaaaaacattttctgtttatATCAGCAGTTCAACATTCGAAACTG
AATTTCAAGAGTATGGGTGGGGCTTAGATAACGCCCCTAGATATATGAGA
CGCTTTTTTTCTATTCGCTTTCAGTTTGAAAGTCGATTCAACTTGATCTT
CACAgcaaaatttcacaaattttagCACATGTTTGATGAATTTTTCATCG
TTTTTTTCTAGATTATGTAGCTTTTAATATgatgtaaatataaaaataat
gtattttttttaccaaggataattattctttttgtatttttctggATAAT
GATTTATAtggtaattttttgttttgttttttttcggtcCATGTGTTTTT
GCATTGAATATTTTATACAAA

Run BLAST on NCBI

transcript from alignment at sc0000408:121788..131903+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00022195 ID=TCONS_00022195|Name=TCONS_00022195|organism=Clytia hemisphaerica|type=transcript|length=10116bp|location=Sequence derived from alignment at sc0000408:121788..131903+ (Clytia hemisphaerica)
AAACACTTATTATGAAATCTGAGACCAAAACTGACATATAGTCTTACAAC
ACATTTTTCAGTTGTAACTTCTTAGAAGGAGCTGAAAGTGACTTACAACA
GCAAAAGTTTGTCCCACTCAGAAAATCAATCCCACTCAACTCTCATCATT
GGACAGTTTTTGTTAATCTTATCATTTCTGTCTTCAAACTTTTAGACTGT
CAACAAATATTACATCTGCTGCTGCTcttctaaaaatattaatttttcaa
aatgggttTCTGGGTTAATGAATTTCCGAAATATTTTGTATTGGTGAGTT
TTATTCATTTTGGTGTATCTTAATCCAATATATATGTTTTACataaattt
tttaacaagatacCCTGCTTTTTAATCTTTATTTCTTTCTTAGAGTACTT
TTTATTctagaagtatttcttttcaacgGCGTAGTACCAATGGAGCAATG
TAGTCTAAGGTATGCAGTACCACAACcatacaacaaaatatatactCTAA
CGGCTGACTTTTCTCAAAtctatattttttcaattttaatagTTTATTTG
GCTTGGAATCAATGTTATGTTGTTTGCACTGGATTATATCAAATTTGATg
atgaaaagaagtacttctacTTGAAATATATAGTCAAGGTTTGATTAAAA
TGGTTATTTTTGTTCTGATTCAACATAAGAGATTATTTGTTTTGTTAGAT
CTTTCAAGAAACGTATGTTTTAAAATCTGGTGCACAATATACTGTAATTT
CATCAATACATTTTAGACTGGTTTGCCTGTTGCTCGTGGTTCAGCTGCAA
TGTTGAATTTCAATTGCATGTTAATTCTATTTCCTGTCTGTAGGAATCTT
CTATCTTTGATCAGAGATTTCCCAGTAAGTAACACATGTTTCTACTTACA
GTTTTTTCAATTGCTTTCAGtgtttataaagtttttagaaatTATATTCA
TTTGCCATAAAAAAGTCATGAAAGCTGAAATGTAAGTGTAAGAATTTCCT
TTCCTTTTTAGaaatagaataaaaaacaattacTTTTCTTTGATATTTAG
TTTTTGCCACATGCAGTTGGGCGTATCATGGACAAAAATATCACGTTTCA
TCGAATGATTGCTTACATGATTTGTTTTGCAACAGGTAGGTCTTCCTTCG
AGATATTTTTCTCGTTTAACTTGCATAATGAAGATCAGTTGTTAGTTGTT
AGCTNGGGCGTATCATGGACAAAAATATCACGTTTCATCGAATGATTGCT
TACATGATTTGTTTTGCAACAGGTAGGTCTTCCTTCAAGATATTTTTCTA
GTTTAACTTGCATAATGAAGATCAGTTGTTAGTTGTTAGCTGGTGTTtgt
ctcaaaatttcattcataCTCAATATAATTATTTGATATCAAGGAAGGAG
TCTTCCTTATTAAGGGAAAGGGTAGACAAATCTCATCTATCCAATCTTTT
ACATCTTACCTCACCATATTCACCTTTTTCTTGTTATATTAGCCTTACAT
TTGGGTGCACATATCTTCAACTTTGAATATCTCATTGCAAGTAGAGATGC
AACTACTGGCTTAACTAAATACttgaatgatttcaaagatggCGAAGATA
AAGACCGATTAAATCCCATAGAATCTGCTGGATTGGTAGGTCAAAActct
tattttcttatttttttgaccGAGTTGGTTTTAGTTCTTTGTTATATGAA
TCTGCCTTCCTGTGCTCAAaccagaagaagaaaaattttaaagaattatt
ATTGTTCTCTTATGATAATCACATTAAATTTATTGATGTACAAGTAAAAC
AAAGTTTTCAACTTTCTCAACataaattttgttgtttacATGATGTATAC
ATGTgtattatttcttattttagGATCCTGTTTTGGAGTTACTTCAAACT
GTGGCTGGAATCACAGGAGTCATTATTACTATTTCTCTTATTACTATGGT
AAGAGAACATCATATTGATGAAGAATTGATGAAAGTAGAGGGCTATGTGT
AATTTTTTCTTGCACCTTGTAGCAGATGTGATGGGACCATAAAACACATA
ACTTGGTTAAAGTTTACCGGTTAGGATTGATGTCAAAATTCTCTCAAGTC
TGTGATAAAATTAATACAACGACTTCAGACATTTGACAGCAATCCTACAT
GGTAATCTCTCTAACCCAGTTTTCTCAGGTTTTTATCATACTACTTCAAC
CCTGAGATCTCTGGCATCTTGCAAAGGGTAAAAAGCAAAGTTGTTTCGAA
TCTGATATAGAATAGTCTAGTACATAAACAAATTCTATATTACAAATTAT
TCGGACTTCAAAACtcacaaaacaaattttaaagcaAGCTATAAAtcctt
tcaatttcatttttaggtATCTTCTTCAACCGAGTTGATNCCGAGTTGGT
TTTAGTTCTTTGTTATATGAATCTGCCTTCCTGTGCTCAAaccagaagaa
gaaaaattttaaagaattattATTGTTCTCTTATGATAATCACATTAAAT
TTATTGATGTACAAGTAAAACAAAGTTTTCAACTTTCTCAACataaattt
tgttgtttacATGATGTATACATGTgtattatttcttattttagGATCCT
GTTTTGGAGTTACTTCAAACTGTGGCTGGAATCACAGGAGTCATTATTAC
TATTTCTCTTATTACTATGGTAAGAGAACATCATATTGATGAAGAATTGA
TGAAAGTAGAGGGCTATGTGTAATTTTTTCTTGCACCTTGTAGCAGATGT
GATGGGACCATAAAACACATAACTTGGTTAAAGTTTACCGGTTAGGATTG
ATGTCAAAATTCTCTCAAGTCTGTGATAAAATTAATACAACGACTTCAGA
CATTTGACAGCAATCCTACATGGTAATCTCTCTAACCCAGTTTTCTCAGG
TTTTTATCATACTACTTCAACCCTGAGATCTCTGGCATCTTGCAAAGGGT
AAAAAGCAAAGTTGTTTCGAATCTGATATAGAATAGTCTAGTACATAAAC
AAATTCTATATTACAAATTATTCGGACTTCAAAACtcacaaaacaaattt
taaagcaAGCTATAAAtcctttcaatttcatttttaggtATCTTCTTCAA
CCGAGTTGATCAGGTATATATTAGGAATTTCCATTTTCGAGTGACTTAAA
AGTTTCTTTGAGAATTTATTGTGCAGTTTCTTGAGTAAAAAATTCCACCT
CATCGCCTCCCTCCAGGATGTCTGACAGCATGTGAAAACTAACCATTTAT
GATGGATAATTCTCTTATGATATTTAtctgacatttttttattttttaga
cgttcatattttgaagtattttggtTCACCCATCATTTGTTTGTTGTCTT
TTTCATCGGAATGCTTTTCCATGGCTTCGGGTGAGTTGATATTCTCAGAA
GGAGTGATTTCAGACTAGTCATTCATATATAAAACACTGCATAAAGCTTC
TCCTTCCCTGGCCGAGGCAAAACGTGCAGTGAGTGAGTCATTGCAGTGTC
AAAATGCTTCAACTAACCCCACTACCTTTTTaaagaaacatttttatgaG
AACACCAGGTCAAACTTGATTAAACCTACGAATAATCAGAATCTCATTAC
GACACAACAAAAAATTGATATCATTATGAACAAATTGCACCCTTTTAGTG
AACTTCTACGATCCCAAAACAACACGTCTGAACACAATCCTGAATATTGT
TCCCAAGATGACCGATACAATACTGACTCAGAATGTCAGAAACCTCCACG
ATTCAGTGCTGCAGGACCACAGGTGAGagattttgaatcttttttttgac
actttttcaatacctttttgttttcttggctGGGATGATCTTATCTTGAT
CTTAGCATGGGTCGCTATAGTCCTACCAATACAGGACCAAAATTATGACA
TTTCTGGGTTAAAATAGTAGGCGTATTCAGAAATTCTCTATCCTGTGATA
TTCTAAGTATGAGGGGTCATTAATTCCACTTAACCGACCTGAAGGTAGGT
ATCTCTATCCAAGATGGCAACTTATCATCCAGTAGAATATGTAACAGATT
TCAGGGAATAGAATACTagatatgaaatatttttcaatcgttaTAGTCTT
GGAAATGGATTATTGCTCCGATGGGGTTGTACTTGATTGAACGTTGCATT
CGATTCTACAGATCTTTCCAAACTTGCGAGGTTAAAAAGGTAAATACTCT
TTATTGGTGAAATTGAGTTTATCAAACCTTATACATATTTTCTTTTATTG
CTACTGTATATTGCCTTTATTTACCATGCAACTCATTGCAATAAATCCAC
CAAGTGAATGTTAAAAAGAAATTGTCATGTTGTACATTTGTTAAATTATA
TCATTCTTTAGGTTGTTAAGCATCCATCGAAAGTCATTGAAGTTCAAATG
AGGAAGCCTGGATTCAGAGCACAAGCTGGCCAGGTAGGTCGCTATTCAGA
ATATGCACCACTGCAGTGTCTTAAGAGATTTTTACAATGTTTTTACCCAA
TACGTCATTTTAAACCAATCATATTTCGTAAAAGTGACGTGTTgcgtgga
aaattttgaaatttttaggaagacattgcagtggtgcatatcctGAACTG
TTGCACATGGTCTGTGTTTGCTGCAGTCACTGTTGAAAAGTCTGCATGGA
AAAGTGTCTTATTTGTTATTATGCTCGTCCTCCAACGAAAAAGTTTCTTC
TAGAAATTTAGGTTTATATAGGAAGTatgaccatgttcgcacgtgacggt
tctGTTTCGCTTCAAAACGATatttctattggttacatttcagtgttacg
tcacttctaaccaatagaatggcttcatttcgtttcggagcgaaacagaA
CCGTCATGTGCGAACATGAtctatatctatagaggtcttcGAACCAGACT
ACTTTGCGATGCACTCGCAAGGAAAAGGAGTGCAtctgtttgtttgaaaa
tgtcaaaataggACAAACTTTGGTAATGAACTTGAAATCGTTGTAGATAT
CGGGACTTTTACAGGGACACACATTATCATCTTTCAAGGCTGATTTAGTA
TAAGGaatttatataaaatatttgaGTGATTTTGATATGAAGGAACATGA
CATAAACGCTTGTTGCAATAAATGCAAAATTCTAATTGAGTTTTTCTCTG
CATAAATAGAATGAATGTCACCTCACTTTATAACTGTTTATTTTCTATAG
TAAGTGAGTCACACTTTGACAGTGAGGCATTCTTGCATCCTACTGCGAAG
TCTAGTATAATTTTAATAGATGCTTATCACACTGTGGTTAGAAATCGTTC
ACATTTTTCTAATCTTCTGCCACAGGCACAGAGTGTAAGCACAATTAATC
TTTAAAGACTATATATGTTACATACGGTGCATACTGTtatgacacattct
ctttataaGCAGCCCCCAAATTTTGGGCTAAGGctgaagttatttttcat
tccTTAAATTCCATTCCTTCTCCTGATATTACACTTGGatcaagggctat
cgtttgccttcacgaaaaagtaaaaaaaaaattggctgatTTAAGGGGTC
GAGATGGGATCCTTGTGTAatcatgatttttgtttttcttatattgCAGT
ACATCTTTTTACATTGTCCAAGTATCTCACCTTTGGAATGGCATCCGTTT
ACTCTGACATCGGTGAGtattaaatatttaaaagatAACATTTTAATCTA
AACTCTTCGAATAATAACGTCATGGCCTAGCAGGAGgttaattgtatttt
tgtaNCCTAAACTCTTCGAATAGTAACGTCATGGCCTAGCAGGAGgttaa
ttgtatttttgtaagTTACGTAAATTTGCTTATATACTTTACActatttc
atcaaaaattacaaaacttcATACATTATAACTAATATGGGGAACTGAAt
ttgttttccatttttatGTTTCACCATGTTTTCACCATTTAGATCCAACT
GGAACCTTTAAAAAGGCCTGGGAGAATATTCTGTTTCTAGAATGTCGttt
tcttaaatattttttttcaaattcaagccaAACGTCTGTTTAAGATGATT
TTCTCAGGGGATTCCTCAAATTGTCCTTGAGAGAATTGCAATTGTTTGAA
AATCGTATTATCGTTAAAGGGGAATTGTTTTGGTTATAATTCTTTAGAGG
TTATTGTTTgggaaaattaacaaaaacaaataaaaagtgTTATAATATCG
TTCCTGTTCGTTATAGTGTCCAGAAGAAGATTTCTTTTCGGTCCATATTC
GTATTGTTGGGGACTGGACTCGTAAGTCATTATCGCCTGCTATGTTCTAT
TTTTATCATCCATGGCTTGAAAAATAAAGTTTGCGTCAAAATGACAATGA
CTTAGCTCATTATTTAGTTTGATTTTCTCACGAGAAGTTGTAAGTCTAAT
GGTTAATGTTACAAAAGGATGTTTTAGACCAACTTCTATTTATCCTTTTT
AAAACTGTTTCCTAATACCCAACATATAAACATTTATCATTCGATTTCCA
AACAGAGGCTTTGTCGAATTCTTGTGGTAATGACACTGATAACGTTGATG
TCTCCAAAATTCCAAGGTAAACGAAACAACTTCTCCTTGATGGTAACTCT
GCTCCCTTACTGTAATCACTACCTATATACTTTATTTATTCGAAATTAGA
AATGTCGTCTATCTGTTAGTTGGATTATAATTAGATGTTAGATCTGGAAA
AGATAAATGATTATGCTTTGTAGTTTTTGacgcttttttttcttttttac
tttttttcagatTGGCATGTGATGGACCATTCGGAACTGCTAGTACTGTA
AGTGTTACATTAATTGTGTAGTAGTGTAATGGGTATCGATCTTGACTGCC
GTCCAGGAGGGTGGATTTCGATCGACACTTGGTGCTGTAATTCACCTGGA
AAAGAATGTACCTTTTCccaggtcaacccataccatgagAGGGAAATCGG
GTAGACAAAAACTCAAGAAGCCTATCGGTGACTGTGCTAGACATCGATTC
CGTAATACATTCTGGATGGCCACTCTTCTTGCTCCCTGGTGGTTCACGCC
CAAACTGTGGGCCAATATCGCTAAAGCCATAGAGCCTAGAATGCTCTGTT
CACAACTGGGCATCTATAATTACAAAAAAGGTCCACGAACTAAGAGCAAC
AGAAGGCCCAAAATCAACAAATCATAGATATGAATACTCAAAgctataaa
tatataaatatgtTTAGAAAATTGATTTCACCGATTTTTCTTTGTAGGAC
GTCTTCCGCCATGAAAATGTCATTTGTTGCGGAGCTGGTATTGGAGTCAC
GCCCTTCGCCTCCATTCTCAAATCCATCTGGTAAGATATTCAAAATTCTA
AACTTGTTTCTAGTACAAATTGATTCGATGTTAAGAAGCAAAGTGATTGA
TTATGAGGCCTCATTCCAAACTTCCTTCTTTAGTGTTTCGTTCCTTTAGA
TAGTGGGTCAAGCTGCCCATAAAACCTCGCAATATAGTTGATCATCTAAA
AtccctttattatttttttcactgaGTTGATATTGGAAAATAACAACTCT
ACAAGCTTGTTTAAGACTCTCTCTTCTGTTAAAGTTCTTGCTCTTCTTTA
AAGGTACCGTCAACAGAGAAAGGATACAACCCTGAGAATCAAGAAAGTTT
ATTTCTATTGGATTTGTCCAGACNTACCGTCAACAGAGAAAGGATACCAC
CCTGAGAATCAAGAAAGTTTATTTCTATTGGATTTGTCCAGACACTAATG
CTTTTGAATGGTTCTCTGATCTCCTCCAATCTCTTGAGCAACAGGTTTGT
ATTCTAAACATATTTTCCATTCACGATAGCTATTAATAAAACGGCTCTGT
TCTTTAATAAAAAGTTGAGGATAAAAAGAACTGAGTAGTTGTGATACTCA
AACAAGACTTATTTCGGTTTCCTTCGCCTAGTATAATTAGATGAACTCTC
CATTCCGACTCAACCTACAAGCCACCGCGCCGATTTAAAAAAACCTTGAA
GAGAATTGTGTAGTCATTTCTGATTTTTGTCGAAAGCAACATTTACTTCA
TTTATGGTTTGGAATTTTCGGAATAAGgaataattcaattttattttttg
tttattagaTGATGGAGAAAGGCGAGATGGGATTTTTGGAATATAATATT
TATTTGACCAGAGGTTGGGGAAAGGGTGATGTGAGTATTTTTTTGATCCT
TTTGAAGAGCGTCCGTATCAATCTGTCTTGCGTCATTGTATCTCGATCTC
TTCCACAACTCGAACGATTATTTGAAACAGAAACTGTGCAATATATATAT
TTCATCTTTCTTTGCAGGCACGCAACATTATTCTGCATGAAAATGATGAA
GAGGACGTCATCACAGGtctcaaacaaaaaacaaatttcgGACGTCCGAA
CTGGGATGAGATTTTCAGAACTACTGCTATTAAACATAAAGGGTAAGATA
TTGCATCAAGATCAGGCCCTTAGAACATTCTTTAGACTTTTGCTAAACAT
ATTTCTGACANTATCAAGATCAGGCCCTTAGAATAGTCTTTAGACTTTTG
CTAAACATATTTCTGACACCTGAGTTTACTGCAGCATGGTGTAGTAGGAA
TTGTGTTTTGGGCCTTTCCAGAAAAGATTGTCTTGGGTTTTTGAGGACCT
CAATTTAtggaaaatatttagatttGTGATTTGACAGGTATATAGGAGTT
TTTATTCTTTCTTCTTACGCTTGCTTCATTCTCGAGAATGGtttcaattt
taaaatgttCAATATTCCGTCATATTGATCGATGAACTTTTTGACCTCCT
CGACCAGGATCATTCATGAGCTTTGGCGAATGATTCTCTCGACCTCCACA
AAAACGACCTTATCTTCGACTAATCCCTCTGAATATTCAGACTTTTTATC
ATGTGTTTACTCCCTGGATGTCTGCAATATCATCAAGACCCCCAtacttt
ttttggggggggagCCTAATTGTTCTTCCAAATATGAAATAGGCTTAATA
TTTGGATAATCTTTTCGATAAtacaagaaaaattaaactGGGTTTGATTA
ATCTttggaaaaagtgtttaaaattAAGACTGAACTTTTGTTCATCTCTG
GTTTCTAGATCTGATGTTGGTGTGTTCTTTTGTGGGCCAGCCATCCTTTC
GCACACTTTACACGAGATGTCCAATAAGCATAGCAACGAAACGACCAAAT
TCTATTAtaacaaggaaaatttctaagtGGGTTTAAATTGGATTGGATCA
TATATTATTGGTTTATAATCAAGGATGGTTTTGTTGATATagaaactttt
tccaaaatattttttggtctTCGCGAGACTGAATCTCATACACTTGGAGA
tgaaatattatcaaataatagCAAAAGCTTTTGAAATGGTTGTAAtcgtt
ttaatttttgattatcACATTGaaggaattttttgaatttcaatttcttc
aattcaaaatttggtaaaaaacaAGGATTATGATTTTATCTTCAAAATGT
TGAATTGTGAATCACCTAATTTTGAAAACCTTTTGCAAAGTAAAGAACAG
TGCCAATAGAATAAAAGCCAACAGTAGAATAGATGTTTTACAGAAATTGT
CCACTGCTTTTTACGTAAACACCATACTGTCCAAGACCAGGGCCTAAAAA
CTTTGGTGACAGAGatttaccaaaaaatattttttgtataattataagaa
atattaaatatttattttttagcttATTATTTTTGTTCCTCACAATaaag
caaaaacattttctgtttatATCAGCAGTTCAACATTCGAAACTGAATTT
CAAGAGTATGGGTGGGGCTTAGATAACGCCCCTAGATATATGAGACGCTT
TTTTTCTATTCGCTTTCAGTTTGAAAGTCGATTCAACTTGATCTTCACAg
caaaatttcacaaattttagCACATGTTTGATGAATTTTTCATCGTTTTT
TTCTAGATTATGTAGCTTTTAATATgatgtaaatataaaaataatgtatt
ttttttaccaaggataattattctttttgtatttttctggATAATGATTT
ATAtggtaattttttgttttgttttttttcggtcCATGTGTTTTTGCATT
GAATATTTTATACAAA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_012450	XLOC_012450	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000408	supercontig	sc0000408:121788..131903 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.33461	3.43417	13.0496	11.2241	1.13655	0.368951	0	0.417831	0	0.448972	1.14976	0.612219	0.654901	0.876606	0.394139	0.435972	0.215108	1.19734	1.26424	0.463809	9.79292	9.32743	2.84514	7.42224	0.173394	0.618938	10.0271	9.22322	5.67309	6.13985

Blast

[Close]

BLAST of TCONS_00022195 vs. Swiss-Prot (Human)
Match: CY24B (Cytochrome b-245 heavy chain OS=Homo sapiens GN=CYBB PE=1 SV=2)

HSP 1 Score: 543.888 bits (1400), Expect = 0.000e+0
Identity = 293/572 (51.22%), Postives = 385/572 (67.31%), Query Frame = 3

Query:  252 MGFW-VNEFPKYFVLFIWLGINVMLFALDYIKFDDEKKYFYLKYIVKTGLPVARGSAAMLNFNCMLILFPVCRNLLSLIR-DFPFLPHAVGRIMDKNITFHRMIAYMICFATALHLGAHIFNFEYLIASR-DATTGLTKYLNDFKDGEDKDRLNPIESAGLDPVLEL---LQXXXXXXXXXXXXSLITMVSSSTELIRRSYFEVFWFTHHLFVVFFIGMLFHGFGELLRSQNNTS--EHNPEYCSQD-DRYNTDSECQKPPRFSAAGPQSWKWIIAPMGLYLIERCIRFYRSFQTCEVKKVVKHPSKVIEVQMRKPGFRAQAGQYIFLHCPSISPLEWHPFTLTSCPEEDFFSVHIRIVGDWTQALSNSCGNDTDNV-DVSKIPRLACDGPFGTASTDVFRHENVICCGAGIGVTPFASILKSIWYRQQRKDTTLRIKKVYFYWICPDTNAFEWFSDLLQSLEQQMMEKGEMGFLEYNIYLTRGWGKGDARNIILHENDEEDVITGLKQKTNFGRPNWDEIFRTTAIKHKGSDVGVFFCGPAILSHTLHEMSNKHSNETTK---FYYNKENF 1928
            MG W VNE    FV+ +WLG+NV LF   Y  +D   K+FY + ++ + L +AR  AA LNFNCMLIL PVCRNLLS +R         V R +D+N+TFH+M+A+MI   +A+H  AH+FN E+ + +R + +   +  L++  D +++  LN       +P   L   +  +AGITGV+IT+ LI +++SST+ IRRSYFEVFW+THHLFV+FFIG+  HG   ++R Q   S   HN   C Q    +    EC   P+F+   P +WKWI+ PM LYL ER +RF+RS Q   + KVV HP K IE+QM+K GF+ + GQYIF+ CP +S LEWHPFTLTS PEEDFFS+HIRIVGDWT+ L N+CG D     D  K+P++A DGPFGTAS DVF +E V+  GAGIGVTPFASILKS+WY+     T L++KK+YFYW+C DT+AFEWF+DLLQ LE QM E+   GFL YNIYLT GW +  A +  +H ++E+DVITGLKQKT +GRPNWD  F+T A +H  + +GVF CGP  L+ TL + S  +S    +   F +NKENF
Sbjct:    1 MGNWAVNEGLSIFVILVWLGLNVFLFVWYYRVYDIPPKFFYTRKLLGSALALARAPAACLNFNCMLILLPVCRNLLSFLRGSSACCSTRVRRQLDRNLTFHKMVAWMIALHSAIHTIAHLFNVEWCVNARVNNSDPYSVALSELGDRQNESYLNFARKRIKNPEGGLYLAVTLLAGITGVVITLCLILIITSSTKTIRRSYFEVFWYTHHLFVIFFIGLAIHGAERIVRGQTAESLAVHNITVCEQKISEWGKIKEC-PIPQFAGNPPMTWKWIVGPMFLYLCERLVRFWRSQQKVVITKVVTHPFKTIELQMKKKGFKMEVGQYIFVKCPKVSKLEWHPFTLTSAPEEDFFSIHIRIVGDWTEGLFNACGCDKQEFQDAWKLPKIAVDGPFGTASEDVFSYEVVMLVGAGIGVTPFASILKSVWYKYCNNATNLKLKKIYFYWLCRDTHAFEWFADLLQLLESQMQERNNAGFLSYNIYLT-GWDESQANHFAVHHDEEKDVITGLKQKTLYGRPNWDNEFKTIASQHPNTRIGVFLCGPEALAETLSKQSISNSESGPRGVHFIFNKENF 570

The following BLAST results are available for this feature:

BLAST of TCONS_00022195 vs. Swiss-Prot (Human)

BLAST of TCONS_00022195 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
CY24B	0.000e+0	51.22	Cytochrome b-245 heavy chain OS=Homo sapiens GN=CY...	[more]

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TCONS_00022195 (transcript) - C. hemisphaerica