XLOC_010996 (gene) - C. hemisphaerica

Overview
NameXLOC_010996
Unique NameXLOC_010996
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000331:74203..80047+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_010996 ID=XLOC_010996|Name=XLOC_010996|organism=Clytia hemisphaerica|type=gene|length=5845bp|location=Sequence derived from alignment at sc0000331:74203..80047+ (Clytia hemisphaerica)
CATTCACAATAACTTTAGGAAAAACTATTAAAACTAGAAGATAAAATCAT
ATTTTCATACTTTTCTCTTATATTTATATTTCTTTAggtgaaaaataaaa
agtatgaACAATGTTTGACGCTTATCAAAGTGGTGAGGATGGCCACCGGA
GAATCAAGTACTGAAGACGaattgtcacgtgatttctcaACATTGAGTAC
ATCCTCCTCTGTTACAAGTTCCATAAGTAGAAAAAGTAATGCAAGTACGT
TAAAAGATGACCAAGATGGTGAAGATTTATCTCGTCAAGGAACAACAATG
TCGGATGAATCAACGTCATCCCGACCGACCTCTGGACTATCGNTATCTCG
TCAAGGAACGACAATGTCGGATGAATCAACGTCATCCCGACCGACCTCTG
GACTATCGTCGGTAGCTACTGCTTCCCGACAAAATACGGTTGGTTCGTTA
AGAAGTGAGAATAATTCACGACAATCTCAACGATCGCTTTCTAGAGGAAG
CACTATTCGAAATGATGATCCCGAAGTGAAGAATAATTCGGTTTCACGAG
AATCTTCTGTCTTGTCTTCTCGGAATGGATATGATGACGATTTTCATGAC
GACGAAGAATCCAGTCCAACTTCGGCATCAAGCCGACAACAGTCGTTTGT
CGGGAAATCACCAAGTAATGATAATAGTGATGATACTGAGAGCGAAAGTG
AAGATATGGGGAAAATGGAGAAAGAAAACagtgttttgattgaaaaagat
GGGAAATTTGAGTTAGTCGAAGAACGAAACTTAACTATCGATCAACGAGA
AGCTCTCGGTTTAACGAAACGAGAAAAACGAAAACCGAACACGTTGAACA
TTCCCGCGTCTAGTGGTCGTGTCCGTAAATCAAGTAACCCGGAGTACGCA
CATTTGAAATCGGAGTACGGTATGAGTGAACAACAGAAGGAGATGAAATT
TCGACGTGTTTCCGTCATGCAGATGAGACGACAGGAGGAGAAGGAACGAA
TGAAACAAGAAGACGAAGAGAAGAAGAGAGCAGCTGATAAGTCGTTCCAG
GTACACTATCGTATTGTGTGATGTTTTGGTCAAGGTTTTATATAAACTGG
CTTTTGCGGGTTAACTATAATGACTGAAAAAATTCTCGTCTGgctaaaaa
aatttctcaattgTTGGAAAATAATTAAGTTGAGGTTAGCATAGTTCGCA
CGTTCGAAAGTGAACTTTTGGTTTGATTACTATTTTTCTCATTGCTCACA
GGTTGTCGATCATATACAGCCCGTTCTTTTTGTTGGTTTATTCGTAAGAC
AGAGAGTAGTTTTTGGTGTTTGGTCTGCTCGAGCTAGCAATAAACTAATT
TTAAATTCTCCTTTTATTCTTCCAGCAATGGCTAGCACAAAAGAAAGAGA
CCAAAGCAGACAAGAAGCCTGCTACTCCACATCAAcgtaagaaaaagaag
acagtACCTAGTGTACAATTGAGCGAAGAAGAAATGCAGCGGCGGGAGCT
TCAAGACCGCGCGTTCAAACAATGGATAGATGAGAAGGAAGAGCAAACGA
AAGATGAGAAAAAGATGGAGGAAATCAGACTAGCTGAAGAAGCACAAAAT
TATGTTGTCAGAGATCGAAAACAATGTGACAAAGCTTTTAAAGAGTGAgg
attttgtttatgttgatcTCAGCCTTTTATTTTNGGCTGATAAATCGTTC
AAGGTACACTATCGTATTGTGTGATGTTTTGGTCAAGGTTTTATATAAAC
TGGCTTTTGCGGGTTAACTATAATGACTGAAAAAATTCTCGTCTAgctaa
aaaaatttctcaattgTTGGAAAATAATTAAGTTGAGGTTAGCATAGTTC
GCACGTTCGAAAGTGAACTTTTGGTTTCTTTGATTACTATTTTTCTCATT
GCTCACATGGGTCACAGGTTGTCGATCATATACAGCCCGTTCTTTTTGTT
GGTTTATTCGTTAGACAAAAAGTAGTTTTTGGTGTTTGGTCTGCTCGAGC
TAGCAATAAACTAATTTTAAATTCTCCTTTTATTTTTCCAGCAATGGCTA
GCACAAAAGAAAGAGACCAAAGCAGACAAGAAGCCTGCTACTCCACATCA
AcgtaagaaaaagaagacagtACCTAGTGTACAATTGAGCGAAGAAGAAA
TGCAGCGGCGGGAGCTTCAAGACCGCGCGTTCAAACAATGGATAGATGAG
AAGGAAGAGCAAACGAAAGATGAGAAAAAGATGGAGGAAATCAGACTAGC
TGAAGAAGCACAAAATTATGTTGTCAGAGATCGAAAACAATGTGACAAAG
CTTTTAAAGAGTGAggattttgtttatgttgatcTCAgccttttattttt
tgaaatctttcctGCAAATCTTTCTGGCTTAATCATATTTAAGATACCAG
CTTGTCCAACAGTAAAGAAAATAATAAGCGACTTTTATGATTTTCCGCCT
ATCATTATGTTGGAGACAGAAATTGACCTTGAAGCACTGCAGAGGTTCAC
GAGGGAATTTCCTTTCTCTATCAAGCAAGAAAAGTAAAACCTTATGTTGA
cagaataaataatttttttttgattaaatAGTAATTTACCTTTACTTGTC
TTAGATggttgaaaaagaagaaagtggAAAGACAATCAACGCCCACTCAA
ACCACCCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
GCTGATAAATCGTTCAAGGTACACTATCGTATTGTGTGATGTTTTGGTCA
AGGTTTTATATAAACTGGCTTTTGCGGGTTAACTATAATGACTGAAAAAA
TTCTCGTCTAgctaaaaaaatttctcaattgTTGGAAAATAATTAAGTTG
AGGTTAGCATAGTTCGCACGTTCGAAAGTGAACTTTTGGTTTCTTTGATT
ACTATTTTTCTCATTGCTCACATGGGTCACAGGTTGTCGATCATATACAG
CCCGTTCTTTTTGTTGGTTTATTCGTTAGACAAAAAGTAGTTTTTGGTGT
TTGGTCTGCTCGAGCTAGCAATAAACTAATTTTAAATTCTCCTTTTATTT
TTCCAGCAATGGCTAGCACAAAAGAAAGAGACCAAAGCAGACAAGAAGCC
TGCTACTCCACATCAAcgtaagaaaaagaagacagtACCTAGTGTACAAT
TGAGCGAAGAAGAAATGCAGCGGCGGGAGCTTCAAGACCGCGCGTTCAAA
CAATGGATAGATGAGAAGGAAGAGCAAACGAAAGATGAGAAAAAGATGGA
GGAAATCAGACTAGCTGAAGAAGCACAAAATTATGTTGTCAGAGATCGAA
AACAATGTGACAAAGCTTTTAAAGAGTGAggattttgtttatgttgatcT
CAgccttttattttttgaaatctttcctGCAAATCTTTCTGGCTTAATCA
TATTTAAGATACCAGCTTGTCCAACAGTAAAGAAAATAATAAGCGACTTT
TATGATTTTCCGCCTATCATTATGTTGGAGACAGAAATTGACCTTGAAGC
ACTGCAGAGGTTCACGAGGGAATTTCCTTTCTCTATCAAGCAAGAAAAGT
AAAACCTTATGTTGAcagaataaataatttttttttgattaaatAGTAAT
TTACCTTTACTTGTCTTAGATggttgaaaaagaagaaagtggAAAGACAA
TCAACGCCCACTCAAACCACCCGGAAGAAGTCAACCTACACACCTGCAGG
TGTCACGCCAACTGCAACCAAGAAGAAGTCTTTAGCACCTATATACGCTC
CTTCTCTTGAGCAGAGGCGCCCTCGTTCTTCTGTACGTAGCATGGCGGCG
AATGGGATggattgcaaaaatgacgtcgAAGTAAAGAGGAGAcctaaaac
atccaaaataagGTATTTCTTAATTGCTGATAGTTTGTCTTTTATTAATG
CCTTTTATCATCCCGAACTCAATTTTAATCGTTCTAAAGTTCTTTTTTTG
TGAACGCTCTCCTCTTTAACTCTTACTTGGCATTATGTTAGGATAACAGA
CAATTTTGGATATCGACACCCTGCATCAATCGACGACTTCATCGAAAGGA
GGAAGTGATAAGCATCGTTGAGCGATAAATGGTATTAACTTGTTTTTCAA
TCAAAGATTACCGTAACTTTGCTTGACGAACCATTCTCTAGTTGTCACCA
CCTTTGCTCCAACGACACAGCAACTGATGTTAGGAACCAAGGTATAATGA
TGAACATTGTAACAGACTTGTAACATTCTGCCTCTCTGATATTGACTAAA
ATCGAGATTTTGCGATTTGGAATGTGGGTTTCAATCAACCATATAAACAT
GATAACTATTGAATCCCTCCATGATGGAATCAGAAAAAAGTCGACGAATC
CGGGGTAGGTCTCTATATTTTCAAGGGAGAGTATCTTTAAAGTTTACCGA
AATTCCAAGAATCTCTGAAATTTCGAAGAAAATAAAAGGGAGAATATCtt
aaaagtttgttaaaattCCAGGAAGCTGAAGTTCCTGAATAAATCAAGGC
ATGACAAGTTAAAAGTTTTATCGATTCAGCTTTTTCCATCAAAGTTTTAC
ATACAGACTTAATTACCTAACACTTAGGAATAAACTGTATACTGCTCTTT
TTAACATGTTATACAtttattttagttcgaatttaTTTTGCTACATTATT
TTAGGATAGggactttttttgattttgatttttttctcgataatCAAACC
ATTTCTTCTCATCCaaaattgtaaataaaaaattactaaaaacaAAGAAT
CTTTATTTATATCTTATATCAAAGATAATTAGATTTTCTCAAATGATTTT
AATTGTAAATTTTATTCTTTTACTAAAGATAATATTTTTAATCCATCATG
GTTATTTtcctgaaaatcaaaatttcatgacATTTTTTAAAACCAGTCTC
CTTGAAATCTTgagaatttttcacaaaaatgcacATTtggtctgtttttt
tttaattctaactGATCAGTTTATAATATCACCAACATTTCAGATTAGTC
AGGGATATAAATCCCAACTAAAAGCTCTTTGGAaacattttgaaggaaaa
aacaCTTGCGTCACTTGCGTCTTTACCAAAAGAATTGTCAAGCTGTTCTA
TTTCTGATTGCTCTTAACTTCTTAACGACTTTAATTAACCTGTGATTAAA
CTTTCAGACATTTGAGTAATTAAATAGCCTATTTTAAGGCTGACAAACAC
CTTAGAAACTCGTTTGTGATTGGTTAGTAATAGGTCATGAATCAATTTAG
TAAGGATTGGGATGAGGGGGACTCTAGGTAAAAGGATCTATCGGTAAGAC
AATTCAACCCCTTTAATTCAATTTGCTTGTTTTAAATAAATATTCGTTaa
gatatatttttatttagatatatttcattcattttagtttaattgcAATA
GGTGACTTAAATTCCAAATTGTGGACGAGTTAATCCAGAAGAAAAATGTC
TTCTATAATTGCTGGACTACAATATGTTGTTATTGTCGTTGGTATTGTAT
TCTCCAGACATGATGCCAGCTTCTTTACGGTTGGCTGCTCCCATTAAAAT
CGACTTTTGATAGGGTAATAATTCATAATGACATATATGTCTAACAATTC
TCTTTTTAGGATAAGATTTACTGATAAACTAGGATTTCAGTTGTCTTGAT
TCAAGACCGGTCGTTTGTGGATATAACAAGAATCTAAAATTTCGAAAGgt
ctaaatattttaaatttttatttagacCATTGTGCTTAAACAGCCAGTAC
TGATTGGACAAGCTGTTCATAATTACTCTGCGCTACACTTAATTG
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00019555TCONS_00019555Clytia hemisphaericatranscript
TCONS_00019556TCONS_00019556Clytia hemisphaericatranscript
TCONS_00019557TCONS_00019557Clytia hemisphaericatranscript
TCONS_00019558TCONS_00019558Clytia hemisphaericatranscript
TCONS_00019559TCONS_00019559Clytia hemisphaericatranscript
TCONS_00019560TCONS_00019560Clytia hemisphaericatranscript
TCONS_00019561TCONS_00019561Clytia hemisphaericatranscript
TCONS_00019562TCONS_00019562Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00019561-proteinTCONS_00019561-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000331supercontigsc0000331:74203..80047 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
10.05	8.28	3.75	3.87	202.02	148.64	137.91	146.5	107.33	119.37	75.92	89.98	45.92	38.22	23.83	25.98	27.34	30.34	58.56	70.26	34.65	35.94	25.21	27.55	47.12	44.33	102.45	93.7	53.1	49.37